ctsbb (ctsb,LOC104947341)


Basic Information

Item Value
gene id ctsbb
gene name ctsb,LOC104947341
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18977830 ~ 18981178 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781178.1
TCATAAGTTGCTGCTTGTAAAAAGGGCAGTAAGAAGTCAGAGGACTGGTGTTTAATTCAGTGAGAGAAAGGAATTGTCCAGAACGTCGTTTGTCACAACTACAGGATGCGTCCACTGGCTCTCTTTTGTGTACTTGTGACTGTCTCTGTCACCTGGGCGCGGCCTCACCTCCCTCATGCCTCATCCTCAGAGATGGTCGACCGTATTAACAAGGCCAACGCCACCTGGACGGCCGGGCAGAACTTCCATAACATTGATATCAGCTATGTGAAGGGACTGTGTGGGACTATACTGAATGGACCCAAGCTGCCAGAGGTGGTTCACAGTACTGAAGGCATAAAGCTTCCGGACAGCTTTGACGCACGCCAGCAGTGGCCCAAGTGTCCCACAATCCAACAGATCAGGGACCAGGGATCCTGTGGGTCCTGCTGGGCCTTTGGGGCAGCTGAGGCGATATCCGACAGGTTATGTATCCACAGCAGTGGTCAGATCTCTTTGGAGATCTCTGCTGAAGACCTACTGTCCTGCTGTGATGAATGTGGCATGGGCTGCTTTGGTGGTTTTCCCTCTGCTGCTTGGGAGTTCTGGGCAAAGAAAGGACTTGTGACAGGAGGCCTGTATAGCTCCAAAGTTGGCTGCCGACCCTACAGCATCGCTCCCTGTGAGCATCACGTGAATGGGACTCGTCCTCCGTGTCAGGGTGAAGGAGAGACTCCTAAGTGTGTGGAGCAGTGCATTGATGGATACTCACCGTCCTATCAGAAGGACAAACACTTTGgtaaacacacatacagcgtCCCGTCCAAACAGGAGCAGATCATGACCGAGCTGTACAAGAACGGGCCTGTGGAGGCAGCTTTCTCTGTATATGCAGATTTTCTGCTGTACAAGGCTGGTGTGTACCAGCACATGACAGGGGAGATGCTGGGAGGTCATGCTATCAAGATCCTCGGCTGGGGAGAGGAGAATGGGACGCCCTACTGGCTGGCTGCAAACTCCTGGAACAGTGATTGGGGAGATAAAGGTTTCTTCAAGATCAAACGTGGAAATGATGAGTGTGGTATTGAGTCGGAGGTGGTTGCAGGAATTCCACTCAACTAGATTAAATGAGTCCTGGctgcaaaaaaattgtcaaatcaagtcaatcaggaaatattaaaataaagaccTTATTTTCTAAAAGACTTGAGTATTGCATTTAAAGGCATTCACATATAGAGAGATTTCAGTTCATCATCAAGGAATAAATTGCACAACATGGTGAAACAAGAA

Function

symbol description
ctsb Enables collagen binding activity; cysteine-type endopeptidase activity; and proteoglycan binding activity. Involved in several processes, including cellular response to thyroid hormone stimulus; collagen catabolic process; and proteolysis involved in cellular protein catabolic process. Located in extracellular space; lysosome; and perinuclear region of cytoplasm. Colocalizes with collagen-containing extracellular matrix. Implicated in diabetes mellitus. Biomarker of several diseases, including autoimmune disease of the nervous system (multiple); carcinoma (multiple); glioblastoma; intracranial aneurysm; and type 2 diabetes mellitus.

NR:

description
cathepsin B precursor

GO: NA

KEGG:

id description
K01363 CTSB; cathepsin B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781178.1 True 1272 mRNA 0.49 10 18977830 18981178

Neighbor

gene id symbol gene type direction distance location
fdft1 fdft1 coding upstream 379 18966206 ~ 18977451 (+)
gata4 gata4,LOC102782453 coding upstream 19028 18948320 ~ 18958802 (+)
trnae-cuc_27 NA coding upstream 45443 18932316 ~ 18932387 (+)
LOC120546190 l3hypdh coding upstream 159387 18814609 ~ 18818443 (+)
LOC120546186 kcnh5,LOC103364987 coding upstream 164116 18798257 ~ 18813714 (+)
LOC120546316 LOC104947340,LOC103364984,LOC107377588,LOC106510778 coding downstream 999 18982177 ~ 18989774 (+)
prkg3 LOC104947339,LOC103364985,LOC100708987,LOC101479945 coding downstream 9768 18990946 ~ 19003030 (+)
si:ch211-203k16.3 LOC102290548,LOC102780528,LOC100708179,LOC101478729,LOC102192128,LOC103369909 coding downstream 89491 19070669 ~ 19076482 (+)
moxd1l NA coding downstream 115881 19097059 ~ 19102420 (+)
rps6kc1 rps6kc1 coding downstream 121405 19102583 ~ 19126659 (+)
G185495 daam1,LOC108240128 non-coding upstream 156684 18819084 ~ 18821146 (+)
G185471 NA non-coding upstream 272596 18703965 ~ 18705234 (+)
LOC120546607 NA non-coding upstream 287797 18666640 ~ 18690033 (+)
G185415 LOC106525279 non-coding upstream 332676 18643419 ~ 18645154 (+)
G185414 NA non-coding upstream 337449 18636374 ~ 18640381 (+)
G185589 NA non-coding downstream 33548 19014726 ~ 19019533 (+)
G185590 NA non-coding downstream 41518 19022696 ~ 19023030 (+)
G185591 kcnk2 non-coding downstream 43086 19024264 ~ 19024578 (+)
G185592 kcnk2 non-coding downstream 62046 19043224 ~ 19043548 (+)
G185593 NA non-coding downstream 64236 19045414 ~ 19046107 (+)
LOC120547227 LOC104932566,LOC103364615 other upstream 265836 18705856 ~ 18711994 (+)
ylpm1 ylpm1 other upstream 342778 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 837570 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 922904 18020956 ~ 18054926 (+)
G185237 NA other upstream 1060582 17916853 ~ 17917248 (+)
LOC120546624 prox1 other downstream 222976 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 373438 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 386542 19367720 ~ 19389223 (+)
nhsl1b nhsl1,LOC101470763 other downstream 448417 19429595 ~ 19541832 (+)
zgc:193593 NA other downstream 591395 19572573 ~ 19620783 (+)

Expression


Co-expression Network