si:dkey-119f1.1 (smc6)


Basic Information

Item Value
gene id si:dkey-119f1.1
gene name smc6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19712664 ~ 19731224 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781214.1
AAAGCAGTATCTGTGCCgtGTGACCAAGATGTCTAAAAGGAAGAGCAGCCCTGTCAGTGACAACACCAACAAACGGGTCAAACCTGCGGTGGAGGAAGACGTGGAAGATGAAAATGTTTCTAATAGTGACCAGGAAGATCCTCTACCGAATAGACAGGTGCCATGTGCTGATGAGGTGGTGAGTGCAGGAATTGTGGAGAGCATCACACTGAAGAACTTCATGTGCCACTCTCACCTTGGCCCCTTCACTTTTGGTTCCAATGTCAACTTTGTTGTTGGCAACAATGGAAGTGGAAAGAGTGCCGTTCTGACAGCTCTCATAGTTGCTTTAGGTGGGAATGCACATGCCACCAACAGAGGATTATCACTCAAGGGATTTGTCAAGGAAGGAGAAAGCTCAGCTGATGTATCAATTACCCTGCGTAACAAAGGAAAGGATGCTTACAAACCTGAGGTGTATGGTCCAGCCATCATAGTAGACCTGAGAATAACACGTGAGGGGTTGAGAACCTATAAACTGAGGAGCAAATCAGGTCAACTTGTGTCAACCAAAAAGGAAGAGCTGTTGTCCATCCTggacaattttaacatacaGGTCAACAATCCTGTGTCAGTTCTGACTCAAGAGATGAGCAAATACTTCCTTCACTCCAAAGGAGAGGGGGACAAATACAAgTTTTTTATGAAAGCTACCCAACTGGAGCAGATGAGAGAGGACTTTACCTacatcaaaaccaccaaacatatCACGGAGGATAAAGTTGGGCAACATAGTGAATGCTTGAAAGACTTGAAGCGGAAGTACCTGGAGAAAGAAGACCGTTATAAGAACCTGGCGTCATTTGATGAAATGCAAACCAAACTGGAGGAGTTGCAGAAGCAAATGGCTTGGGCTTTGGTGATTGAGATGGAGAAGGAGTTGGAGCCAATGAAGGAGAAGCTGCAGTCAGACAGACGTTCTACAGAGAAATATGATGAGAAGGTGGATGAATGGAAGAATAAGCTCGAGGAGGCTGAGAGGAAATACAGGCAGATCCAGGAACAGTTGGAGGGGATCACACAGCAAGTCCAGGAGCTCCAGCCCAAATGTGCTGAGCTCAAAACCGGCCAGAGACAAAATACCCTTCTCAAGTCTAGCGAGGTCACTGTTCACAGATGCAAGGCTAACCTGAGGGACCTGGAAAAGGACAAGGTTCAGCTGTCTTCAAGGATAAATGATCTCAAGCTGAGCATCAGTCAGACAACTGGAGTGGAGAGCCAGGCCAAGACGGAGCGTATGGAGCAGATACAGGCTGAGCTGGAAAACATGAGACAAAAGAGTGCCACTCTTGGCCAGCAGATTGACCAGTATGAGCATGCCTGCAGCCGTGCCAAGGAAGAACAAGGAAAGATGAGGAGAGAGCAGGAAGTGCTTCAGAGGTCCATTGATGCCAACAGAAGGAACTTGCAGACTATGGAGAGCAGTCGGTCTAATCGCCTGCGGCGTTTTGGAGAGCACATGCCCGCACTCCTCAACGCCATCCAGGAAGCTCATAGAAGGGGCCAGCTCAAGCATAAACCTCGAGGACCTCTGGGTCACCTTATTAGCCTGAAGGACCCAGAGCTGGCTCTGTCCGTAGAAGTATGTCTCAAAGGCCAGCTACAGGCCTTCACTTGTGATAACCACGAGGATGAGAGGGTGCTGCAGGGCCTCATGGCCAAAGTGTTCCCAACTGGCCGTAGACCTACCATCATCACCAGTCAGTTTCTCCCAAGTGTCCACGATACAAGATCGAGGGGTGTGAATCACCCTGAATACCCGTCCGTGCTTCAAGCTCTAGAAATTGAGGACCCAGTTGTGGCCAACTGCCTGATTGATCAGAGGGGTATAGAGAGCATTCTACTCATTAAGAATCGAACAGAGGCTCGAAGACTGATGCAAGGGAAAAACCCTCCTCGGAACTGTAACCAGGCCTTTTCCAAGGAGGGAGATCAGATCTTTAATAACCGTAGTTACACCGCTGAGCAGACCAGAGCCAACTATCTCTCGGGAGATGTTGAGGAGGAGATCAGGCACTTGCAGAGGGAGATGGAGAACCAGAAAGCTCAGGCAAATCGCTTCCAGTTACAGATGAAAAAGTTAGATGAAGACGTCAAACAGAACGATGGGCTGCTGAGAAGAACCCACATAGAGCAGAGGACTACCAAAGACAAGATCACAAAGCTAGAGCTGGAGCTGACAGACCTACAAAATGTGGAAGAGTCTCAGTCAGAGGACCTCAGTCCCCTGGAGGAAGATCTTCAGGAGATTGTTACTAAGATCTCGTCCAAGCGTGCTGAGTACGAGGAGGCACGAACTAAGACGGCTGAGCTGAAGGCCTCCTATGAGAAGGCAGAGCAGGAGTACAAGCAGCACAAAGAGCAGATAAACACGGTCGCTGAGGATGCTGACCCAATCAAGGAGGAGCTGAGTAAGGCTGATCAGGAGGTGATGAAGTGCAAGCATCACAAGAAACACTATGAGGAGAAACGCAGTGCCCATCTCCGCAACATACAGACACTGCAAGTCAATCTGGAAAGCAAGGAGCAGGAGCTTCAGATTTCTGTGGCCAAGGCCACAGAAATCTGTCCAGAGCGTCTGGAAGTACGACGGACAGCCAGGAGTCTGGACAGTGAGATCAACCGGCTCAAGGTTAAGATCACTACCCAGCAGGAACAACAGGGGGACCGTGAGGAGGTTGTGAGGCAGTATAACGAGGCTCTGGAGAACTACAAGAACATGGCACAGCAAATGAAGAACCTCACCAGCTTCATCAAAAGTCTCAGTAATGTTATGAACGACAGACTCCAGGTTTACGCTGAGCTCAAGAAGTTACTCTCTGCCCGCTGTAAATACTACTTTGATAGCATGTTGGCCCAGAGACGCTACACTGGAAGTATGACCTTTGACCACAAGAATGAAACCCTCTCCATCTCAGTGCAGCCAGGCCAAGGAAACAAGGCTGACTTGAGTGACATGCGCTCTTTGTCCGGAGGCGAGCGCTCCTTCTCCACTGTTTgctttgttctctctctttgGGCCATCACAGAGGCGCCTTTCCGCTGTCTTGACGAATTTGATGTATACATGGACATGGTGAATAGGAGGATATCAATGGACATGATGCTGAAGGTGGCTGCCGGTCAGCGCTTCAGACAGTTCATCTTCCTCACCCCACAGAGCATGAGCTCTCTTCCAGAGAGTAAAAACATCAGCATCCTCCGTCTCAAAGATCCAGACCGTGGCAACAACCCAGAAAGAAGTCAAGATGAGGACCAGTAGTATTGCTGCTGGTAATTTAACATCAAATAAGTTGATGAGACCAGTAGCAGGTGCCATAACCTCCATCGATTATGTTTAAGAAGGGTTCAAGAGTGGTTCGGTTTTTAGTTCCGTCAGTGATCgaaatacaatttttttaaagttctgtCTAGTAGGCAGTGtgttaaatgttttgttctACAACGCTGAATGCAAGTACCAACAAAATGTTGTATGCACTGATGCATCGAGGGTACTGCAAAGATGGTGAAGTATTTGTATATCCACTGCTGAAATAACTGTTAAATGGCTTGACAACTGGCACGTTGAAGGAGATGATGTCATTGTaagaatttttttaatattcattaaACCAAGTTCAGATACAAA

