XLOC_004928 (LO018644.1)


Basic Information

Item Value
gene id XLOC_004928
gene name LO018644.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 40529226 ~ 40660790 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009676
gcTTAGCTCATTCGTTCAAGTTCCAAAAGGAATCATACGACCTTTTCACTCACACAACGACTCGCTAATTAACTGAATCGTTTAAAGCGGTTCTTCTGAACTTCCTCGTGGAGCAGAACGCAGAAACTTTGTGGACAAAAATTACAAAAGGAGCGCTGGATAAAGTAAATATTGACCAGCAATGCATTGAAAAAACACAATACGTTTGATGACAGCGATGAAGAAGTTATGAAGTTCAACACCTGCAAGCAACTTGACCACACAGAAGACTCGGAGCAAGACAGAACAGAGAGCGCTTAGATCACCGGCTCTCTGAAGACACCGGTACGAGCCAAGCTGAGATGTGCTACCACAGGAGGAGATATTTTGATTATTCTGAAAGCTTGACAGTTTCAGgTAAATGCCTGGAGTCAAAAGTCTGGCTAGagtctGTTACATCCCTTTCGAGCTTGTTGAGACTCAGGCAGGGCATGACTACATAATGGTTATGTCATTATGTAGTCATGGCCATATGACATTTAAAGTGTCTCTGCCTGTCAGCCAGTCTCTGAGTGTCTGGCAGCAAAACAAGgcagtaatgtgtatttatagagCAGTGGCCATGCGGAGCGCACAGGGCTGAATGGAGGCGTGTGTCCGATGTGATTGCTTGACCCTTGGTTGAAGGAAAGAGTTGACTGACATCTTCAGGCATTGACTATAAGAAGGCCCTTTACTTTTAGCGCAAATGGAGTTTCCTTTTTGAGCCACCAAGACAGTATGTAGTGGTCAGGATTTTTGTCTGTATGTGACTACTGCACATGGTGAGTTGCACTTGCTGTTTGTGGAACTTCCATTcagtaaaactaaaacaaataaatgaaatccaAATGTACTTTTTCTATTTGTATACAGAATGTACAGATAAAAATCAGACTTATTAGCCCAccg
>TCONS_00009678
gcTTAGCTCATTCGTTCAAGTTCCAAAAGGAATCATACGACCTTTTCACTCACACAACGACTCGCTAATTAACTGAATCGTTTAAAGCGGTTCTTCTGAACTTCCTCGTGGAGCAGAACGCAGAAACTTTGTGGACAAAAATTACAAAAGGAGCGCTGGATAAAGTAAATATTGACCAGCAATGCATTGAAAAAACACAATACGTTTGATGACAGCGATGAAGAAGTTATGAAGTTCAACACCTGCAAGCAACTTGACCACACAGAAGACTCGGAGCAAGACAGAACAGAGAGCGCTTAGATCACCGGCTCTCTGAAGACACCGGTACGAGCCAAGCTGAGATGTGCTACCACAGGAGGAGATATTTTGATTATTCTGAAAGCTTGACAGTTTCAGGTGGCTGGAAGATTCGCCCAATTGATTTGGGTTTTTCTCAGCAAGAACAAAATGAGAGGGAAGATTGCCAGGAAGTGTCCCGCTGTTACCATTCTGGCCAGTGGAGGGTGCTGTAagATATTAAATATTGGGGGAAATATGTTTGTATGAAGAGCGGCACAATGGTCAATTatggtgcctcacagcaagaaggtcactggtttgagtcccagctgggtcagttggcatttctgtgtggagtttgcatgctc
>TCONS_00009677
gcTTAGCTCATTCGTTCAAGTTCCAAAAGGAATCATACGACCTTTTCACTCACACAACGACTCGCTAATTAACTGAATCGTTTAAAGCGGTTCTTCTGAACTTCCTCGTGGAGCAGAACGCAGAAACTTTGTGGACAAAAATTACAAAAGGAGCGCTGGATAAAGTAAATATTGACCAGCAATGCATTGAAAAAACACAATACGTTTGATGACAGCGATGAAGAAGTTATGAAGTTCAACACCTGCAAGCAACTTGACCACACAGAAGACTCGGAGCAAGACAGAACAGAGAGCGCTTAGATCACCGGCTCTCTGAAGACACCGGTACGAGCCAAGCTGAGATGTGCTACCACAGGAGGAGATATTTTGATTATTCTGAAAGCTTGACAGTTTCAGgTAAATGCCTGGAGTCAAAAGTCTGGCTAGATATTAAATATTGGGGGAAATATGTTTGTATGAAGAGCGGCACAATGGTCAATTatggtgcctcacagcaagaaggtcactggtttgagtcccagctgggtcagttggcatttctgtgtggagtttgcatgctc
>TCONS_00011010
CTCGCTAATTAACTGAATCGTTTAAAGCGGTTCTTCTGAACTTCCTCGTGGAGCAGAACGCAGAAACTTTGTGGACAAAAATTACAAAAGGAGCGCTGGATAAAGTAAATATTGACCAGCAATGCATTGAAAAAACACAATACGTTTGATGACAGCGATGAAGAAGTTATGAAGTTCAACACCTGCAAGCAACTTGACCACACAGAAGACTCGGAGCAAGACAGAACAGAGAGCGCTTAGATCACCGGCTCTCTGAAGACACCGGTACGAGCCAAGCTGAGATGTGCTACCACAGGAGGAGATATTTTGATTATTCTGAAAGCTTGACAGTTTCAGACACTTTCGTCTAACTGACTTCGATAATGGATACAAAGAAATATTCACCACAAAGAGAAATGAAAAAGCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117267

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009676 False 930 lncRNA 0.43 4 40529226 40575142
TCONS_00009678 False 647 lncRNA 0.45 4 40529226 40660790
TCONS_00009677 False 560 lncRNA 0.44 4 40529226 40660790
TCONS_00011010 True 406 lncRNA 0.42 3 40529286 40564257

Neighbor

gene id symbol gene type direction distance location
XLOC_004926 CR847968.1 coding upstream 10946 40205995 ~ 40518280 (+)
XLOC_004927 LO018394.1 coding upstream 117544 40411566 ~ 40411682 (+)
XLOC_004925 LO017650.1 coding upstream 758839 39685485 ~ 39770387 (+)
XLOC_004924 FQ311878.1 coding upstream 1025548 39503564 ~ 39503678 (+)
XLOC_004923 BX294100.3 coding upstream 1098909 39430202 ~ 39430317 (+)
XLOC_004929 NA coding downstream 23976 40684766 ~ 41114078 (+)
XLOC_004930 NA coding downstream 496069 41156859 ~ 41243282 (+)
XLOC_004931 NA coding downstream 587970 41248760 ~ 41294163 (+)
XLOC_004932 si:ch211-27e6.1 coding downstream 688179 41348969 ~ 41369866 (+)
XLOC_004933 NA coding downstream 752722 41413512 ~ 41415285 (+)
XLOC_004922 NA non-coding upstream 1273853 39253189 ~ 39255373 (+)
XLOC_004935 FP236323.1 non-coding downstream 799728 41460518 ~ 41460634 (+)

Expression


Co-expression Network