LOC120546266 (slc23a2,LOC100699458,LOC101468039,LOC108231760,LOC106518547,LOC102297661)


Basic Information

Item Value
gene id LOC120546266
gene name slc23a2,LOC100699458,LOC101468039,LOC108231760,LOC106518547,LOC102297661
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13911571 ~ 13918124 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781103.1
CTTTATTTTTCCAATTCACCTCTTGTGAGAAGAACTCCACCTCAAGAAGTCAGTTTTTTTAACTTATAGTGGAGTTGCAATGGCTTCAGGGAAGGAAAGTTGTGGACTTGACAATCTTGCATTTGATATGGATGTCAATGATCAACAAAGAGGAAAGGACGGAAAGAAGGATGAGGAAGACACAAATAAACCAACCTATTGTGTGACTGATGTTCCACCCTGGTACCTTTGCACTTTTCTGGCCATACAGCATTACATGACAGCTTTCGGTGGGATCGTCTCCATCCCCCTCATTCTCTCGGAGGGGCTGTGTCTGCAGCACGACAGCCTGACCCAGAGTTACCTCATCAACACCATTTTCTTCACCTCGGGCCTGATCACTGTGCTGCAGGTCACCTTCGGTGTAAGGCTTCCCATCCTGCAGGGGGGTACATTTGCTTTGGTGACCCCTGCCATGGCCATGTTGTCCATGCCAGAGTGGAAATGCCCAGCTTGGACCCAGAACGCCAGTCTGGTCAACACGTCCTCACCTCTCTTTATAGAAGTGTGGCAGACCCGCATGAGAACACTGCAGGGCTCTATCATGGTGGCCTCTGTCCTCCAGATTCTGGTTGGCTTCTCTGGGCTCATCGGCTTCCTCATGCACTTCATTGGCCCCTTAACCATTGCCCCCACAGTTTCTCTCATAGGCCTGTCACTGTACGATTCAGCTGGAGACAAGGTTGGCAGCCACTGGGGCATCTCTGCTATGACCACAGTGCTGATCATCTTGTTCTCCCAGTACCTCCGTCGCATACCAATCCTTGTTCCTGCATATAGCAAAGCCAAGAAACTGCACACCTCAAAGTTCTATATCTTCCAAATAATGCCTATTCTACTGGGCATTTCGGTTTCATGGTTAGTCTGCTACCTCCTCACTATCTATGATGTCCTACCATCGGATCCAGCCCAATATGGCCACCTGGCTCGCACTGATGTGAAGGGAGATGTGCTGAACAAGGCTTCCTGGTTCACATTTCCTTATCCTGGTCAGTGGGGCATGCCAACTGTGAGCCTGGCAGGTGTGTTTGGCATGATGGCTGGAATAATATGCTCCATGGCAGAGTCTGTGGGCGACTACCACGCATGTGCCAGGCTGTCAGGGGCGCCTCCCCCTCCCAAGCACGCCATCAGCCGGGGCATTGGTGTCGAAGGGCTCGGCAGTTTGTTGGCAGGGGCCTTCGGCACAGGCAACGGCACTACCTCATTTAGTGAGAACGTGGCTGCCCTGGGTATCACCAAAGTAGGTAGCCGAATGGTGATTCTTCTGAGTGGCGTTTTCATGATATTGATAGGGATGCTGGGTAAAATTGGAGCCATCTTCACCACTATCCCCACCCCCGTGGTGGGAGGGATGTTCCTGATCATGTTTGGAGTCATAACTGCAGCAGGAATTTCTAATCTGCAGTCCACAGACATGAATTCCTCCAggaatatatttgtttttggtttttccaTGTTTTCTGCACTCGTTATTCCGAACTGGATAATGAAGAATCCTGATTTCTTAGAAACAGGTGTTGAAGAGGTAGACCAAGTGTTGCGCATATTGTTGACCACACACATGTTCATCGGAGGGTTTCTTGGCTTCTTCCTAGATAACACAATTCCTGGGACCAAAAGTGAGCGTGGCCTCTTAGCCTGGAACAAAGTACATCTTGAGGACTCGAGCTACACCTTGGCAACTGAAGAGGTGTATGACCTCCCTTTTGGAATAACCTCTTGCCTATCGTCCCAATCTTGGGTTCGTTACATCCCCTTCTGCCCATGGAACGGCCACAGATCTGAGAACAGGTCGGAAGACAACAAAATGCCACAAGGCCGAGGGAGTGAGCAACTGCCCCACAGCACATGGGTCATTGATGAATTAGCCTTCTAGCTTTCTAGTTTGCTGAACTAGAGGTGGTGTGATAAAATGAAATCTCTCAAATCCTCTCTTTTTAGGTCAAACTGCTGTTTCTGATAAATGAAAAGGGGTCACAGAAATATTGTCTAAGGAATCTTTAGACTATAGCCATCACTGGTTGATAAGGTCAAGATTTATGTTTAGGTATTTCACTGTCCTATGTAATAAACTGCCAGCAGTGGGTTTTATTTTGCtgtgtaaaacatgttttcaataTGCGAGCCTGACTagtggcggttctacattgaatgacGCCCCAGCCCTAtttttatataggctacattattGTATTTAacatcattgtttttttggttttgttattTCAATACTGGAATTCTAAATCAATCTGTTGAAATGCACTAACAAACTACTACAATAACTAATAACTATATGATCTAAGCTAAATGTATGAATGATATGCTATGAATTTATTGAATGGATGTTTCCTACTAACATCCCAAAAAAAGATGAGTGATGTGTCTTCACCTACAGCAGGCCTACTTAAAGAGATGCTGCATCTACTGTATGACTTCAGCTATGTGATCAATGATCAATGTTATGGCTTTGAGCTCAAGTTAATCTCTGTTATAGAATGTGACCAATGTgcaatatacaaaataaaaagcaaatttTATATG
