LOC120546207


Basic Information

Item Value
gene id LOC120546207
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15289674 ~ 15293252 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780985.1
tgcaatacagaattatgttaattttttaaattatggtcTCATTGAGGTCtcacaggagagaaaacaatCTGTCCTCATCAATAAACCTCTTTACAAATTGTCTGAAAACAAAAGAGGAAATCAGCActgttaaatgtaaaaaataaaaaagttctgtatttttaattttagttttattgaaaactaaaataaatactgtattgATGAGGACAGATTGTTTTGATGAATTTTGATGAATATTGTTGAGGACAGATTGTTTTCTTCTTATGTGGAAATATAGTATAGTTTCTAAAAATGTCAAGCTTTTTTGCTTGGTAGTCTTTCCTATTCCTCTTTACTGTTGACCCGTTTTCCCCAGTGAGCCAACTAAACCCTGACTTAAAAAAGCTCTGTTTGTATAAATGTTCTTGTACTCAGAACTACAGTCAGACCAGTAGCTGTTAAGGTTTTCCACACCAGCAGGTTAAAGATGTTGGCAAATGCAGGAAGTGACATTCCTGTTGACTAATGTTCAGGGTAACAACAGAGAACCTCCAGTGTGCCTTTTCACAGCGAACACATTTGCACACAAGGATGGCTGGAGTTGTTCACACTGGGATGAGGCTGCTATTGTTATCTTTCATCACAACAGGTGTAAATGGAGAAGATGGTCTGATATTTGCCCAACGGGCTTATTCTGTCACATTTCCATGTGAGGAAAATTTAGTCTGCTTTCATGTATGGCAGCTCAGCACAAGCCAAACAATTGATTACATTGCCATAGTCAGTAATGGAGAGATCCAGACAGCTACATCAGTGGATGAGGACTCGAAATGCACTCTGCAAATCAAAGATCTCACAGCGGAAGATGTTGGACGTCATCGTTGCCAACAAAGGCCAGATGTCTTCTCTCGTCACAATAccAGCCCAGAGTTAAAGCTCATGCCTGGCAAAACAGTGTCACTGCAGTGCATTCTCCTCACCTTCGTAGAGGAGGGACATTGCAGAGCACAGCTCCACCAGGTCAGCCTGACGTGGGTGGATGAAGCCGGCACTGAGATACACGAGGACTCACAACATCAGATAAAACAGGAGTCTTTGTGTGCTGTAACTCTGACTCTCACCCTTCAAAGACCTGAAAACAAGAAGTTTAGGTGCCAGGCGACTGTAGGTGAACAAGTCCAGACTTCAGTGGAGTTGCGGGTCAGAGTCCCAGCTCTTAAAGGGAGGGGAAGAGGATTCATCATAGATCTAGAACCCGAAAATCAAGGTGGCGGTGGTAACCAGGACATGATGGGCGCCgctgtgggggtggggggatgtGTGGTTGTGACAGCACTGGTTGCGTTGTTTGTCGTGAATAGAAGAAGAACAAGTAAGTTCTCCTAAACTTCCTGAACCTATAGAGAGGGTGTGTTGCGCCATTGAAAATGGACTCATATTTGGGCACAGACTAGCCCAAACACAGGCTATACACAATCACTTCCATACATGTGTCTACATGCACACGTCTTCTTGCACAATTCTACTTCGTGGTCTTTGAGCACTTACGTTCTGTTTTTTACTGTTCCTTTCATGATGGTAATTGTTTTGCAATTGTAGAGTCACATAACAAAGCTTGAGAAATCTAAACTAGTCTGTACAGCACTGAACATATCATTATATTTAATGGTTAGCCTacatagagagccgaagtcacgccccttccggtggacctcatgggaccttaattcggaaaaaagATGAATGGTAGAGAAtggggagaggcaaattattttttgatcccgtttgaatttaGCATGGATTACACATAtaatgttcgtcaatttaaaagatcatttttcaactgaagaaagtctcagttagctgtaggtttgtcatatgaccacttagttttgtgtgaaaccgctcattgaactacatctctcgtctcacacaatttacgtcacctagcttgatgctcaacttgctcgctagcttTGTGCTATGTTTATTTAGGCAGCCAGGTGCCAGATGAGTCTTGTTACACGGCCAGTACCAACAATGTAAGTCAATTCTCTcacaaataaagtaaaatctTTTGTGCTTTTGGCCATTTTCAAAGGtaatgattgtgtgtgtctgtgtgtttttaggtTATGAATGCAGACGATGTGACAAATTGTGACAAATTGTAGtatatcttttctttatttgtgaGCTCCAACTGTGCTACTGCCATGTGTTTTAATACTGTGAATTGCTCCATACCAAATCCCTGTACTATAACAGATATTTGGCCTTTTGACTCAGCCATTTTGCATTTcaactttagaaaaatgttaaaTTGATATAATTAGTCTACCTCAATATGTTTGACTCTTTTTAAATATGGTAATTCATTCAGCAATGTATTCCCAAATTGTTTTTAATCAGATGATGTATTCATAAAACCCACATTCATTGTTATTTATGGTGCTTCTTATTGTTTTCTTTGCAAAACTGTGTCTGACTGCAGGTCTATAATAAATCAAATGATGACACA
