LOC120546286 (gpr6,LOC104945012)


Basic Information

Item Value
gene id LOC120546286
gene name gpr6,LOC104945012
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19834485 ~ 19837398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781136.1
TGAGGTGACATTAGAAGGTGGTTGACTTACTCCACCTATTCAGTGTGAAACTGAGATACACCAGGCTTTCAAGGTATCAACATCTACagcttgagagagagagagagagactcgccgctctctatctctctttctgccGTGACGTCAGGCGGATTTAAAGCTCTCCTCGAGCGTCTCCGGTCGGTCCCCTCTGGTCcatcgcctcctcctcctcctcacattCACCTCCTCGCCGTGCTGAACACCGGCCAATGCTGCACACCACCCCTGTCCTGGGTGTCTGTCCCATGCGTGGGAAGCACAACAAAGTCAAGGGCTTTACTTGAGAGGGTCCAAAGGAGCGAGAAAAAAGGGGGCATTCCCTTTTACTTTGAATTGGTATACTTTTTCGGACGAGAGGCTCCGATTTCAGCGAAAATCTCCGCTCATACCGTTTTGTCACGGAGGCCAAAAAGACGACAGCTGCGAGATATGAACAAGTCGCTAGTGGTCAACGAGTCCTTTGCGGCCCCTGTGGCTGGAGAAGCTCTCCCATGGATGGAAGCTGATTCTCCAGAGCGCAACAGCAGCCTGGAGTTCTCCACTGCGCCGTTAGATTTCCCCATCAATCCGTGGGACATTATGCTCTGCATGTCAGGCACTGTCATCGCCTGTGAAAACGCCATAGTGGTAGCAATTATCTTCTACACACCGACACTAAGAACTCCTATGTTTGTGCTGATTGGGAGCCTGGCCACAGCTGACCTGCTGGCCGGCATGGGATTAATCCTGAACTTTGTGTTTCAGTATGTGATATCCTCTGAGACTATCAGTCTTATCACTGTAGGCTTCCTGGTGGCCTCCTTCACTGCGTCCATCAGTAGCCTCTTGGCCATAACAGTGGACCGTTACTTCTCCCTCTACAACGCCCTGACATACTTCTCAGAGAAGACGCTGCAGTATGTACACCTGATGCTACTGGGTACCTGGGGGGTGTCTCTGTTTTTGGGCTTGCTGCCAGTTCTCGGCTGGAACTGCCTGGACGATCCAGCCTCCTGCAGCATCGTTCGTCCTTTGACCCGGAGCAACGTCACAATCCTGGCCACATCCTTCTTTGTCATCTTCGTGCTCATGCTGACCCTCTACTTTAAGATTTGCAAGATCGTTTGCCACCACGCCCACCAGATCGCCCTCCAGCAGCACTTTTTTGCCACGTCAAATTATGTCGCAACTAAGAAGGGGGTCTCCACTTTGGCCATCATCTTGGGGACATTTGGCGCCAGCTGGCTGCCTTTCGCCATCTACTGCCTGGTTGGTGAGAAGGAGTATCCATCAGTGTACACCTATGCTACACTGCTGCCAGCCACCTACAACTCCATGATCAACCCCATCATCTACGCCTACAGAAACGCAGAGATCCAGCGCTCCATCTATGTGCTTCTCTGTGGCTGCTTTCAGACCAACAAGGCATACAGGTCCAGGTCACCAAGTGAAGTCTAAAACGGTGCTAGggctctttttttgtgtgtgagtgttagtTTGTGAGAAAAGACAGAGCAAAAAGACAAACCATCCTGTCATCATTGACAATCTGCTTACAATTGACAGTGAATGCTTTTTACGAACACAAAGAGAGTGTTAAGCTAGAAACGTGTCTCTCATGCATCCTGTATCTGCACTTTATTATGTCTCAACACAAGTTAGGATGAGGTTTTTGGAAATGCTGTGAACAAGAAAACTTCtgtgaaaaagacaaaacaaacctGCGAATGTACTTAAATGAGTAAAAGAATGGAAAATCTTGCACTTTAGTACGTGTTTTTTGAAATGCCAAAGCAGTATTATATAGCCCTCATTGTGTTTTAAACGTTTGAACTTGTGAGTACCGTGTGCcatttttctattttgtatAGTATTGCCTTTGATGTGCATTTTCTACAAGAAGGAATAAAGAAATGAAATCCA

Function

symbol description
gpr6 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: G-protein coupled receptor 6-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04313 GPR6; G protein-coupled receptor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781136.1 True 1944 mRNA 0.48 2 19834485 19837398

Neighbor

gene id symbol gene type direction distance location
fig4a fig4,LOC102794534 coding upstream 3642 19745177 ~ 19830843 (+)
si:dkey-119f1.1 smc6 coding upstream 103261 19712664 ~ 19731224 (+)
LOC120546417 NA coding upstream 131094 19699722 ~ 19703391 (+)
si:ch211-225h24.2 tdrp coding upstream 236378 19584702 ~ 19598107 (+)
lin9 lin9 coding upstream 421787 19403856 ~ 19412698 (+)
cdc40 cdc40,LOC103135076 coding downstream 82075 19919473 ~ 19944031 (+)
slc22a16 slc22a16 coding downstream 140466 19977864 ~ 19992886 (+)
LOC120546927 LOC104961664 coding downstream 779852 20617250 ~ 20622631 (+)
epm2a epm2a coding downstream 791443 20628841 ~ 20638714 (+)
LOC120547338 NA coding downstream 1041082 20878480 ~ 20881587 (+)
G185804 NA non-coding upstream 95195 19739040 ~ 19739290 (+)
G185802 NA non-coding upstream 96221 19737994 ~ 19738264 (+)
G185800 ak9 non-coding upstream 98429 19735840 ~ 19736056 (+)
G185799 NA non-coding upstream 98761 19735518 ~ 19735724 (+)
G185795 NA non-coding upstream 122653 19711527 ~ 19711832 (+)
G185827 NA non-coding downstream 12776 19850174 ~ 19851711 (+)
G185869 mettl24 non-coding downstream 107695 19945093 ~ 19980090 (+)
LOC120546509 NA non-coding downstream 113213 19950611 ~ 19973343 (+)
LOC120546242 NA non-coding downstream 424387 20261785 ~ 20359609 (+)
LOC120546929 NA non-coding downstream 789150 20626548 ~ 20628265 (+)
acp1 acp1 other upstream 186329 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 213702 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 292653 19429595 ~ 19541832 (+)
acbd3 acbd3,LOC102799892 other upstream 406996 19354616 ~ 19427489 (+)
kif25 LOC104961976,LOC100703631 other downstream 15245 19852643 ~ 19860217 (+)
gtf2h5 gtf2h5 other downstream 1333550 21170948 ~ 21172639 (+)
erh erh,LOC100699790,LOC101174968 other downstream 2107345 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 2148381 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 2443569 22280967 ~ 22301585 (+)

Expression


Co-expression Network