Gene
RNA
| Item | Value |
|---|---|
| gene id | opn8a |
| gene name | NA |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053129.1 |
| NCBI id | CM020926.1 |
| chromosome length | 36987114 |
| location | 13388815 ~ 13412812 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| description |
|---|
| opsin-5-like |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039780978.1 | True | 1281 | mRNA | 0.47 | 4 | 13388815 | 13412812 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| clic5b | clic5,LOC104958973,LOC107378135,LOC106964163,LOC103355727 | coding | upstream | 139660 | 13229966 ~ 13249155 (+) |
| enpp5 | enpp5 | coding | upstream | 160337 | 13221106 ~ 13228478 (+) |
| irak1bp1 | NA | coding | upstream | 247294 | 13139981 ~ 13141521 (+) |
| tbx18 | tbx18 | coding | upstream | 322228 | 13056433 ~ 13066587 (+) |
| selenoi | selenoi | coding | upstream | 466259 | 12908967 ~ 12922556 (+) |
| opn8b | NA | coding | downstream | 8496 | 13421308 ~ 13431771 (+) |
| atad2b | atad2b | coding | downstream | 89832 | 13502644 ~ 13577416 (+) |
| gzf1 | gzf1 | coding | downstream | 458075 | 13870887 ~ 13875635 (+) |
| chgb | chgb | coding | downstream | 521021 | 13933833 ~ 13938559 (+) |
| LOC120547093 | tpd52l1 | coding | downstream | 576669 | 13989481 ~ 13990079 (+) |
| G184000 | phip | non-coding | upstream | 216571 | 13170922 ~ 13172244 (+) |
| G183933 | NA | non-coding | upstream | 641148 | 12746084 ~ 12747667 (+) |
| G183896 | ccnk | non-coding | upstream | 685573 | 12701168 ~ 12703242 (+) |
| G183891 | NA | non-coding | upstream | 748737 | 12639318 ~ 12640078 (+) |
| G183890 | NA | non-coding | upstream | 751279 | 12629289 ~ 12637536 (+) |
| G184071 | NA | non-coding | downstream | 2428 | 13415240 ~ 13415570 (+) |
| G184074 | NA | non-coding | downstream | 21173 | 13433985 ~ 13434206 (+) |
| G184075 | NA | non-coding | downstream | 21400 | 13434212 ~ 13434504 (+) |
| G184078 | mut | non-coding | downstream | 30231 | 13443043 ~ 13449099 (+) |
| G184085 | fkbp1b,LOC102794993 | non-coding | downstream | 45790 | 13458602 ~ 13468087 (+) |
| G183994 | phip | other | upstream | 141399 | 13145475 ~ 13247416 (+) |
| LOC120546167 | NA | other | upstream | 380404 | 12946999 ~ 13008411 (+) |
| bcl11bb | LOC103368061 | other | upstream | 649431 | 12707218 ~ 12739384 (+) |
| ches1 | foxn3 | other | upstream | 1519623 | 11764143 ~ 11869192 (+) |
| G183540 | sf3b6,pm14,SF3B6 | other | upstream | 2722343 | 10622736 ~ 10666472 (+) |
| LOC120546706 | wdcp | other | downstream | 55423 | 13468235 ~ 13474159 (+) |
| LOC120546742 | plcb1 | other | downstream | 611672 | 14024484 ~ 14140769 (+) |
| G184231 | NA | other | downstream | 949529 | 14362341 ~ 14381187 (+) |
| LOC120546619 | LOC103359912,LOC102080314 | other | downstream | 980628 | 14393440 ~ 14424864 (+) |
| G184258 | NA | other | downstream | 1112324 | 14525136 ~ 14529370 (+) |
