vgll2a (vgll2,LOC102778318)


Basic Information

Item Value
gene id vgll2a
gene name vgll2,LOC102778318
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 28741168 ~ 28748192 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780987.1
AGTGCAGAGCAGAGCAGCGCAGCGCAGCAGAGAGACTCTCTACAGCCTGCTGTGTCCTTCACCGCCGGGATTACCGTTTTCTCTCCGTCTGGACAGACCTGCGCTCTAAATGAAGCTTGGTTCTTCTCCGTGATTTCTTCGCCATGAGCTGCCTGGATGTGATGTACCAAGTGTTCGGTCCTCAGCCTTATTTCAGCTCCTACAGCCCTTATCACCACCAGAAACTGGCCTTGTATACCAAAATGCAAGACCCCCAGGACAGCGGCAGCCGGCTCGGACCCCCGGGCCCCCCGTCTATCAAAGAGGAGGACAAGGAGCTGCCGCCGGGAGCCGAGTACCTGAGCTCTCGCTGCGTCCTCTTCACTTACTTCCAGGGAGACATCAGCGCTGTGGTGGACGAACACTTCAGCCGAGCCCTCAGCCACACAACCGCGTACCCTGCCTCAAGCAGCCACAAGGCcgtcagagatgGATCATTCCCGATGAGCCAGAGAAGTTTCCCTCCGTCTTTCTGGAACAGTTCCTATCAGCCGTCAGTCTCCTCTACGCTCGGCAGCGCTCTGTCAGCTCCTCACACAGAGCTCCCCTTCCCTGGGGACCCGTACTCCTCTGCCTCCCTGCACAGCCACCTCCATCAGCCCAGCCCTGACTCCTGGCACCCatcccatcaccaccaccatcaccaccaccacccgtactcactagggggcgctataggcAGCCAGGGCTCAGCATACCCGCGTCCAGGGGTTCACGAGATGTACGGCACGGCGTTTGACCCACGTTACGGTTCTCTGTTGGTGCCATCAGTGAGGCCTCATCACCGTCTGACGTCCGGCAGCTCGGTACCGGGACCCAGCGCCTCGCCCTGTGACCTGGGAGGGAAAGGGGATTCAGGGACGGGTTCGGCCTGGAGTGGCGCCTTCACTGGAGCCGGCGCAGAAATCGGACTCAACATGGACACAGCTCGTTGTTACGGAGGACTTTGCAGCAGCAGTACAGCCCTGCTAAGCTGAAAGCTGACAGTGTGGATACAAAACGAGCGTGGAAACAAAAGCGAACtcacagaggagacagagaatCTGGCCTTGACGGATGTGGACAAAGACAAGACTCTTTGTGCTTCTGTAACAGGCAGGGACAACATTCCTAAACTTGAAAAAGTCTGgggacagacggacagagacATGTGCTGTCAAACTCCAAAGACAAGCGCTTGAAGGACTTGGCAGGACTTGCCTCACTGGGACAACTGGGCAACAGACACTGGGAGTGTTGTGGCTGGAGGAAAGGCTGTGCTGGTGTTGAGGAGGCCGCACAGCAAGAATTTGGCAGACTGTGAAGGCAGGAGGAGTCCAAACACTTTGGTTTACATGGAGTATTGGTTCAAtgttaactgaaaaaaaaaacactgtcagTATTTTATGGCACTGTACAAGTTAAATTAAACAGTTCTGACTGATAACAAAA
>XM_039780988.1
AGTGCAGAGCAGAGCAGCGCAGCGCAGCAGAGAGACTCTCTACAGCCTGCTGTGTCCTTCACCGCCGGGATTACCGTTTTCTCTCCGTCTGGACAGACCTGCGCTCTAAATGAAGCTTGGTTCTTCTCCGTGATTTCTTCGCCATGAGCTGCCTGGATGTGATGTACCAAGTGTTCGGTCCTCAGCCTTATTTCAGCTCCTACAGCCCTTATCACCACCAGAAACTGGCCTTGTATACCAAAATGCAAGACCCCCAGGACAGCGGCAGCCGGCTCGGACCCCCGGGCCCCCCGTCTATCAAAGAGGAGGACAAGGAGCTGCCGCCGGGAGCCGAGTACCTGAGCTCTCGCTGCGTCCTCTTCACTTACTTCCAGGGAGACATCAGCGCTGTGGTGGACGAACACTTCAGCCGAGCCCTCAGCCACACAACCGCGTACCCTGCCTCAAGCAGCCACAAGGCcgtcagagatgGATCATTCCCGATGAGCCAGAGAAGTTTCCCTCCGTCTTTCTGGAACAGTTCCTATCAGCCGTCAGTCTCCTCTACGCTCGGCAGCGCTCTGTCAGCTCCTCACACAGAGCTCCCCTTCCCTGGGGACCCGTACTCCTCTGCCTCCCTGCACAGCCACCTCCATCAGCCCAGCCCTGACTCCTGGCACCCatcccatcaccaccaccatcaccaccaccacccgtactcactagggggcgctataggcAGCCAGGGCTCAGCATACCCGCGTCCAGGGGTTCACGAGATGTACGGCACGGCGTTTGACCCACGTTACGGTTCTCTGTTGGTGCCATCAGTGAGGCCTCATCACCGTCTGACGTCCGGCAGCTCGGTACCGGGACCCAGCGCCTCGCCCTGTGACCTGGGAGGGAAAGGGGATTCAGGGACGGGTTCGGCCTGGAGTGGCGCCTTCACTGGAGCCGGCGCAGAAATCGGACTCAACATGGACACAGgTCTGCAGGCACAGGATAAGAGCAAGGATTTGTATTGGTTTTAGACACTGCTGAGACTCTTCCCTCCAGCTTCACTCCTACTTCAACTGTAGCCTCTTTCCTATACTCCTCCTGCTCTCCTCTGTTGCTCTGCTGCTGTTATGGGATTTCTGAGAGAGAAACTGAAAATCAATCAGATGGCAGTTTTGTGCTGTAACTGCTTCTGGTCTACTTGCAGCTCGTTGTTACGGAGGACTTTGCAGCAGCAGTACAGCCCTGCTAAGCTGAAAGCTGACAGTGTGGATACAAAACGAGCGTGGAAACAAAAGCGAACtcacagaggagacagagaatCTGGCCTTGACGGATGTGGACAAAGACAAGACTCTTTGTGCTTCTGTAACAGGCAGGGACAACATTCCTAAACTTGAAAAAGTCTGgggacagacggacagagacATGTGCTGTCAAACTCCAAAGACAAGCGCTTGAAGGACTTGGCAGGACTTGCCTCACTGGGACAACTGGGCAACAGACACTGGGAGTGTTGTGGCTGGAGGAAAGGCTGTGCTGGTGTTGAGGAGGCCGCACAGCAAGAATTTGGCAGACTGTGAAGGCAGGAGGAGTCCAAACACTTTGGTTTACATGGAGTATTGGTTCAAtgttaactgaaaaaaaaaacactgtcagTATTTTATGGCACTGTACAAGTTAAATTAAACAGTTCTGACTGATAACAAAA