Function

symbol description
smc6 Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus and site of double-strand break. Orthologous to human SMC6 (structural maintenance of chromosomes 6).

NR:

description
structural maintenance of chromosomes protein 6 isoform X1

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0007155 cell adhesion biological_process
GO:0005604 basement membrane cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
K22804 SMC6; structural maintenance of chromosomes protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781214.1 True 3670 mRNA 0.48 28 19712664 19731224

Neighbor

gene id symbol gene type direction distance location
LOC120546417 NA coding upstream 9273 19699722 ~ 19703391 (+)
si:ch211-225h24.2 tdrp coding upstream 114557 19584702 ~ 19598107 (+)
lin9 lin9 coding upstream 299966 19403856 ~ 19412698 (+)
parp1 parp1,LOC102777090 coding upstream 309465 19391005 ~ 19403199 (+)
LOC120546239 NA coding upstream 379048 19328007 ~ 19333616 (+)
fig4a fig4,LOC102794534 coding downstream 13953 19745177 ~ 19830843 (+)
LOC120546286 gpr6,LOC104945012 coding downstream 103261 19834485 ~ 19837398 (+)
cdc40 cdc40,LOC103135076 coding downstream 188249 19919473 ~ 19944031 (+)
slc22a16 slc22a16 coding downstream 246640 19977864 ~ 19992886 (+)
LOC120546927 LOC104961664 coding downstream 886026 20617250 ~ 20622631 (+)
G185795 NA non-coding upstream 832 19711527 ~ 19711832 (+)
G185794 NA non-coding upstream 3152 19709214 ~ 19709512 (+)
G185793 NA non-coding upstream 3734 19708331 ~ 19708930 (+)
G185716 tmem18 non-coding upstream 19608 19692136 ~ 19693056 (+)
G185711 NA non-coding upstream 60089 19652237 ~ 19652575 (+)
G185799 NA non-coding downstream 4294 19735518 ~ 19735724 (+)
G185800 ak9 non-coding downstream 4616 19735840 ~ 19736056 (+)
G185802 NA non-coding downstream 6770 19737994 ~ 19738264 (+)
G185804 NA non-coding downstream 7816 19739040 ~ 19739290 (+)
G185827 NA non-coding downstream 118950 19850174 ~ 19851711 (+)
acp1 acp1 other upstream 64508 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 91881 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 170832 19429595 ~ 19541832 (+)
acbd3 acbd3,LOC102799892 other upstream 285175 19354616 ~ 19427489 (+)
kif25 LOC104961976,LOC100703631 other downstream 121419 19852643 ~ 19860217 (+)
gtf2h5 gtf2h5 other downstream 1439724 21170948 ~ 21172639 (+)
erh erh,LOC100699790,LOC101174968 other downstream 2213519 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 2254555 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 2549743 22280967 ~ 22301585 (+)

Expression


Co-expression Network