>XR_005636833.1
tgcaatacagaattatgttaattttttaaattatggtcTCATTGAGGTCtcacaggagagaaaacaatCTGTCCTCATCAATAAACCTCTTTACAAATTGTCTGAAAACAAAAGAGGAAATCAGCActgttaaatgtaaaaaataaaaaagttctgtatttttaattttagttttattgaaaactaaaataaatactgtattgATGAGGACAGATTGTTTTGATGAATTTTGATGAATATTGTTGAGGACAGATTGTTTTCTTCTTATGTGGAAATATAGTATAGTTTCTAAAAATGTCAAGCTTTTTTGCTTGGTAGTCTTTCCTATTCCTCTTTACTGTTGACCCGTTTTCCCCAGTGAGCCAACTAAACCCTGACTTAAAAAAGCTCTGTTTGTATAAATGTTCTTGTACTCAGAACTACAGTCAGACCAGTAGCTGTTAAGGTTTTCCACACCAGCAGGTTAAAGATGTTGGCAAATGCAGGAAGTGACATTCCTGTTGACTAATGTTCAGGGTAACAACAGAGAACCTCCAGTGTGCCTTTTCACAGCGAACACATTTGCACACAAGGATGGCTGGAGTTGTTCACACTGGGATGAGGCTGCTATTGTTATCTTTCATCACAACAGGTGTAAATGGAGAAGATGGTCTGATATTTGCCCAACGGGCTTATTCTGTCACATTTCCATGTGAGGAAAATTTAGTCTGCTTTCATGTATGGCAGCTCAGCACAAGCCAAACAATTGATTACATTGCCATAGTCAGTAATGGAGAGATCCAGACAGCTACATCAGTGGATGAGGACTCGAAATGCACTCTGCAAATCAAAGATCTCACAGCGGAAGATGTTGGACGTCATCGTTGCCAACAAAGGCCAGATGTCTTCTCTCGTCACAATAccAGCCCAGAGTTAAAGCTCATGCCTGGCAAAACAGTGTCACTGCAGTGCATTCTCCTCACCTTCGTAGAGGAGGGACATTGCAGAGCACAGCTCCACCAGGTCAGCCTGACGTGGGTGGATGAAGCCGGCACTGAGATACACGAGGACTCACAACATCAGATAAAACAGGAGTCTTTGTGTGCTGTAACTCTGACTCTCACCCTTCAAAGACCTGAAAACAAGAAGTTTAGGTGCCAGGCGACTGTAGGTGAACAAGTCCAGACTTCAGTGGAGTTGCGGGTCAGAGTCCCAGCTCTTAAAGGGAGGGGAAGAGGATTCATCATAGATCTAGAACCCGAAAATCAAGGTGGCGGTGGTAACCAGGACATGATGGGCGCCgctgtgggggtggggggatgtGTGGTTGTGACAGCACTGGTTGCGTTGTTTGTCGTGAATAGAAGAAGAACAAGTAAGTTCTCCTAAACTTCCTGAACCTATAGAGAGGGTGTGTTGCGCCATTGAAAATGGACTCATATTTGGGCACAGACTAGCCCAAACACAGGCTATACACAATCACTTCCATACATGTGTCTACATGCACACGTCTTCTTGCACAATTCTACTTCGTGGTCTTTGAGCACTTACGTTCTGTTTTTTACTGTTCCTTTCATGATGGTAATTGTTTTGCAATTGTAGAGTCACATAACAAAGCTTGAGAAATCTAAACTAGTCTGTACAGCACTGAACATATCATTATATTTAATGGTTAGCCTacatagagagccgaagtcacgccccttccggtggacctcatgggaccttaattcggaaaaaagATGAATGGTAGAGAAtggggagaggcaaattattttttgatcccgtttgaatttaGCATGGATTACACATAtaatgttcgtcaatttaaaagatcatttttcaactgaagaaagtctcagttagctgtaggtttgtcatatgaccacttagttttgtgtgaaaccgctcattgaactacatctctcgtctcacacaatttacgtcacctagcttgatgctcaacttgctcgctagcttTGTGCTATGTTTATTTAGGCAGCCAGGTGCCAGATGAGTCTTGTTACACGGCCAGTACCAACAATgtTATGAATGCAGACGATGTGACAAATTGTGACAAATTGTAGtatatcttttctttatttgtgaGCTCCAACTGTGCTACTGCCATGTGTTTTAATACTGTGAATTGCTCCATACCAAATCCCTGTACTATAACAGATATTTGGCCTTTTGACTCAGCCATTTTGCATTTcaactttagaaaaatgttaaaTTGATATAATTAGTCTACCTCAATATGTTTGACTCTTTTTAAATATGGTAATTCATTCAGCAATGTATTCCCAAATTGTTTTTAATCAGATGATGTATTCATAAAACCCACATTCATTGTTATTTATGGTGCTTCTTATTGTTTTCTTTGCAAAACTGTGTCTGACTGCAGGTCTATAATAAATCAAATGATGACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780985.1 True 2503 mRNA 0.40 5 15289674 15293252
XR_005636833.1 False 2413 transcript 0.40 6 15289674 15293252

