ptrhd1 (ptrhd1,LOC102782396,LOC103399259)


Basic Information

Item Value
gene id ptrhd1
gene name ptrhd1,LOC102782396,LOC103399259
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 28381682 ~ 28383084 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780980.1
TGTGTTCCTGTAAGGGTACAGGCAGAAAAATAAAGATGGCGGCTACGGGAGCCGGGTCTCCTAGCCGGTTGGTCCAGTATGTTGTTGTCCGGTCGGACCTGGTTCACAAGCTGTCCTGGCCTCTGGGAGCCGTTATAACCCAGGCCTGTCACGCCGCTACCGCCGCCATTCACCTTCACTACGGGGACCCGGACACACAGCAGTACCTCGCAGAGCTGGACTCCATGCATAAAGTGGTGCTAGGGGCTCCAGACGAGGCCGCCCTCTCCGGTCTATCGGAGACCCTAACACAGGCTGGTGTGGCCCACAAGCTTTGGATCGAACAACCAGAGAATATCCCCACCTGCTTGGCTCTGAAGCCGTGTCCAAAAGAGACTGTCCAGCCGCTGATGCGCAAGTTCAAACTCTTCAAATGACTACCTTGAAAGACACTGTCCACCTATGCACTACAGTGCATGTCCATATCTAATTTCATCCATAAAAGGAGAACATCTGAAAGTTGTACTCTTCACCTCAGTGCATCCAAACACCTGTAATAATGTCCGAGATTAAAGTTGGAAATATGAA

Function

symbol description
ptrhd1 Predicted to enable aminoacyl-tRNA hydrolase activity. Orthologous to human PTRHD1 (peptidyl-tRNA hydrolase domain containing 1).

NR:

description
PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1-like

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780980.1 True 567 mRNA 0.52 2 28381682 28383084

Neighbor

gene id symbol gene type direction distance location
fam184ab fam184a,LOC101465847,LOC102781517 coding upstream 1834 28203630 ~ 28379848 (+)
man1a1 man1a1,LOC102782693 coding upstream 219062 28001397 ~ 28162620 (+)
tbc1d32 tbc1d32 coding upstream 631029 27673178 ~ 27750653 (+)
selenol NA coding upstream 754695 27620131 ~ 27626987 (+)
ttc13 ttc13 coding upstream 764541 27592510 ~ 27617141 (+)
ncoa1 ncoa1 coding downstream 10023 28393107 ~ 28466873 (+)
rfx6 rfx6,LOC102778618,LOC102305591,LOC102193265 coding downstream 286178 28669262 ~ 28689591 (+)
vgll2a vgll2,LOC102778318 coding downstream 358084 28741168 ~ 28748192 (+)
plg plg coding downstream 390241 28773325 ~ 28786818 (+)
LOC120547119 NA coding downstream 483129 28866213 ~ 28872603 (+)
G187906 NA non-coding upstream 4042 28365238 ~ 28377640 (+)
G187886 NA non-coding upstream 184996 28177401 ~ 28196686 (+)
G187878 NA non-coding upstream 215355 28163132 ~ 28166327 (+)
G187884 NA non-coding upstream 252760 28128566 ~ 28128922 (+)
G187872 NA non-coding upstream 400659 27884718 ~ 27981023 (+)
G187915 NA non-coding downstream 36908 28419992 ~ 28420262 (+)
G187918 NA non-coding downstream 89031 28472115 ~ 28545515 (+)
LOC120546306 NA non-coding downstream 117645 28500729 ~ 28504391 (+)
trnal-cag_2 NA non-coding downstream 269518 28652602 ~ 28652684 (+)
G188057 NA non-coding downstream 495664 28878748 ~ 28880435 (+)
LOC120546215 LOC104930085 other upstream 1343454 27028105 ~ 27038228 (+)
LOC120546586 dtnb other upstream 1643879 26695430 ~ 26737803 (+)
G187574 NA other upstream 1696175 26682895 ~ 26685507 (+)
tfap2b tfap2b other upstream 1929317 26438486 ~ 26452365 (+)
tfap2d tfap2d other upstream 1950285 26413691 ~ 26431397 (+)
afdna afdn,LOC102779179 other downstream 156316 28539400 ~ 28649123 (+)
ttll2 ttll2 other downstream 489602 28872686 ~ 28883121 (+)
G188063 NA other downstream 503406 28886490 ~ 28891364 (+)
trim54 trim54,LOC103375614 other downstream 727874 29110958 ~ 29132700 (+)
G188167 ucn other downstream 751087 29134171 ~ 29136917 (+)

Expression


Co-expression Network