fig4a (fig4,LOC102794534)


Basic Information

Item Value
gene id fig4a
gene name fig4,LOC102794534
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19745177 ~ 19830843 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781219.1
GTGAGATCTTTCATGACAGTCACCTGACTAAAACAAAGTCATGTTGCAATTAGCTAGTGCTAGCCGTAAATACTTGTGCAAGCTACATACacaattaatgaattaaaaacgTTCAAATAGCTAAGTTATTTAGACTACCAGAGGAGATGCATTATTGCGTATTATTCTATGTGGGGATGATTTGTGGCTaacccagctagctagcaaatgCTCTTCAGTTGTCTCTTCTGGATTGTTTGGAGAATACAGGGATAAAAATGCCTCAGTCAGCGGCTATCATCAGTGGGATCCAGAGGATGGTTTTGTATGAAACCAGAGCCAGGTATTTTTTGGTGGGGACCAATCAGTCAGAGACGAAACACAGAGTCTTGAAGATTGACCGCACCGAACCCAAGGACCTGGTCATAATTGACGATAAGCATGTGTACAGCCAGCAAGAGGTTCGGGAGTTGTTGGGTCGCCTGGACCTGGGCAACCGGACCAAGATTGGCCAAAAGGGTTCCTCGGGCCTGTCCAGGGCTGTTTCCGCCTTTGGCATTGTGGGGTTTGTACGTTTCCTCGAGGGGTACTACATTGTGTTGATCACCAAGCGCAGAAAGATGGCTGACATCGGTGGCCACTCCATCTACAAAATTGAAGACACCAGCATGATTTACATCCCCAATGACTCGGTCAGGGTTACACACCCTGATGAAGCAAGATATGTGCGGATCTTTCAGAACGTGGACCTATCCAGCAACTTCTACTTCAGCTACAGCTATGACCTGAGCCATTCGCTGCAGTACAACCTGACTTTGCTGCAGAGACCTTATGAACTGTGGTCTTCACCAACTTCCCCTGCTGAGGAAGAAGTTAACAAACAGAGCAAGCAGGACAGCTTCGACATCTTTGAAGATGAGGGTCTGCCTACGCAGGTGGTTTACGGCCTCCAGAGCGAGCCGTACTACAAGTACGTGTGGAACGGGAAGCTGCTGGAACGAGTCAAGGACATAGTGCATCATGACTGGCTCATGTATATAATCCACGGCTTTTGTGGCCAGTCCAAGCTGCTGATCTACGGCCGACCGGTCCACATCACCCTTTTTGCCAGGCGCTCCAGCAAATTTGCCGGGACCCGCTTCCTCAAAAGAGGAGCCAACTGCGAGGGGGATGTGGCTAATGAGGTTGAGACAGAGCAGATCGTCCATGATGCCTCAGTTATGTCTTTCGCAGCAGGAAGTTACTCCTCATACGTCCAGGTGCGAGGTTCAGTCCCGCTCTACTGGTCCCAGGACATTTCCACCATGATGCCAAAACCCCCAATACGATTGGACCAAGCTGACCCATACGCCCACGTAGCTGCCCTCCATTTTGACCAGATGCTGCAGCGGTTTGGCTCTCCTATCATCATCCTCAACCTGGtcaagAAACGGGAAAAGAGGAAACATGAGAAGATTCTGAGTGAAGAGCTTTACCCAGCTGTGATCAACCTAAATCAGTTCCTCCCTCCAGACAACTGCATCGACTACATCGCCTGGGACATGGCCCGCTACACAAAGAGtAAGTTGTGCAACGTACTGGACCGTCTAAGCATGATAGCAGAGAACGTGGTTAAGCGAACCGGTTTCTTCATTAATCGTTCCGACTTCTACTGTCACACCATCAGACCAGATGACAGGTGGGGAGATTTAGGTGGACACATCACAGCCAGTGGACGAGTGCAGACTGGTGTATTGAGGACCAACTGTGTGGACTGTCTGGATCGGACCAACACAGCCCAGTTCATGGTGGGGAAGTGTGCGCTGGCCTATCAGCTCTATGCACTGGGAATGATTGACAAGCCCAAACTTCAGTTTGATACAGACTGTGTGAGGTTGTTTGAGGAGCTGTACGAGGACCATGGAGACACTTTGTCGCTGCAGTACGGCGGCTCCCAGCTGGTCCACAGGGTCAAGACCTACCGCAAGATCGCTCCCTGGACACAACACTCCAAAGACATCATGCAGACGCTGTCGCGCTACTACAGCAATGCTTTCTCAGATGCTGACAGACAGGATGCCATCAACCTGTTTCTCCAAGTCTACCAGCCATCGGAGTCCAAGCCACACCTGTGGGAGCTGCCCACTGACTTCTACCTGCATCAGAAGAACagcatgaccctcccccaagACAGACGCAGCTACACACTGTGGTGGTCACCAGGAATCTTATCTTACCTTCCTCTGGCCTATGATGAAGTCCCGTGTGAGGACAGCATGAAAAAGGTCAAAGTGAAGAGAGTGAACCGCTTTGAGGAGAGTATTGACATCTATACAGAATTCTTCAAACCTTATGAACTTACCGCCTTTGATGACACATTCTGCATCGCCATGACCAACTCTGCAagGGAATTCATGCCCAAGACCATTGGAGTGGATCCAAGCCCATTCACAGTTCGCAAGCCAGAGGAAACAGGAAAATCAGTGCTAGGCAACAAGAGCAGTAAGGAGGAGACCCTGCTACAGAGGAAGACTGCAGCCAGCGCCCCTCCTCCCCCGAGTGAGGAGGCCATTAGCAGCACATCGGAGGACGACTCCGAGGAGGACCGCGATGACGACGGATCCGTCTCCCAGCGCTCTACCCCGATCAAACTGCTAACAGAGTCTGGCGAAAGCAATCGCATACAGGAGgagatccagcagcagtcagttAAGGAGCCCTATGGACTCAATCTGTCTGAGTTTCCTGCTGAGAAAGACCTGCACATTTATGAAAGGTTTGTACATCTGGGCGAGAGCCAGCACAGGGTGGAAAGAACCGAACACATAAACCTGGCAAACATCATCTGCTTAGAGCCCGTGTCCTGCTTCCCAGAGGACAGCATCTATGGCGTTTCCCCCCCGCAGGTCGACAGAGAAAGCCGCGAGGAGTTTGAGAGCCATGTGGTGACGGGTCAGGGTCAGGTGAGGGTGCTGTGCAGGGACGACATGTTGATGTACAGGGAGTACGTCAAGAACAGATACATGTGAGACACAGACATCAAGAACTGGACCTCTGTTACCAATGTGCAAATCCAGATTATAAGATCAAATGCTGGGAGTATACTGTCCATAATGTTGCATGTACAACCCATGTGTCCTGTATTTGGACTCAACTATGCaggttgatttatttttattttttaactaagtcgtgtgtgttttacagtaatAGCTTCAAATGTTATTCAGTTAtgtcagttttgtttttattcattcagACTTGCCTCAACAGGCTACCTATATGgtgctttttatttgttctgttttttttccatttaaatTTAGATTGAAActcttttaattaaatttatttaactaaatgtttgttttgaacGTGTAAATTGATATAAATTTTgactcttaaaggtcccatattatgctaattttcaggttcatacgtatgccggggaatgactgtaacagcacAGTAGCGGCACTTTCCACCTACATATAGTATattatagttgtgacatcacaatcgtacggaagtcctgacggctcgtttataggcacagtttctgaatatgggctgtgtgcatttctctatggattgagcattttgatactttcacagtatttatatagcacctcgacctgctttataatttttacaatatgggatcTTTAAGTATTTTTGAATCTTAAAAGTTATAAACAATatcattatataatataattaatatgatgGCAAGCCCAGAGATTATGATAACTATGACTTATGATGTTCTTTAAATTCCACTTCAGATGTGCTTTGCGTTTTgatctttgtttttaatttattctGTTTAACCATTGTGCCATGACGGGGATATACATTGTTTTTCCTAAATTGCTCTCACAAAAACTATTTGAAACAATTGGCTTGCATAACTTAAGtcatgtactgtaaatgtatatCCAGGTTGTTTTCCTTTACACTCACATCACTGATACTTTGATATTGTGGGTTTTATCAAACCTCATTCTTAGTTTACAAAGCTGCACACCGATTTTGTTTTGTctaaatgcatttatttaatGTCATCTTATTATGACCGGTAGTTCTAAATTAAACACGTATTTACAGTATAAACATGATGTGACATTTGATTGATTCTACACTGTTCTTTTCCCTCTTTGCGCCTCTTCATATATTTCTGTGCTCTGTTGTTCTTCAGAAAAAATTATTAATACTTTCATGCAGCTTCTGTAACGGTTCTTCATCCCTCCTACTCTCTACTATTGTCtgtcacatttcttttttatgtattttacttAAAAGAGTCTCCCACCTCTTAA
>XM_039781220.1