Neighbor

gene id symbol gene type direction distance location
slc25a29 LOC103369942,LOC106518591 coding upstream 2823 15277585 ~ 15286851 (+)
ppp2r5cb LOC103369946,LOC101473650,LOC100694131,LOC104924693 coding upstream 116092 15142703 ~ 15173582 (+)
hsp90aa1.2 LOC107100300,LOC103369947,LOC105919227,LOC103155532,LOC103457915 coding upstream 148281 15135367 ~ 15141393 (+)
mgat2 mgat2 coding upstream 172890 15113170 ~ 15116784 (+)
LOC120546410 NA coding upstream 334758 14938918 ~ 14954916 (+)
vrtn vrtn coding downstream 3029 15296281 ~ 15300707 (+)
dll4 dll4,LOC104955063 coding downstream 294831 15588083 ~ 15597893 (+)
chac1 chac1 coding downstream 309083 15602335 ~ 15604166 (+)
zfyve1 LOC100698556 coding downstream 387209 15680461 ~ 15687727 (+)
stx7l stx7 coding downstream 436795 15730047 ~ 15738980 (+)
LOC120547009 NA non-coding upstream 24957 15257133 ~ 15264717 (+)
G184431 NA non-coding upstream 87159 15202306 ~ 15202515 (+)
G184419 NA non-coding upstream 115544 15173690 ~ 15174130 (+)
G184389 NA non-coding upstream 178069 15110243 ~ 15111605 (+)
G184390 NA non-coding upstream 179597 15109634 ~ 15110077 (+)
G184461 NA non-coding downstream 26766 15320018 ~ 15320239 (+)
G184463 NA non-coding downstream 28494 15321746 ~ 15322122 (+)
G184465 NA non-coding downstream 29323 15322575 ~ 15322888 (+)
G184474 NA non-coding downstream 185239 15478491 ~ 15479080 (+)
G184481 NA non-coding downstream 199952 15493204 ~ 15493527 (+)
hsp90aa1.1 LOC103369948 other upstream 154814 15129476 ~ 15134860 (+)
G184258 NA other upstream 760304 14525136 ~ 14529370 (+)
LOC120546619 LOC103359912,LOC102080314 other upstream 864810 14393440 ~ 14424864 (+)
G184231 NA other upstream 908487 14362341 ~ 14381187 (+)
LOC120546742 plcb1 other upstream 1148905 14024484 ~ 14140769 (+)
G184458 NA other downstream 8673 15301925 ~ 15318836 (+)
rhov rhov,LOC102778135,LOC100699098,LOC101469787,LOC102306362,LOC107602886 other downstream 367321 15660573 ~ 15663661 (+)
dpf3 LOC100693327,LOC101467145,LOC103380755,LOC104966071,LOC102779461 other downstream 401692 15694944 ~ 15719632 (+)
LOC120546249 NA other downstream 621334 15914586 ~ 15968123 (+)
nkain2 nkain2 other downstream 954842 16248094 ~ 16391851 (+)

Expression


Co-expression Network