sel1l (sel1l)


Basic Information

Item Value
gene id sel1l
gene name sel1l
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15795771 ~ 15806849 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781273.1
GAATAGGAAGTGTCGATCAGTAGTAAGGGCTTAATATGGCCAGCTAAGTAGTATTTGGTTAATACAAACCTAGTATTAAAACCGAAGTCGAAAGCTTTTGCATGTCGCTGTTAAACTCGGAAGTTTTGAAATATCAAGAGGTATTAGGCAACCATTTTTTAGACCGAGCAGTTGCGTCTCTTTCAAGTATTGAGCTGTGTGGTTGGTCTTTTGTGCGGCTATGTAACGTTAACACTAGCTAgcttgttagctaacgttaacgtaaaACGTCATTCACCCAGCTAGCGTAGCTTTGCATGTGTTAGCTTGTTTGACAGCTACAGTAGTCAAATCAACTAACTAGCTACTATTATCCAGAGAAGATACTGTTCCGTTTAGttgagcgtgtgtgtgagtttatTTATGCAACACTAGTGTGACTCAACTGTAACTGGATGTTGGGTGATAGAAATAGCAGCAGCTACAGCTAGCAGATTGTTAGCTTtgtcaacatcaacaacaatgGGCTATCAAAGATATATAAATACAGCaaggaagttttattttttgaccATTCTGCTGATACTCTTCGTCAAAGGAATAACCGCTGATGAAGAGCAACACGGCAATGACGGACCAGAGTTAAAGTCTTACCATGATCCAGACTCTGAAGAAGAAGACATCCGTCTGGCATCAGGAATTGTGGCTGGGGGTTCTGTGACCTCTGGTCATGAAGTCTCCCAGGCAGAAGAGGAGAAACAGTCACATGGGGATGGactggagggagaggagaaggaggaccTGCCGGAGCAGCCTCCCCCAGTTGAGGAAAAACCTAAAGAGGttcCTGTGGTGAATGGAGGTACAGACCATGGAGAGCCCTGTATCTTCCCATTCCTCTTCCAGGGGAAGGAGTACTATGACTGTACCACTGATGGACGGGGGGATGGACGGCTGTGGTGCGCCACAATCTACGACTACGACCAGGAGAAGAAGTGGGGTTTCTGTGAGACGGATGAGCAGGCACAGCAGAGACTGCAGGCAGAGGAGGTTGAGGAGCAGTATCAGACTGTCCTACGCATGCTCAATGCCACCACCAGGAGGGCCCAGAAGAAAgaATTATACGAAAAACTGCTGAAAGTATCAGAGAAAGGCCACCAGAAAGCCATGGAGAAGGTGGCGTATGCCATGCTGTTTGGAGACTACATGAACCAGAACGTCACTAAGGCCAAAGAAATGTTTGAGAAGCTGGCTATGGAGGGCTCGCCTAAAGCTCAGATGGCTCTTGGCTTTCTGTACGCAGCAGGACTTGGAGTTAACTCGAGTCAGGCTAagGCCCTGGTTTACTACACCTTTGGGGCACTGGGTGGAAACTTGGTAGCTCATATGATCCTGggctACAGATACTGGGGAGGTGTCGGTGTTCCACAGAGCTGTGAGTCAGCACTAACCCACTACAGGCTTGTGGCAAATCAGGTGGCCAGTGACGTGTCCCTGACGGGGGGCTCAGCGGTGCAGAGGATCAGGCTGCTGGATGAGGTGGAGAACCCAGGATCTACCAGTGGGATGTTGGAGGAGGACTTGATCCAGTACTATCAGTTTCTTGCTGAGAAAGGAGATGTCCAGGCTCAGGTGGGTTTAGGTCAGCTTCACCTACATGGAGGACGTGGCGTAGAACAGAATCAtcagAGGGCGTATGACTACTTCAACCAGGCTGCAAATGCAGGGAATACACACGCTATGGCTTTCCTCGGCAAGATGTACTCCGAAGGCAGCGAGTATATCCCTCAGAACAACGAGACAGCCCTGCAGTACTTTCAGAAGGCCTCTGACTTGggTAATCCAGTGGGACAGAGTGGCCTGGGCATGGCCTACCTATATGGAAGAGGTGTCGCCGTGAACTATGAGCTGGCACTGAAATACTTCCAGAAGGCAGCCGAGCAGGGCTGGGTGGACGGACAACTCCAGCTGGGCACCATGTATTACAATGGCATTGGTGTGAAGCGTGATTACAAGCAGGCACTTAAATTCTTCAACCTGGCCTCACAGGCTGGCCACATCCTGGCTTTCTACAACTTGGCCCAGATGCATGCTACTGGTACAGGTGTTATGCGCTCCTGCCACACTGCTGTGGAGCTTTTCAAGAACGTGTGTGAACGTGGTCGCTGGTCAGATCGTCTTATGACGGCCTACGGCAGCTTTAAGGAGGGTGAGACAGACGCTGCGCTGGTCCAGTATCTGCTGCTGGCTGAGCAAGGCTACGAGGTGGCCCAGAGCAACGTGGCCTTCATTCTGGACCAGAAAGGAGTAAAGATCTTCAGTGAGAATGAGACCTACCCTCGTGCTTTACTCCACTGGACAAGAGCTGCAGCACAAGGTTACACTGTGGCCAGGATAAAACTAGGGGACTACCACTTCTACGGCTACGGGACAGATGTGGACTATGAGACCGCTGTCATCCACTACAGACTGGCATCAGAGCAGCAGCACAGTGCCCAGGCCATGTTTAACCTGGGTTACATGCATGAGAAAGGCCTGGGCATCAAACAGGACATCCATTTAGCCAAGCGTTTCTACGACATGGCCGCTGAAGCCAGTCCTGATGCCCAAGTCCCAGTTTTTATGGCCCTGTGCAAGCTGGGCCTGGTTTACACTCTGCAGTACCTGCAGGATTTTAATTTAAAGGACCTGATTTCTCAGGTGGACCTGGACCAGCTTCTGGGCCCGGAGTGGGACCTCTACCTCATGACCGTCATCGCCCTGTTGTTAGGCACAGTCATCGCCTACAGACAACGCCAACACCAAATCATAGTTCCCCCTCGCCCACCGGTCCCTGCCCCAGCGCCCCCTCCTAGACCGCCTCAGGAACAGTCCCCAGCCCAGGCCGAACCCCAGGGACAGGGAGAAACACAAGCCCAGGGCCCGGcccaggaggaagaggagcagcagtGAGAGGAAGCCAGACGGAGCAAGGGCAGTGAAAGACCGACAAGAGGCTCTGCCAGCTGCCCCATGGAGCAGCTGATGCTTACTAGCTGAATACCTGCTAGTTTGAGCACCTCTCCTACTCCACATGCTAAAAGAAGACTGAGGTGGCTGCTGAACTGTGCAGTCTCACATCTCCCTTTCTCCATTTAAAATATATGCTGGTCCTGGGCTGAAGAAAGACACTGGGGGTGTTTACCGACAATGCTACAGAACACAGACTTGGGACTTGCTAGTCTGTGACTCAGGATACTGCCAGAAGCACCCGTGTCCTCACCATGGAAATAGCCTTTTGCTTGCGAAATCAAAGGCTTTTTGGATTTGACTAATCAACATAGTCAAAAGAGTTGGAATCTAATATGTGCTTTAGTTTCTTCCTATTTCTCTTATTGAGAAAATCACTCTTAAGTGGAACTGCCTCAATCCTAGTTTAGCGcagtatttagaaaaaaaatcggGCAGGAAAATGTGAATTCAAATACTTTTATTTGCTAGACCCGGTCTAGTTGGTAAAGCAAGTCAtggttttgcatgtttttttctgctcatTTTGCAGACTTTAATTTTAGGCACCTTTTTTTTCAGATACTTGGGTGAACAAATCTTGCATTACCTTTTCCATTAATTGGTTATTTGTTTAGTTAATATGTCGGTTCTGTACCTTTTTCATACCTGCAATTCACTGAGAAAGATTAATTCATGTTCCTTCAGCATTAGTAACAGtgctaaaatgtaatttaagtcAGTATAATGAGAACAGATACCTGTTTAGTGGTTTACAGTAATCTATGAAAAAGCTGTACTGGATAGATAAAGCCACTAAGCTCTCACCAAATCCTCAGCCCTGATGCAGATTCTGTTTAAAAATGCATACAGACACATCTCCAAGCATAGCCTGATCTGTAGGATGTATACAGTCCAGTGGAAGGAAAAGAACAGTTTTGAAGATGTACTTTTTGTTGGTGGGATATTTTCCCATCAACAGGCTTTGATTTTATTCTAGTGGTTGGTAGCTCAATAGTTCCTCTCATCCCAcatctgccttttttttgttttgtttattaagCCTCAAGTTAGCTGAGACAGTGCGTGTGTGGCTGTGGCATGTGGCTGTTACGAGAATTTCCACCCACTCACCAAAAATCCAACTTGGATCCCTGCCTACACTTTGCCATGGTTAGGCCATACAGTATTTATCAAAACAAAATTAGAAACTTCAGATTTTGCCACATGCAGTTTTTCGCCTCTAAAGTCCATTTGTTCAGTTCCACGATATATGCTTGTTGTTAGAACTATTGAGAATTGATCTCCCGATACGTCTGCATGTAGTGTATGAAGTCAAAAAGGAAACAATCAATGATTCCAAACTGTTTCCTGCATTCACACATCAACACCCACACTACTCACAATTTGTCTAAAATGAATCACTGGTCAAGATTGTTGAGAAGACTGCATTTTTACCATCCTAAATACAAGTttataaagaaataataaatgataTATGGATATTTAA