GTGAGATCTTTCATGACAGTCACCTGACTAAAACAAAGTCATGTTGCAATTAGCTAGTGCTAGCCGTAAATACTTGTGCAAGCTACATACacaattaatgaattaaaaacgTTCAAATAGCTAAGTTATTTAGACTACCAGAGGAGATGCATTATTGCGTATTATTCTATGTGGGGATGATTTGTGGCTaacccagctagctagcaaatgCTCTTCAGTTGTCTCTTCTGGATTGTTTGGAGAATACAGGGATAAAAATGCCTCAGTCAGCGGCTATCATCAGTGGGATCCAGAGGATGGTTTTGTATGAAACCAGAGCCAGGTATTTTTTGGTGGGGACCAATCAGTCAGAGACGAAACACAGAGTCTTGAAGATTGACCGCACCGAACCCAAGGACCTGGTCATAATTGACGATAAGCATGTGTACAGCCAGCAAGAGGTTCGGGAGTTGTTGGGTCGCCTGGACCTGGGCAACCGGACCAAGATTGGCCAAAAGGGTTCCTCGGGCCTGTCCAGGGCTGTTTCCGCCTTTGGCATTGTGGGGTTTGTACGTTTCCTCGAGGGGTACTACATTGTGTTGATCACCAAGCGCAGAAAGATGGCTGACATCGGTGGCCACTCCATCTACAAAATTGAAGACACCAGCATGATTTACATCCCCAATGACTCGGTCAGGGTTACACACCCTGATGAAGCAAGATATGTGCGGATCTTTCAGAACGTGGACCTATCCAGCAACTTCTACTTCAGCTACAGCTATGACCTGAGCCATTCGCTGCAGTACAACCTGACTTTGCTGCAGAGACCTTATGAACTGTGGTCTTCACCAACTTCCCCTGCTGAGGAAGAAGTTAACAAACAGAGCAAGCAGGACAGCTTCGACATCTTTGAAGATGAGGGTCTGCCTACGCAGGTGGTTTACGGCCTCCAGAGCGAGCCGTACTACAAGTACGTGTGGAACGGGAAGCTGCTGGAACGAGTCAAGGACATAGTGCATCATGACTGGCTCATGTATATAATCCACGGCTTTTGTGGCCAGTCCAAGCTGCTGATCTACGGCCGACCGGTCCACATCACCCTTTTTGCCAGGCGCTCCAGCAAATTTGCCGGGACCCGCTTCCTCAAAAGAGGAGCCAACTGCGAGGGGGATGTGGCTAATGAGGTTGAGACAGAGCAGATCGTCCATGATGCCTCAGTTATGTCTTTCGCAGCAGGAAGTTACTCCTCATACGTCCAGGTGCGAGGTTCAGTCCCGCTCTACTGGTCCCAGGACATTTCCACCATGATGCCAAAACCCCCAATACGATTGGACCAAGCTGACCCATACGCCCACGTAGCTGCCCTCCATTTTGACCAGATGCTGCAGCGGTTTGGCTCTCCTATCATCATCCTCAACCTGGtcaagAAACGGGAAAAGAGGAAACATGAGAAGATTCTGAGTGAAGAGCTTTACCCAGCTGTGATCAACCTAAATCAGTTCCTCCCTCCAGACAACTGCATCGACTACATCGCCTGGGACATGGCCCGCTACACAAAGAGtAAGTTGTGCAACGTACTGGACCGTCTAAGCATGATAGCAGAGAACGTGGTTAAGCGAACCGGTTTCTTCATTAATCGTTCCGACTTCTACTGTCACACCATCAGACCAGATGACAGGTGGGGAGATTTAGGTGGACACATCACAGCCAGTGGACGAGTGCAGACTGGTGTATTGAGGACCAACTGTGTGGACTGTCTGGATCGGACCAACACAGCCCAGTTCATGGTGGGGAAGTGTGCGCTGGCCTATCAGCTCTATGCACTGGGAATGATTGACAAGCCCAAACTTCAGTTTGATACAGACTGTGTGAGGTTGTTTGAGGAGCTGTACGAGGACCATGGAGACACTTTGTCGCTGCAGTACGGCGGCTCCCAGCTGGTCCACAGGGTCAAGACCTACCGCAAGATCGCTCCCTGGACACAACACTCCAAAGACATCATGCAGACGCTGTCGCGCTACTACAGCAATGCTTTCTCAGATGCTGACAGACAGGATGCCATCAACCTGTTTCTCCAAGTCTACCAGCCATCGGAGTCCAAGCCACACCTGTGGGAGCTGCCCACTGACTTCTACCTGCATCAGAAGAACagcatgaccctcccccaagACAGACGCAGCTACACACTGTGGTGGTCACCAGGAATCTTATCTTACCTTCCTCTGGCCTATGATGAAGTCCCGTGTGAGGACAGCATGAAAAAGGTCAAAGTGAAGAGAGTGAACCGCTTTGAGGAGAGTATTGACATCTATACAGAATTCTTCAAACCTTATGAACTTACCGCCTTTGATGACACATTCTGCATCGCCATGACCAACTCTGCAagGGAATTCATGCCCAAGACCATTGGAGTGGATCCAAGCCCATTCACAGTTCGCAAGCCAGAGGAAACAGGAAAATCAGTGCTAGGCAACAAGAGCAGTAAGGAGGAGACCCTGCTACAGAGGAAGACTGCAGCCAGCGCCCCTCCTCCCCCGAGTGAGGAGGCCATTAGCAGCACATCGGAGGACGACTCCGAGGAGGACCGCGATGACGACGGATCCGTCTCCCAGCGCTCTACCCCGATCAAACTGCTAACAGAGTCTGGCGAAAGCAATCGCATACAGGAGACCAAGAAATGTCGACTACCACTAACTCCaaagccaaagaaaagaaagacaagcCGCTGAGGCCGAGGCTAGCTA

