chga


Basic Information

Item Value
gene id chga
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15777423 ~ 15785606 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781272.1
GGGCTCTGTTGCAGCGAGGTGTCGAGGACGAAGGCTGCCGTGTCGCGGATGCTTCTGCAGGAAATTTAGCTCTCCAGAAATACCGAAAGGCGACTAAGTTTAGTTCAGGATGCGTCCGTAAACCCACCGGCTGTCCTTAAAGGGGTAAAATCACACATTCTGAGACAAGCTTCGCTATTTTTCTATTCCTGGAGAGCTTTATGCGCCTCGTTTCCAATCATGATCGGAAGAGGACTGTTCGTTTTGACAATACTGTCCAACTGCGTTCTGTCATTGCCAGTGACTCCAAGTCAGCTGGAGAATGAGGACGTAAAGgtcATGAAATGCATTGTGGAGGCATTGGCGGATGTGCTATCAAGGCCCCACCCCATGCCTGTCAGTGAGGAGTGTTTGGTCACACTGAAGACAGATGACAGGCTTGTTTCTATCCTTCGTCATCATAACTTTCTGAAGGAGCTGCAGGAGATCGCTGTCCAAGGTGGTCAGGGGAGAGCTCAGCTGCAGAGAGACACTGGTGCACCTGAACCAACCACTCAAAGTCCTCAGACTGCAGATGATGTTGCTGATCGATCCATGTTGGAGGCTTTAGGAGGCCCAGGTGAACGATCCATCCTGTCCCAAAAGAAGAGGACAGGAAATGGAGACGGAGAGGAAGACAAGGATGCCAGTTTGAGAGATGGAGAGTCACAGGAGGATGTTGCTGAAGAGGTGCAAGAGAAGAGGGGAAATGATGAGAGCCCTGGAAATCACGTCTCTGAGTCTGTGGATGAGTGGAGTGAAGGCAAGGCTAAAAAGaggggcgaagaagaagaagaatatgaagagaaaagatTTCATTCAGAGGAAGAAAACATGATCAAGGATAAGAAAGGTGCTGGATCTGGTGAAAAGAGAAATGCACCCAGAATCAAATCAAAAGAGAAGAAGTTTGATAAAGAAGATGAAGGGGAGACAAATAAGAGATCTGCATTTTTATCACATAGACCtaagcaagaggaggaggaggaggatgaaggggagatgaagagagagagtagTAGGGAGAGCTTGAAGCGATTGACCAAGACGGGCAAGCAGATGCCAGTGAAGAAAGCGCAGCAGCTCAACAGTCAGCAGAAAGTGCCACATCACTCCAAAGAGGTCCCAGAGGAAgacgagaagaagaagaagaaaagaaacacgcaGAGGAGTCAAGAGGAGAAGGAGCTGCAGATGATCGCTAGAAGGGGACCTGAGGAGAGCAGGGGGTTGGAGGAAGAGGGCAGCGCCAGCCGGAAGTCAGAGGAGCCAGAGATTGAAAGCCTGGCAGCCATCGAGTCAGAGCTCGAAAACGTTGCCCAGAAACTCCATGAGATGCGGCGAGGCTGAGAGAGAAagattggataaaaaaaaaatgttgacgcCGCaacctcctcgtcctcctccgcTTTACCAGCTGCCTAGTTTCCACAGATAGAGAGTTTGAATATGTGACAAGATTTTATCTTTCGCTATTTTTCTGGAGGATGCACACACTGCTGCAGCCTCCCTTGTGACATTCTGTCCCTCACATAGATTAGCATAGATGCACGTTGCAGTTAGACATGCATACTGTactaaaaacaaagaaatgcacaAGTTCTGTGCATTTGAACACATGCATataatattcatgaaaaatatTTGTCAGTTAACGTTGACAGCTTGTTTTACTTCATTTTCTCTGACaatcatctctctctttctgcggATGTATCTCGTCTGCTTTTGAAATAATTTTAACACTGCACATTGATTTATGTGAACAGTTGAGGCAGatgcaggtaaacacacactgacaaggTGAGGTTGTACAACGGTTGTAACGGCATGTATACAAAGCTCTTTCTGGGATGCTTACTTACTTTTGGGGAAGCGGAAGAAAAAGACGTAGATGCTTACTTAGTATAGATACAGTTGATTCTAATCAAGCCAAGGCAATAAGTGAACATTTATAGCAGATTAATGAACTGTAATTCATTTATGTAAGAAAACCAATAAATTGAAAAGTTTAACTAGAAA

Function

NR:

description
chromogranin-A isoform X2

GO: NA

KEGG:

id description
K19990 CHGA; chromogranin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781272.1 True 2040 mRNA 0.46 8 15777423 15785606

Neighbor

gene id symbol gene type direction distance location
LOC120546258 NA coding downstream 54082 15720429 ~ 15723341 (-)
wdr21 dcaf4 coding downstream 82802 15688518 ~ 15694621 (-)
pigh pigh,LOC102778419 coding downstream 97171 15677870 ~ 15680252 (-)
vps18 vps18 coding downstream 117932 15653902 ~ 15659491 (-)
ino80 ino80 coding downstream 125128 15606068 ~ 15652295 (-)
sel1l sel1l coding upstream 10165 15795771 ~ 15806849 (-)
arhgap18 arhgap18 coding upstream 22477 15808083 ~ 15830786 (-)
fkbp6 fkbp6 coding upstream 46173 15831779 ~ 15839516 (-)
tmem244 tmem244 coding upstream 55540 15841146 ~ 15919640 (-)
epb41l2 epb41l2,LOC106936101,LOC103373577 coding upstream 136015 15921621 ~ 15980200 (-)
G184668 ctgf non-coding downstream 1937 15772686 ~ 15775486 (-)
G184662 stx7 non-coding downstream 42141 15734418 ~ 15735282 (-)
LOC120546341 NA non-coding downstream 76424 15696500 ~ 15700999 (-)
G184452 LOC103369942,LOC106518591 non-coding downstream 488538 15283249 ~ 15288885 (-)
G184420 NA non-coding downstream 603304 15173711 ~ 15174119 (-)
G184696 NA non-coding upstream 226894 16012500 ~ 16015535 (-)
G184699 LOC107390449 non-coding upstream 239612 16025218 ~ 16033730 (-)
G184702 coq8a,LOC102220701,LOC103144166 non-coding upstream 252144 16037750 ~ 16042215 (-)
G184705 NA non-coding upstream 279065 16064671 ~ 16064914 (-)
G184707 NA non-coding upstream 314538 16100144 ~ 16100732 (-)
rps29 NA other downstream 665944 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 1109822 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 1164477 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 1279053 14472201 ~ 14498370 (-)
mfsd2b mfsd2b other downstream 2286280 13473683 ~ 13491143 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 3220 15788826 ~ 15795638 (-)
LOC120546224 NA other upstream 280248 16065854 ~ 16068309 (-)
LOC120546332 akap7 other upstream 360984 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 705044 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 1040046 16825652 ~ 16835983 (-)

Expression


Co-expression Network