>XM_039781104.1
CTTTATTTTTCCAATTCACCTCTTGTGAGAAGAACTCCACCTCAAGAAGTCAGTTTTTTTAACTTATAGTGGAGTTGCAATGGCTTCAGGGAAGGAAAGTTGTGGACTTGACAATCTTGCATTTGATATGGATGTCAATGATCAACAAAGAGGAAAGGACGGAAAGAAGGATGAGGAAGACACAAATAAACCAACCTATTGTGTGACTGATGTTCCACCCTGGTACCTTTGCACTTTTCTGGCCATACAGCATTACATGACAGCTTTCGGTGGGATCGTCTCCATCCCCCTCATTCTCTCGGAGGGGCTGTGTCTGCAGCACGACAGCCTGACCCAGAGTTACCTCATCAACACCATTTTCTTCACCTCGGGCCTGATCACTGTGCTGCAGGTCACCTTCGGTGTAAGGCTTCCCATCCTGCAGGGGGGTACATTTGCTTTGGTGACCCCTGCCATGGCCATGTTGTCCATGCCAGAGTGGAAATGCCCAGCTTGGACCCAGAACGCCAGTCTGGTCAACACGTCCTCACCTCTCTTTATAGAAGTGTGGCAGACCCGCATGAGAACACTGCAGGGCTCTATCATGGTGGCCTCTGTCCTCCAGATTCTGGTTGGCTTCTCTGGGCTCATCGGCTTCCTCATGCACTTCATTGGCCCCTTAACCATTGCCCCCACAGTTTCTCTCATAGGCCTGTCACTGTACGATTCAGCTGGAGACAAGGTTGGCAGCCACTGGGGCATCTCTGCTATGACCACAGTGCTGATCATCTTGTTCTCCCAGTACCTCCGTCGCATACCAATCCTTGTTCCTGCATATAGCAAAGCCAAGAAACTGCACACCTCAAAGTTCTATATCTTCCAAATAATGCCTATTCTACTGGGCATTTCGGTTTCATGGTTAGTCTGCTACCTCCTCACTATCTATGATGTCCTACCATCGGATCCAGCCCAATATGGCCACCTGGCTCGCACTGATGTGAAGGGAGATGTGCTGAACAAGGCTTCCTGGTTCACATTTCCTTATCCTGGTCAGTGGGGCATGCCAACTGTGAGCCTGGCAGGTGTGTTTGGCATGATGGCTGGAATAATATGCTCCATGGCAGAGTCTGTGGGCGACTACCACGCATGTGCCAGGCTGTCAGGGGCGCCTCCCCCTCCCAAGCACGCCATCAGCCGGGGCATTGGTGTCGAAGGGCTCGGCAGTTTGTTGGCAGGGGCCTTCGGCACAGGCAACGGCACTACCTCATTTAGTGAGAACGTGGCTGCCCTGGGTATCACCAAAGTAGGTAGCCGAATGGTGATTCTTCTGAGTGGCGTTTTCATGATATTGATAGGGATGCTGGGTAAAATTGGAGCCATCTTCACCACTATCCCCACCCCCGTGGTGGGAGGGATGTTCCTGATCATGTTTGGAGTCATAACTGCAGCAGGAATTTCTAATCTGCAGAATCCTGATTTCTTAGAAACAGGTGTTGAAGAGGTAGACCAAGTGTTGCGCATATTGTTGACCACACACATGTTCATCGGAGGGTTTCTTGGCTTCTTCCTAGATAACACAATTCCTGGGACCAAAAGTGAGCGTGGCCTCTTAGCCTGGAACAAAGTACATCTTGAGGACTCGAGCTACACCTTGGCAACTGAAGAGGTGTATGACCTCCCTTTTGGAATAACCTCTTGCCTATCGTCCCAATCTTGGGTTCGTTACATCCCCTTCTGCCCATGGAACGGCCACAGATCTGAGAACAGGTCGGAAGACAACAAAATGCCACAAGGCCGAGGGAGTGAGCAACTGCCCCACAGCACATGGGTCATTGATGAATTAGCCTTCTAGCTTTCTAGTTTGCTGAACTAGAGGTGGTGTGATAAAATGAAATCTCTCAAATCCTCTCTTTTTAGGTCAAACTGCTGTTTCTGATAAATGAAAAGGGGTCACAGAAATATTGTCTAAGGAATCTTTAGACTATAGCCATCACTGGTTGATAAGGTCAAGATTTATGTTTAGGTATTTCACTGTCCTATGTAATAAACTGCCAGCAGTGGGTTTTATTTTGCtgtgtaaaacatgttttcaataTGCGAGCCTGACTagtggcggttctacattgaatgacGCCCCAGCCCTAtttttatataggctacattattGTATTTAacatcattgtttttttggttttgttattTCAATACTGGAATTCTAAATCAATCTGTTGAAATGCACTAACAAACTACTACAATAACTAATAACTATATGATCTAAGCTAAATGTATGAATGATATGCTATGAATTTATTGAATGGATGTTTCCTACTAACATCCCAAAAAAAGATGAGTGATGTGTCTTCACCTACAGCAGGCCTACTTAAAGAGATGCTGCATCTACTGTATGACTTCAGCTATGTGATCAATGATCAATGTTATGGCTTTGAGCTCAAGTTAATCTCTGTTATAGAATGTGACCAATGTgcaatatacaaaataaaaagcaaatttTATATG

