nt5c1bb (LOC104946496,LOC101163217,LOC103359106)


Basic Information

Item Value
gene id nt5c1bb
gene name LOC104946496,LOC101163217,LOC103359106
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24207326 ~ 24215960 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781259.1
CATGCCCACCGGggtttaaaaaatacatttccgcAAAGTTTTGTTACAAGCTGCAGCTTGCCTTGCGTTCAAACGCGTTTATTACCGGCTTACGACGTAAGTTACAAACGTTAATAAGAATGTGTGAAGTCAAACCAAACAATTCAGCTCCAACTGAAGACAGCGGAGCGGAAAGAGACTGGGCTGCTGCCAAAGTGTTTTTTGACAgcctcaaaacaaacaaaccaagacCTCCCAAACCCCAGTATGCCGTCACCATCGCCGTCTCGTCTCGCACCCTCTTCGACATGGTAGCAGAGAGGAAAATCTATGAGGACGAAGGATTAGAGAAGTACGTGGCTTATCAGGTGGAGCATGAAAGCGATCCTCTGTTGCCAGGAGTTGCTTTCCCCTTCGTCAAGGCGCTGATGAATGTCAACTCTCGACTGAGGAAGCTCTACCCAGACAGCGAGGAGCTGTTTGACATCGTCTTAATGACTAACAACCATGCCCAGGTTGGAGTGCGCCTCATAAACAGCATTAATCACTACGATTTGACTATAGAGAGATTCTGTATGACCGGAGGGAAAAGTCCTATAGGCTACCTGAAGGCCTACATGACAAACCTTTACCTCTCCAAGGACTCCGAGAAAGTCACAGAGGCCATAGAGGAAGGCATTGCTGCAGCCACAATGTTCATGACACAAACGGAGACTTTGAGCGAAACTCAGCTGAGAGTGGCGTTTGATGGCGACGCCGTCCTCTTCTCGGACGAGTCAGAGATAATCGTGAAGGAACACGGCCTGGACACTTTCTTTGAGCACGAGAAGGCGTTTGAGAACAAACCTCTCGCTCAGGGTCCCTTAAAGTGTTTCCTGGAGGCTCTGGGGAAGCTCCAGAGAAAATTCTACGCCAAGAACGAGCGCATGAACTGTCCCATCCGAACCTACCTGGTGACGGCCCGCAGTGCTGCCAGCTCCGGGGCTCGCGTCCTGAAGACTCTCCGCAGCTGGGGCCTGGAGATTGACGAGGCTCTCTTCCTGGCCGGGGCTCCTAAAGGGCCCCTGCTGCAGAAAATAAAACCGCACATCTACTTTGACGACCAGATGTTCCACATTCAGGGGGCCAATGAAATGGGCACCATATCTGCACACGTCCCCTACGGGATCGGACAGAAGTACCACAAGGGCAAACTCATCGAGCAGCCTGCAAAAAAGGAATAACCTAAAAATGGTTGCAAAATGAAATACGCACCACGTTGTCACCTGACTATAATGAGATTCAGGAAATTAATTTGTTAAAAGAATAACAGAATTTATGTAGAATTTAGCTAATTAATTGGTAATGGCGTCTACAAAATTTCCTACTTTTTGGgatattataaaatattttctACTGTTTTCTTTAGGCTAGCTAGAGTATTATTGATGAGTGGTTGCACTAGATGCCACACACTATTTCACTTGATACTGTTCTGGAAGAGAAACACCAGATTCATCTAACTATTTTGAGATTACTTTTATTGTTTACGTTTGagtttgtcattttctttacaCTTTTATAGgataaacacatttatttatctGGGTTTTGGCTATTGGTCCTTGGTATATTCAGTGTTACCAAGGTGGGAGAATGTATCTGCTGtagtagtatttttttttttctttctctttcataGATTTAAAATTCACCAGCCAGTTAGAAACGGCCCTTTTCAACTCAaaatttccaacgtttttggaTTAACTTTGCTCATTTAATGGGACATATTGATTTCAGTAATTCGTTTTAAAGGGACATTTATGAGGGTAGAATGTCTATGGCTTACAGGGAACAGTGatgctgtttttctttgttacTGTTTCTGCTGTTGATGTGCACAAACTGTATAAAACTTTATAGTTTTCCTCCAACTTTTAAACTAATGTTCTGCATGTTGTTTACACTTTTCAAGTGTCTGGATATCAGACAGGCAGCACACTGTAACTACACTTTTCTATCACCTTATAGTGTTTTTATATAGGACTGactacatatactgtaaatgtttgCAGATTGCATTTGATGTATTTCATGTTGCAAAAATATGTAATTGTTTTCATAACTAAATGTCGTCAAGGGTTTCTCCAGTTACACttgtttgtacatttttatatcGTGTGGTAAAGTTTCTCAGTGCCGGATCATGCAATGTTTAGCattcattgtacttaagtacacaatACCATGATGTTTGCACCAATTCACTTTTCTATAATAGGATTACTATCTTGCTTTTAAGCGTTGAGTGCAGAGGAGTAAAGGAATGTGGAGGAATCCCAGTG

