LOC120546227 (htr1e)


Basic Information

Item Value
gene id LOC120546227
gene name htr1e
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 4871142 ~ 4914191 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781005.1
atgtcagTTGTAGGCTATTTACTATATTGTCGAGTCATTGACGTGCTGACGAGTAATAATCACAACATTTCCGACATCACTTgaaggcggcagcagcagcagcagcagcagcagcagcttgatttatggttctaACGACAGCCTCGGCAGGAGAAGAGACGAACAGCAGCCACTGAGCGCTGACGGGATACTCGTTCCGCGAATTAATGCACGCGGGCATcataagtttattttttatgtttgccCATCATGATGTGAAGAGAGCTGAGAAAACGCTGCAGCTTTGTGCAACAGGAGCGCAAAACTCACATCACACCTATTTTTGATTCTTACTTATAACATGCGGGATGAGAGAGGGCTTCGTGACGAAACCTCAATGACCTTTGACTCGTGAGGGAGCGTTGTCTCCCTGGGAGGGAGGAAGTGGCCAGCCCAGGTCTAGGGATGGACAAGGAAAGCTACCCAGGGTGGAGCGCCTGGGGACCCAACATCACAAACTGCACCGTCCCACCTGCCAGCAGCCGGCAGGCAATCCAATTCACAGACGGGATGGCGGTGGTGGTTGTTGTTCTCAGCCTCCTTACCTTCCTCACTGCGCTCATTAATGCCGCTGTCATCATCGCCATCTGCACCACCAAGAAGCTCCACCTGCCCGCCAACTACCTCATCTGCTCTCTGGCTGTCACTGACTTCCTGGTGGCGCTCCTCGTGATGCCCATAAGCATCCTCTACATCACCATGGAGACATGGTCCCTGGGTCAGGTGGTGTGCGAGTTGTGGTTGAGCATGGACATGACCTGCTGTACCTGCTCCATCCTGCACCTGTGCGTCATTGCCCTGGACCGGTACTGGGCCATCACCAAAGCTATCGAGTATGTTCGCAAGAGGTCGGCCCGTCGCGCAGCCATCATGGTGGGAATAGTCTGGGTCATCTCAGTTTTAATATCCATGCCACCCTTGTTCTGGAGGCAGAGGCCAAGCAGTGGCAGCCTCCAACAGTGCATCATAGAGCATGATCACCTGGGATACACTATATACTCTACTTTTGGGGCATTTTACATTCCCATGTTCATCATTCTTATCTTATACTACAGGATTTACAATGCCGCAAAAACTCTTTACCAGAAGCGTGGCTCTTCTCGCCACCTCAGCAGCCGCAGCATGGGCAGTCAGAACTCTGTAGACCATTACCGTGTCTCCCACACATTTTGTATGTCGTACTTGTCCAACTCGGATCCGATGCTCGCTACTGACAAACTCAACACTACCATCCGCGTCTCATCCTTTGACACAGACATGGAAGGGCAGGATGAGAAGAACCAAATATGTACCTCACGTGAAAGGAAAGCAGCTCGAATCCTCGGCCTCATCCTTGGGGCCTTCATTATCTGCTGGCTGCCTTTCTTTTCAAAGGAGGTCCTAGTGGGTCTACAAATGGTTCAGCCTTCTCCGCTTATATCAGACTTCCTGACATGGCTGGGTTACATCAACTCTCTCATTAACCCCCTGCTGTACACCAGCTTCAATGACGATTTCAAaatggcttttaaaaagctactCAAGATAAAAGAGCATGCATAGGTTTGAGGTTAAAAGGGAATGTATACACCTTTAACTAAGTTGCAATATGTGTACTGCCAATATGAAGTGTGATGTGCTTTTCACAAACAATACATTGCCTGTTTTTTTCAATAAATGAATTATTTATAACTAC
>XM_039781006.1