Function

symbol description
slc23a2 Predicted to enable transmembrane transporter activity. Predicted to be involved in L-ascorbic acid metabolic process. Predicted to act upstream of or within L-ascorbic acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC23A2 (solute carrier family 23 member 2).

NR:

description
PREDICTED: solute carrier family 23 member 2

GO: NA

KEGG:

id description
K14611 SLC23A1, SVCT1; solute carrier family 23 (nucleobase transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781103.1 True 2583 mRNA 0.46 12 13911571 13918124
XM_039781104.1 False 2496 mRNA 0.46 12 13911571 13918124

Neighbor

gene id symbol gene type direction distance location
gpcpd1 gpcpd1 coding downstream 1439 13889340 ~ 13910132 (-)
napbb napb,LOC103381049,LOC102194491,LOC102306363,LOC106518545,LOC102225024,LOC103457862,LOC107097573,LOC107378120 coding downstream 24401 13877232 ~ 13887170 (-)
trib2 trib2 coding downstream 84529 13819672 ~ 13827042 (-)
LOC120546185 klhl29,LOC102787074 coding downstream 109411 13579311 ~ 13802160 (-)
ubxn2a ubxn2a coding downstream 410977 13494938 ~ 13500594 (-)
trmt6 trmt6 coding upstream 20489 13938613 ~ 13944833 (-)
fermt1 fermt1 coding upstream 28580 13946704 ~ 13957138 (-)
bmp2b bmp2 coding upstream 63141 13981265 ~ 13987401 (-)
pak5 pak5,LOC102790572 coding upstream 326317 14244441 ~ 14322141 (-)
LOC120547016 LOC103375044,LOC104947369,LOC101079388,LOC102209315 coding upstream 417515 14335639 ~ 14359390 (-)
G184162 NA non-coding downstream 69094 13842272 ~ 13842477 (-)
LOC120546199 NA non-coding downstream 512996 13339183 ~ 13398575 (-)
G184049 NA non-coding downstream 592641 13318488 ~ 13318930 (-)
G184026 NA non-coding downstream 661135 13249591 ~ 13250436 (-)
G183981 NA non-coding downstream 877074 13034252 ~ 13034497 (-)
G184204 plcb1 non-coding upstream 200898 14119022 ~ 14141806 (-)
G184208 NA non-coding upstream 269304 14187428 ~ 14231705 (-)
G184217 plcb4 non-coding upstream 304851 14222975 ~ 14225219 (-)
LOC120546499 NA non-coding upstream 320302 14238426 ~ 14243275 (-)
G184224 NA non-coding upstream 331090 14249214 ~ 14328936 (-)
mfsd2b mfsd2b other downstream 420428 13473683 ~ 13491143 (-)
fkbp1b fkbp1b other downstream 443506 13458602 ~ 13468065 (-)
runx2b runx2,LOC102312376 other downstream 607787 13255885 ~ 13303784 (-)
hmgn3 hmgn3,LOC104958971 other downstream 695671 13145464 ~ 13215900 (-)
LOC120547209 NA other downstream 903703 12960498 ~ 13007868 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other upstream 554077 14472201 ~ 14498370 (-)
naa30 naa30,LOC102795089,LOC104960600 other upstream 653256 14571380 ~ 14612946 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other upstream 739053 14657177 ~ 14667601 (-)
rps29 NA other upstream 1192116 15110240 ~ 15111479 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 1870702 15788826 ~ 15795638 (-)

Expression


Co-expression Network