Function

symbol description
vgll2 Predicted to enable protein C-terminus binding activity and transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II and skeletal muscle tissue development. Predicted to be located in cytoplasm. Predicted to be active in nucleus.

NR:

description
transcription cofactor vestigial-like protein 2 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780987.1 False 1470 mRNA 0.56 4 28741168 28748192
XM_039780988.1 True 1687 mRNA 0.54 4 28741168 28748192

Neighbor

gene id symbol gene type direction distance location
rfx6 rfx6,LOC102778618,LOC102305591,LOC102193265 coding upstream 51577 28669262 ~ 28689591 (+)
ncoa1 ncoa1 coding upstream 274295 28393107 ~ 28466873 (+)
ptrhd1 ptrhd1,LOC102782396,LOC103399259 coding upstream 358084 28381682 ~ 28383084 (+)
fam184ab fam184a,LOC101465847,LOC102781517 coding upstream 361320 28203630 ~ 28379848 (+)
man1a1 man1a1,LOC102782693 coding upstream 578548 28001397 ~ 28162620 (+)
plg plg coding downstream 25133 28773325 ~ 28786818 (+)
LOC120547119 NA coding downstream 118021 28866213 ~ 28872603 (+)
gpr31 NA coding downstream 154184 28902376 ~ 28906380 (+)
LOC120547117 gpr31,LOC104934219,LOC104957175 coding downstream 169099 28917291 ~ 28924763 (+)
slc30a2 slc30a3,LOC102796772 coding downstream 447977 29196169 ~ 29220727 (+)
trnal-cag_2 NA non-coding upstream 88484 28652602 ~ 28652684 (+)
G187918 NA non-coding upstream 195653 28472115 ~ 28545515 (+)
LOC120546306 NA non-coding upstream 236777 28500729 ~ 28504391 (+)
G187915 NA non-coding upstream 320906 28419992 ~ 28420262 (+)
G187906 NA non-coding upstream 363528 28365238 ~ 28377640 (+)
G188057 NA non-coding downstream 130556 28878748 ~ 28880435 (+)
G188069 NA non-coding downstream 166210 28914402 ~ 28914798 (+)
G188091 NA non-coding downstream 182866 28931058 ~ 28944726 (+)
G188097 NA non-coding downstream 225407 28973599 ~ 28973911 (+)
G188100 NA non-coding downstream 228778 28976970 ~ 28977625 (+)
afdna afdn,LOC102779179 other upstream 92045 28539400 ~ 28649123 (+)
LOC120546215 LOC104930085 other upstream 1702940 27028105 ~ 27038228 (+)
LOC120546586 dtnb other upstream 2003365 26695430 ~ 26737803 (+)
G187574 NA other upstream 2055661 26682895 ~ 26685507 (+)
tfap2b tfap2b other upstream 2288803 26438486 ~ 26452365 (+)
ttll2 ttll2 other downstream 124494 28872686 ~ 28883121 (+)
G188063 NA other downstream 138298 28886490 ~ 28891364 (+)
trim54 trim54,LOC103375614 other downstream 362766 29110958 ~ 29132700 (+)
G188167 ucn other downstream 385979 29134171 ~ 29136917 (+)
si:ch211-245h14.1 NA other downstream 544513 29292705 ~ 29312364 (+)

Expression


Co-expression Network