cgtaaatgcagtgtcccaggctgtaaaactgaatGCGCTGACTAGCTACAGGACCTTTGACTCGTGAGGGAGCGTTGTCTCCCTGGGAGGGAGGAAGTGGCCAGCCCAGGTCTAGGGATGGACAAGGAAAGCTACCCAGGGTGGAGCGCCTGGGGACCCAACATCACAAACTGCACCGTCCCACCTGCCAGCAGCCGGCAGGCAATCCAATTCACAGACGGGATGGCGGTGGTGGTTGTTGTTCTCAGCCTCCTTACCTTCCTCACTGCGCTCATTAATGCCGCTGTCATCATCGCCATCTGCACCACCAAGAAGCTCCACCTGCCCGCCAACTACCTCATCTGCTCTCTGGCTGTCACTGACTTCCTGGTGGCGCTCCTCGTGATGCCCATAAGCATCCTCTACATCACCATGGAGACATGGTCCCTGGGTCAGGTGGTGTGCGAGTTGTGGTTGAGCATGGACATGACCTGCTGTACCTGCTCCATCCTGCACCTGTGCGTCATTGCCCTGGACCGGTACTGGGCCATCACCAAAGCTATCGAGTATGTTCGCAAGAGGTCGGCCCGTCGCGCAGCCATCATGGTGGGAATAGTCTGGGTCATCTCAGTTTTAATATCCATGCCACCCTTGTTCTGGAGGCAGAGGCCAAGCAGTGGCAGCCTCCAACAGTGCATCATAGAGCATGATCACCTGGGATACACTATATACTCTACTTTTGGGGCATTTTACATTCCCATGTTCATCATTCTTATCTTATACTACAGGATTTACAATGCCGCAAAAACTCTTTACCAGAAGCGTGGCTCTTCTCGCCACCTCAGCAGCCGCAGCATGGGCAGTCAGAACTCTGTAGACCATTACCGTGTCTCCCACACATTTTGTATGTCGTACTTGTCCAACTCGGATCCGATGCTCGCTACTGACAAACTCAACACTACCATCCGCGTCTCATCCTTTGACACAGACATGGAAGGGCAGGATGAGAAGAACCAAATATGTACCTCACGTGAAAGGAAAGCAGCTCGAATCCTCGGCCTCATCCTTGGGGCCTTCATTATCTGCTGGCTGCCTTTCTTTTCAAAGGAGGTCCTAGTGGGTCTACAAATGGTTCAGCCTTCTCCGCTTATATCAGACTTCCTGACATGGCTGGGTTACATCAACTCTCTCATTAACCCCCTGCTGTACACCAGCTTCAATGACGATTTCAAaatggcttttaaaaagctactCAAGATAAAAGAGCATGCATAGGTTTGAGGTTAAAAGGGAATGTATACACCTTTAACTAAGTTGCAATATGTGTACTGCCAATATGAAGTGTGATGTGCTTTTCACAAACAATACATTGCCTGTTTTTTTCAATAAATGAATTATTTATAACTAC
>XM_039781007.1
tttttacaagcacaGTTTTTTGAACACCAAAGTTAGGGGGACAGCTGGGGGGGGTAAGGCCCTACAGTGAGATCATGCAGACCTTAAGACCTTTGACTCGTGAGGGAGCGTTGTCTCCCTGGGAGGGAGGAAGTGGCCAGCCCAGGTCTAGGGATGGACAAGGAAAGCTACCCAGGGTGGAGCGCCTGGGGACCCAACATCACAAACTGCACCGTCCCACCTGCCAGCAGCCGGCAGGCAATCCAATTCACAGACGGGATGGCGGTGGTGGTTGTTGTTCTCAGCCTCCTTACCTTCCTCACTGCGCTCATTAATGCCGCTGTCATCATCGCCATCTGCACCACCAAGAAGCTCCACCTGCCCGCCAACTACCTCATCTGCTCTCTGGCTGTCACTGACTTCCTGGTGGCGCTCCTCGTGATGCCCATAAGCATCCTCTACATCACCATGGAGACATGGTCCCTGGGTCAGGTGGTGTGCGAGTTGTGGTTGAGCATGGACATGACCTGCTGTACCTGCTCCATCCTGCACCTGTGCGTCATTGCCCTGGACCGGTACTGGGCCATCACCAAAGCTATCGAGTATGTTCGCAAGAGGTCGGCCCGTCGCGCAGCCATCATGGTGGGAATAGTCTGGGTCATCTCAGTTTTAATATCCATGCCACCCTTGTTCTGGAGGCAGAGGCCAAGCAGTGGCAGCCTCCAACAGTGCATCATAGAGCATGATCACCTGGGATACACTATATACTCTACTTTTGGGGCATTTTACATTCCCATGTTCATCATTCTTATCTTATACTACAGGATTTACAATGCCGCAAAAACTCTTTACCAGAAGCGTGGCTCTTCTCGCCACCTCAGCAGCCGCAGCATGGGCAGTCAGAACTCTGTAGACCATTACCGTGTCTCCCACACATTTTGTATGTCGTACTTGTCCAACTCGGATCCGATGCTCGCTACTGACAAACTCAACACTACCATCCGCGTCTCATCCTTTGACACAGACATGGAAGGGCAGGATGAGAAGAACCAAATATGTACCTCACGTGAAAGGAAAGCAGCTCGAATCCTCGGCCTCATCCTTGGGGCCTTCATTATCTGCTGGCTGCCTTTCTTTTCAAAGGAGGTCCTAGTGGGTCTACAAATGGTTCAGCCTTCTCCGCTTATATCAGACTTCCTGACATGGCTGGGTTACATCAACTCTCTCATTAACCCCCTGCTGTACACCAGCTTCAATGACGATTTCAAaatggcttttaaaaagctactCAAGATAAAAGAGCATGCATAGGTTTGAGGTTAAAAGGGAATGTATACACCTTTAACTAAGTTGCAATATGTGTACTGCCAATATGAAGTGTGATGTGCTTTTCACAAACAATACATTGCCTGTTTTTTTCAATAAATGAATTATTTATAACTAC
>XM_039781009.1
CCTTGAACAGGACCCAGTCCGAGCACAACAATCAGCAGGTGTCTGTGGGAGTCAGACCTTTGACTCGTGAGGGAGCGTTGTCTCCCTGGGAGGGAGGAAGTGGCCAGCCCAGGTCTAGGGATGGACAAGGAAAGCTACCCAGGGTGGAGCGCCTGGGGACCCAACATCACAAACTGCACCGTCCCACCTGCCAGCAGCCGGCAGGCAATCCAATTCACAGACGGGATGGCGGTGGTGGTTGTTGTTCTCAGCCTCCTTACCTTCCTCACTGCGCTCATTAATGCCGCTGTCATCATCGCCATCTGCACCACCAAGAAGCTCCACCTGCCCGCCAACTACCTCATCTGCTCTCTGGCTGTCACTGACTTCCTGGTGGCGCTCCTCGTGATGCCCATAAGCATCCTCTACATCACCATGGAGACATGGTCCCTGGGTCAGGTGGTGTGCGAGTTGTGGTTGAGCATGGACATGACCTGCTGTACCTGCTCCATCCTGCACCTGTGCGTCATTGCCCTGGACCGGTACTGGGCCATCACCAAAGCTATCGAGTATGTTCGCAAGAGGTCGGCCCGTCGCGCAGCCATCATGGTGGGAATAGTCTGGGTCATCTCAGTTTTAATATCCATGCCACCCTTGTTCTGGAGGCAGAGGCCAAGCAGTGGCAGCCTCCAACAGTGCATCATAGAGCATGATCACCTGGGATACACTATATACTCTACTTTTGGGGCATTTTACATTCCCATGTTCATCATTCTTATCTTATACTACAGGATTTACAATGCCGCAAAAACTCTTTACCAGAAGCGTGGCTCTTCTCGCCACCTCAGCAGCCGCAGCATGGGCAGTCAGAACTCTGTAGACCATTACCGTGTCTCCCACACATTTTGTATGTCGTACTTGTCCAACTCGGATCCGATGCTCGCTACTGACAAACTCAACACTACCATCCGCGTCTCATCCTTTGACACAGACATGGAAGGGCAGGATGAGAAGAACCAAATATGTACCTCACGTGAAAGGAAAGCAGCTCGAATCCTCGGCCTCATCCTTGGGGCCTTCATTATCTGCTGGCTGCCTTTCTTTTCAAAGGAGGTCCTAGTGGGTCTACAAATGGTTCAGCCTTCTCCGCTTATATCAGACTTCCTGACATGGCTGGGTTACATCAACTCTCTCATTAACCCCCTGCTGTACACCAGCTTCAATGACGATTTCAAaatggcttttaaaaagctactCAAGATAAAAGAGCATGCATAGGTTTGAGGTTAAAAGGGAATGTATACACCTTTAACTAAGTTGCAATATGTGTACTGCCAATATGAAGTGTGATGTGCTTTTCACAAACAATACATTGCCTGTTTTTTTCAATAAATGAATTATTTATAACTAC