Function

symbol description
fig4 Predicted to enable phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity. Predicted to be involved in phosphatidylinositol biosynthetic process. Predicted to act upstream of or within several processes, including negative regulation of myelination; nervous system development; and phosphatidylinositol metabolic process. Located in endosome membrane and lipid droplet. Implicated in Charcot-Marie-Tooth disease type 4J; Yunis-Varon syndrome; amyotrophic lateral sclerosis type 11; and bilateral parasagittal parieto-occipital polymicrogyria.

NR:

description
polyphosphoinositide phosphatase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042578 phosphoric ester hydrolase activity molecular_function

KEGG:

id description
K22913 FIG4; phosphatidylinositol 3,5-bisphosphate 5-phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781219.1 True 4277 mRNA 0.45 24 19745177 19830843
XM_039781220.1 False 2723 mRNA 0.51 22 19745177 19801977

Neighbor

gene id symbol gene type direction distance location
si:dkey-119f1.1 smc6 coding upstream 13953 19712664 ~ 19731224 (+)
LOC120546417 NA coding upstream 41786 19699722 ~ 19703391 (+)
si:ch211-225h24.2 tdrp coding upstream 147070 19584702 ~ 19598107 (+)
lin9 lin9 coding upstream 332479 19403856 ~ 19412698 (+)
parp1 parp1,LOC102777090 coding upstream 341978 19391005 ~ 19403199 (+)
LOC120546286 gpr6,LOC104945012 coding downstream 3642 19834485 ~ 19837398 (+)
cdc40 cdc40,LOC103135076 coding downstream 88630 19919473 ~ 19944031 (+)
slc22a16 slc22a16 coding downstream 147021 19977864 ~ 19992886 (+)
LOC120546927 LOC104961664 coding downstream 786407 20617250 ~ 20622631 (+)
epm2a epm2a coding downstream 797998 20628841 ~ 20638714 (+)
G185804 NA non-coding upstream 5887 19739040 ~ 19739290 (+)
G185802 NA non-coding upstream 6913 19737994 ~ 19738264 (+)
G185800 ak9 non-coding upstream 9121 19735840 ~ 19736056 (+)
G185799 NA non-coding upstream 9453 19735518 ~ 19735724 (+)
G185795 NA non-coding upstream 33345 19711527 ~ 19711832 (+)
G185827 NA non-coding downstream 19331 19850174 ~ 19851711 (+)
G185869 mettl24 non-coding downstream 114250 19945093 ~ 19980090 (+)
LOC120546509 NA non-coding downstream 119768 19950611 ~ 19973343 (+)
LOC120546242 NA non-coding downstream 430942 20261785 ~ 20359609 (+)
LOC120546929 NA non-coding downstream 795705 20626548 ~ 20628265 (+)
acp1 acp1 other upstream 97021 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 124394 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 203345 19429595 ~ 19541832 (+)
acbd3 acbd3,LOC102799892 other upstream 317688 19354616 ~ 19427489 (+)
kif25 LOC104961976,LOC100703631 other downstream 21800 19852643 ~ 19860217 (+)
gtf2h5 gtf2h5 other downstream 1340105 21170948 ~ 21172639 (+)
erh erh,LOC100699790,LOC101174968 other downstream 2113900 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 2154936 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 2450124 22280967 ~ 22301585 (+)

Expression


Co-expression Network