laptm4a (laptm4a)


Basic Information

Item Value
gene id laptm4a
gene name laptm4a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22762357 ~ 22774632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781203.1
GTCGCGCTGCAGGTCGTCAGGGGAAGTGGTGGGCGTTCCTCCATGTTTGTTAGCTGGCTGTTGATGCTGCGAAGATTATTTTCCGCCACGACAAGCTTTCCCGATGTTTCTTCCTACGCTTGTGGAGGACATGCATCATTTTAAACCAAGTCGAGACAGACTGTACACCACCAGGTGTTGTGGATGTTGCCATGTCCGGACGGGGACCATCATCCTAGGAACATGGTACATGGTAGTCAATCTGTTGATGGGCATCCTGCTGACTGTAGCTGTGACCCACCCAGAGAACGTGCCCACTATTGACTTGCAGTATGAGGTCATTGACCATTACTTTGCCTCTGACAGGATGTCTGAGAATGCCTGTGTTGGATTTGCCATCTCTCTGCTGATGCTCACTATCAGTGCCATGATGGTGTATGGAGCCATTACTCATCGTGACGGGTGGCTCATCCCGTTTTTCTGCTACCAGCTGTTTGACTTTGCTCTGAGCTGCCTGGTGGCCATCAGTTCTCTCACCTACCTACCCAGGATCAAGGACTACCTGGACCAGCTGCCGGATTTCCCGTACAAGGACAACCTTCTCTCTCTGGACTccagctgcctgctgctcttTGTGCTGGTCTTCTTCGCCTTCCTCATCATCCTCAagTCTTACCTGATCAACTGTGTGTGGAACTGCTACAAGTACATCAACAACAGGAACATGCCAGAGATTGCTGTCTACCCGGCCTTTGAGACCCCTCCCCAGTACATCCTGCCCACTTATGAGATGGCAATGAAGATGCCAGAGAAGGAGCCACCTCCTCCTTACATGCCCGCTTAAGCACCAGCCCTGTTgccaaaacacacatgcacacacactcacacaccaccATATGCATTCCTACCTTCCCTCACTAAACCTTTCTGAACACCCCTGACCTACTTGTGTATGTGTAAGGCCACtgataatgttttatttatccCTATCCTCTGTATTTCTACAGAGCATCTGTAAAGCATCATGGAGGTGTGAGAGGAGAAAGGTGGGAAAGACTGAAATCTgtgtgaaatgaatgaatgaatgaatgaatgtgatgtttgaAAAGCAACGGAAGCTTCCAGCCCGCCCTCCCACCCCTTCTGGCCTTTTTTAAGTCTTAGCAAAAGGGATACATGTGAAAATGTAATTGCTTGAAATGCTATCATCAATCCAGCACCATCCTAGCTATAGATTGTTATGACGTGTAAAAACAAACCTACTATTACGACAATCCACTTATTATAGCTCTTATTGTTGAATTGTGTTACTTTTCCCCCTACTTATTAAGATCTAGACTATTCCATCTCAGTCATGAATGGATTCTGTAGCACTTTTCagtctgttatttatttagctttGCTGTGGTTCAGTTCACCGCCACCCTTGACATTTTCATCACTCTCTGCTGCCCTGGTGTGTTAGCAAAGCTAGTGAATTGTTTCCCAGCTGAGACTGAGAGACAGATGATGGATcattttctctgcttctctctcaCCTCACATCTGGAGCAAACTGCTAGTCTTGTGAACATTTGTAGTTGCATGCTTATCAACATCCTCCCCCATTACTTTACTGGTAATATGATTTTTATCCTAGTGGAAATACTTTTGACTTCAATAAACGTTTCAGAACATTTTA

Function

symbol description
laptm4a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane. Is expressed in adaxial cell; hypaxial myotome region; myotome; pectoral fin musculature; and somite. Orthologous to human LAPTM4A (lysosomal protein transmembrane 4 alpha).

NR:

description
PREDICTED: lysosomal-associated transmembrane protein 4A

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12387 LAPTM; lysosomal-associated transmembrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781203.1 True 1660 mRNA 0.46 7 22762357 22774632

Neighbor

gene id symbol gene type direction distance location
LOC120546327 NA coding upstream 799 22756018 ~ 22761558 (+)
pum2 pum2,LOC102798245 coding upstream 7213 22720115 ~ 22755144 (+)
LOC120546322 apob coding upstream 46525 22700059 ~ 22715832 (+)
LOC120546321 NA coding upstream 75007 22671825 ~ 22687350 (+)
apobb.1 NA coding upstream 95614 22650242 ~ 22666743 (+)
matn3a matn3,LOC103362679,LOC101066369 coding downstream 1005 22775637 ~ 22781793 (+)
ttc32 ttc32,LOC102775905 coding downstream 12460 22787092 ~ 22790555 (+)
zpax1 NA coding downstream 16088 22790720 ~ 22795363 (+)
ttbk2b LOC103372651,LOC104945868 coding downstream 73466 22848098 ~ 22856575 (+)
znf106b NA coding downstream 86176 22860808 ~ 22875214 (+)
G186578 rhob,LOC104947257 non-coding upstream 42464 22716970 ~ 22719893 (+)
G186506 NA non-coding upstream 224641 22535659 ~ 22537716 (+)
G186452 NA non-coding upstream 467660 22294442 ~ 22294697 (+)
LOC120547080 NA non-coding upstream 928575 21832948 ~ 21833782 (+)
LOC120546760 NA non-coding upstream 1015803 21745581 ~ 21746554 (+)
G186622 NA non-coding downstream 25103 22799735 ~ 22800058 (+)
G186641 NA non-coding downstream 72240 22846872 ~ 22847674 (+)
G186697 NA non-coding downstream 242325 23016957 ~ 23018800 (+)
G186725 NA non-coding downstream 368798 23143430 ~ 23143648 (+)
G186726 NA non-coding downstream 369327 23143959 ~ 23144290 (+)
lin28b lin28b other upstream 460772 22280967 ~ 22301585 (+)
G186394 mycn,LOC108233328 other upstream 696768 21985779 ~ 22065589 (+)
erh erh,LOC100699790,LOC101174968 other upstream 815357 21944743 ~ 21947000 (+)
gtf2h5 gtf2h5 other upstream 1589718 21170948 ~ 21172639 (+)
kif25 LOC104961976,LOC100703631 other upstream 2902140 19852643 ~ 19860217 (+)
kcns3b kcns3,LOC103372653 other downstream 33247 22807879 ~ 22810520 (+)
si:ch211-22i13.2 NA other downstream 187401 22962033 ~ 22966010 (+)
dtl dtl other downstream 313188 23087820 ~ 23095505 (+)
ppp2r5a ppp2r5a other downstream 321280 23095912 ~ 23142640 (+)
rsph3 rsph3 other downstream 418006 23192638 ~ 23196996 (+)

Expression


Co-expression Network