Function

symbol description
htr1e Enables G protein-coupled serotonin receptor activity and serotonin binding activity. Involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway. Is integral component of plasma membrane.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: 5-hydroxytryptamine receptor 1E

GO: NA

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781005.1 True 1714 mRNA 0.49 2 4871142 4914191
XM_039781006.1 False 1387 mRNA 0.50 2 4871142 4906469
XM_039781007.1 False 1423 mRNA 0.50 2 4871142 4894057
XM_039781009.1 False 1390 mRNA 0.50 2 4871142 4905513

Neighbor

gene id symbol gene type direction distance location
znf292b NA coding downstream 18059 4819147 ~ 4853083 (-)
cenpe cenpe coding downstream 86824 4743144 ~ 4784318 (-)
rad51 rad51 coding downstream 129497 4731388 ~ 4741645 (-)
si:ch211-241j12.4 LOC103354013 coding downstream 168418 4685533 ~ 4702724 (-)
LOC120547250 LOC104919706,LOC106571281 coding downstream 189572 4655856 ~ 4681570 (-)
LOC120546193 NA coding upstream 200988 5115179 ~ 5123781 (-)
LOC120547277 NA coding upstream 333754 5247945 ~ 5253700 (-)
LOC120547345 NA coding upstream 345274 5259465 ~ 5279720 (-)
lrfn2b LOC103354004,LOC104943823 coding upstream 474962 5389153 ~ 5588237 (-)
gopc gopc coding upstream 1072246 5986437 ~ 6009440 (-)
G182317 NA non-coding downstream 52180 4818699 ~ 4818962 (-)
G182302 NA non-coding downstream 61562 4809078 ~ 4809580 (-)
G182276 rmdn3 non-coding downstream 149373 4719917 ~ 4721769 (-)
G182202 NA non-coding downstream 280138 4590793 ~ 4591004 (-)
LOC120546262 NA non-coding downstream 316654 4546168 ~ 4554488 (-)
G182325 NA non-coding upstream 293 4914484 ~ 4914701 (-)
G182329 NA non-coding upstream 61373 4975564 ~ 4975936 (-)
G182348 NA non-coding upstream 185997 5100188 ~ 5100452 (-)
LOC120547022 NA non-coding upstream 198050 5112241 ~ 5113721 (-)
G182356 NA non-coding upstream 211622 5125813 ~ 5126021 (-)
smim8 smim8 other downstream 67650 4745773 ~ 4803492 (-)
G182121 NA other downstream 705146 4163358 ~ 4165996 (-)
trnav-aac_21 NA other downstream 715310 4155760 ~ 4155832 (-)
trnav-aac_20 NA other downstream 722164 4148907 ~ 4148978 (-)
G182102 NA other downstream 770662 4100010 ~ 4100480 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other upstream 397315 5311506 ~ 5313715 (-)
G182474 NA other upstream 876098 5790289 ~ 5792938 (-)
G182502 NA other upstream 997121 5911312 ~ 5911909 (-)
cgrrf1 NA other upstream 1318551 6232742 ~ 6269143 (-)
G182764 NA other upstream 1786300 6700491 ~ 6701117 (-)

Expression


Co-expression Network