Function

NR:

description
PREDICTED: cytosolic 5'-nucleotidase 1A-like

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781259.1 True 2306 mRNA 0.42 6 24207326 24215960

Neighbor

gene id symbol gene type direction distance location
tmem121ab tmem121,LOC101465360,LOC102792477,LOC107377718 coding upstream 138734 24030053 ~ 24068592 (+)
atp6v1d atp6v1d coding upstream 562682 23640875 ~ 23644644 (+)
rbm25b rbm25,LOC108233444,LOC103353665,LOC102789801 coding upstream 583188 23611009 ~ 23624138 (+)
slc35b2 slc35b2 coding upstream 609927 23589968 ~ 23597399 (+)
rnf8 NA coding upstream 653060 23548578 ~ 23554266 (+)
si:dkey-174m14.3 LOC102302461,LOC103359114,LOC101468873,LOC102795766,LOC102194912 coding downstream 9097 24225057 ~ 24252680 (+)
LOC120546721 NA coding downstream 43588 24259548 ~ 24278489 (+)
rngtt rngtt coding downstream 63460 24279420 ~ 24376144 (+)
cnr1 cnr1,LOC104936193 coding downstream 192111 24408071 ~ 24412330 (+)
akirin2 LOC104936192,LOC106911218,LOC103359156,LOC103457369,LOC102236332,LOC103133163 coding downstream 197887 24413847 ~ 24417800 (+)
G186972 NA non-coding upstream 60108 24072763 ~ 24147218 (+)
G186961 NA non-coding upstream 281678 23868280 ~ 23925648 (+)
G186954 NA non-coding upstream 345392 23829525 ~ 23861934 (+)
G186905 gphn,LOC106608213 non-coding upstream 539199 23666937 ~ 23668127 (+)
G186902 mpp5 non-coding upstream 548896 23650396 ~ 23658430 (+)
G187074 NA non-coding downstream 170996 24386956 ~ 24387168 (+)
G187158 NA non-coding downstream 420765 24636725 ~ 24639484 (+)
G187165 ptprk,LOC102777941 non-coding downstream 440010 24655970 ~ 24656643 (+)
LOC120546772 NA non-coding downstream 793553 25009513 ~ 25012350 (+)
G187212 NA non-coding downstream 895086 25111046 ~ 25143492 (+)
extl3 extl3 other upstream 19462 24155487 ~ 24187864 (+)
LOC120547070 NA other upstream 60564 24144997 ~ 24146762 (+)
G186975 NA other upstream 124222 24079603 ~ 24083104 (+)
nfkbie nfkbie other upstream 617637 23578378 ~ 23589689 (+)
tcte1 NA other upstream 642897 23559498 ~ 23564429 (+)
G187094 bpnt1,LOC102799416 other downstream 290953 24506913 ~ 24507813 (+)
lama2 lama2,LOC104942190 other downstream 594119 24810079 ~ 25009457 (+)
trnat-ugu_3 NA other downstream 1003908 25219868 ~ 25219940 (+)
abracl abracl,LOC103376263 other downstream 1713616 25929576 ~ 25935271 (+)
LOC120546493 NA other downstream 1739290 25955250 ~ 25968925 (+)

Expression


Co-expression Network