Function

symbol description
sel1l Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be part of Hrd1p ubiquitin ligase ERAD-L complex. Is expressed in several structures, including digestive system; eye; hatching gland; pleuroperitoneal region; and polster. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to several human genes including SEL1L (SEL1L adaptor subunit of ERAD E3 ubiquitin ligase).

NR:

description
PREDICTED: protein sel-1 homolog 1 isoform X1

GO: NA

KEGG:

id description
K14026 SEL1, SEL1L; SEL1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781273.1 True 4477 mRNA 0.47 21 15795771 15806849

Neighbor

gene id symbol gene type direction distance location
chga NA coding downstream 10165 15777423 ~ 15785606 (-)
LOC120546258 NA coding downstream 72430 15720429 ~ 15723341 (-)
wdr21 dcaf4 coding downstream 101150 15688518 ~ 15694621 (-)
pigh pigh,LOC102778419 coding downstream 115519 15677870 ~ 15680252 (-)
vps18 vps18 coding downstream 136280 15653902 ~ 15659491 (-)
arhgap18 arhgap18 coding upstream 1234 15808083 ~ 15830786 (-)
fkbp6 fkbp6 coding upstream 24930 15831779 ~ 15839516 (-)
tmem244 tmem244 coding upstream 34297 15841146 ~ 15919640 (-)
epb41l2 epb41l2,LOC106936101,LOC103373577 coding upstream 114772 15921621 ~ 15980200 (-)
stum stum,LOC102783313 coding upstream 239070 16045919 ~ 16061907 (-)
G184668 ctgf non-coding downstream 20285 15772686 ~ 15775486 (-)
G184662 stx7 non-coding downstream 60489 15734418 ~ 15735282 (-)
LOC120546341 NA non-coding downstream 94772 15696500 ~ 15700999 (-)
G184452 LOC103369942,LOC106518591 non-coding downstream 506886 15283249 ~ 15288885 (-)
G184420 NA non-coding downstream 621652 15173711 ~ 15174119 (-)
G184696 NA non-coding upstream 205651 16012500 ~ 16015535 (-)
G184699 LOC107390449 non-coding upstream 218369 16025218 ~ 16033730 (-)
G184702 coq8a,LOC102220701,LOC103144166 non-coding upstream 230901 16037750 ~ 16042215 (-)
G184705 NA non-coding upstream 257822 16064671 ~ 16064914 (-)
G184707 NA non-coding upstream 293295 16100144 ~ 16100732 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other downstream 133 15788826 ~ 15795638 (-)
rps29 NA other downstream 684292 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 1128170 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 1182825 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 1297401 14472201 ~ 14498370 (-)
LOC120546224 NA other upstream 259005 16065854 ~ 16068309 (-)
LOC120546332 akap7 other upstream 339741 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 683801 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 1018803 16825652 ~ 16835983 (-)
LOC120547341 NA other upstream 1459510 17266359 ~ 17269634 (-)

Expression


Co-expression Network