rps6kc1 (rps6kc1)


Basic Information

Item Value
gene id rps6kc1
gene name rps6kc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19102583 ~ 19126659 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781341.1
TCTAATTAATTTGCCTCCTGTCACTGTGCTGTCAGGGAATGAATGTGAATGGCTAGCCGACTGGTAGCTTTGGCAATGTTGTCACTATCAGAATGATCTCGCAGCGGGACAGAGGAGAACTGGCTCGGTTTTATACTGTCACAGATCCCAAAAAGCATCTGAAAGGCTATACTGTGTACAAAGTCACCGCAAGGATAATCTCCAGGAAGAACCCAGAAGATGTCCAAGAGATAACAGTATGGAAGAGATACAGTGATTTCCGGAAGCTTCATCAGAACCTCTGGCAGCTGCACAAGAATGTATGTAGACAGTCGGAGCTGTTTCCTCCATTTGCCAAGGCTAAAGTCTTTGGTCGTTTTGATGACTCAGTAGTTGAGGAAAGAAGACAGTGCTCCGAGGATCTGCTGCAGTTCTCTGCTAATATCCCTGCTCTTTATAGCAGTCAGCATATCCAAGATTTTTTCAAGGGAGGGGAGGTCCACGACGGCTCGGAGCTCATTGGACCAGCTGAGCCTTTTTCTGACTTCCTGGCAGACAGTTTATCAGACTGCAGCTCTGACGTTCAAAGAGACATCAGTGGTGCAGATGATTTGACTATCACATCTGAGTATGGAGGCCCGTCCAGTGACAGCGACCTGACCTCCCTGGCTGTGGATACAGACTCTTTGGCTGGGCTAGATGATGGCATGGCCTCAGGCCGCACCTCCCCAAACCAGCCACAGGGGGGAGCCACCAACATTGGCAGCAGTTGCAGCCCTCGCTTGCCCTCCCTGCACGGTCGCCGCACTCCATCGCCTGCTCCAGTCCCTGCCTCCTCAGCCCCGAACCCAGAGGTCAGCTGGTCAGGCCGAACGCCACTCTTTTCCAGCAGTCTGAAGAAAGCCAGTGGTGGCAACCCAAAGGAGGTGAAGTCAGACTACCTAGACAGAGCCAGTGAGCTCATCTGTTTGGCTGTACAGAAGGAGAAAGAGCAGGACTTCCAGGCAGCTTTCTCCTGCTATCGTAGCGGAGTGGACCTGCTGCTGCAAGGAGTGCAAGGTGAGCCCAGTCCCACGCGGCGAGAggcagtgaagaagaagactgcagaGTATCTAATGCGTGCAGAACAGATATCCAGTCAGCATCTGAGAAGCAACATGGGTCAAGGGTCAACACAGACAGTGGCTTTGGGGGCACAGTGCTGCCCATCCACCAGCAGAGGAGGCCAGCAGAGTCCGTCCGAGGAGCTGAGAGCTTACAGGGTGTTGGGGGTGATAGATAAGGTTCTTTTGGTCATGGACAAGAGAACACAAGAGACGTTCATCCTgaaaGGTCTGAGAAAGAGCAGTGACTGTGGGCAGACTAAGAGGACAATTATGCCTCACTCAGTGCCGCACATGGTGCAGCTGAGAAAGTTCATTGTCTCTGAAGACACAGTTTTCCTTTTGCTGCAGTATGCTGAAGGTGGTAAGCTGTGGTCTCACATTGGAAAGTACCTGCGTAATTCCAGCCCAGAAGAGAGCTTTGACATTCCTTTCATCCAGAAGAGCCACACAGTGGCTGTACACTCTCCACAACATGCTGTACCACAGCTGGATGTAGGTTCAGCCAGTTCTGGTTCTGGGCCGGTTGCTTGTTCTGATTCTGTCTCAGGGCTTCAGAACAAAGGGGAGAAACTCATTGTGTCTCCTAAGAAAAGCGTTCTCCCTCCCAGGCTTATCGAACAAATTGGTGCCCAGTCAGACTCTGGAGCCACGTCTGAGGAAGAGTGCACCAACAGTTATTTGACACTTTGCAATGAGTATGAACAAGACAAAGTAGAACCAGATGCACtagaagaagagaaggaggaggaggaaaagagtgAACATGAAATGCTGTCCCTGGAAGTGCCCGTTGCGACGACCACTACTTCCTCGCGTAGCCGCTCCCTGCTTAGCAATGACAGCCTATCACCTATCAGCTCTCAAGAACTTGGCTTTTTTACCGAGTCGTCCGACAAAAGTGGCCACACCCTTGACAATGACCAATACCGCGTCGAGGGACAGGACCACAGTGAAGTGTTCAGTCCTTTGCCCTCACCTGCTGTGCCTCTGTCTTTGGATCAGTCCAAGCACACGCCAATGGAGTTTTTCCGTATTGACAGCAAAGACAGTGCAAGTGAGGTGACCTGTCTGGACTCTCATAAGCCGGTTCCCCTCTTTTCTACATCAGACCTGGGCTCTGAGGATCTTCCAGAGCTGGCTCAGGAGGTCAAGTACCACAGCTCGGAGCTTTGGGAATTGGACTGTAGCGATAAAGGCTCCAATGAGTCAGTGCCAGTCATCTCTTTTAAAGAGGCAGTAGTGGAGGATGAGGGACACCCACCAGACCTTTTGGTCAACCTGCCTATAACGGGTGGGACTGTAGACTCTTTACAGGAAGAATTAGACACTTCGGGGGGGGTTGTGGGACTCGAGGCCACAGCCTCTCCTCAGAAGTTCATTCAGCCTGATGTTTTACAGCTTCCCGTTCAccctgaggaagaggaggagcagctGCTGGAGCAGGACCTTTCATCTTTATGTACAGCCTCTGCAACATATGACACCAGTGTTGCATCTTCCTCTCCCTTCAACTCACTGTGGGATGACTGCAGCGTGGCGTTTGGGCAAGAAGCCTCTGACAAAATGGTGGTTCATTCTCCATGCCAAAATAATGAACTTCCCCTTGACCTTCCAGTTACTGATCTTCTAAATGAGAAACCAGAGGCCAGTACAAGAGTAAATACAGACTTAGTTCCAGACCCCAGTAGCAACAGCACAGGCTCTATCCCCGCCACAAATGGGACTAAGGCATGCACAGTGGTTGAGAGTTTATTAGGTCTTGATGGTGAATCAAGAGTTATTAGCACTACAGGTGGCAGCGAATTTGATAAAGAAGTATCGCGGCTGTTTGCAGAGCTGGATGAGCTGTCGTTGGCTGCATCCCAAGCTCGTATCCCGGAGGAGTTTGTCCGATGCTGCGCGGTAGAGATGGTTAAAGCCCTGGATTGTCTGCACCAAGAGGGCGTCATCTGTCGAGACCTTAACCCCAACAACATCCTGCTCAACCACCAAGGTCATGTTCAGCTTACCTACTTTTGTAGCTGGAATGATGTGGAGGAGTCCTGTGACAAAGAGGCCATTGCCAATATGTACTGTGCACCAGAGGTGGGAGGTATCAGTGAGGGGACCGCAGCATGCGATTGGTGGAGTTTGGGCGCCGTCCTGTTTGAGCTCCTGACAGGCATGTCTCTGCTGCGGTGCCATCCAGCGGGAATTGGTCGCCACACTGCTCTCAACATCCCAGCTGTCtatttaggggggggggggTTGCTCCAGTACAACCCAATGGAGAGACTGGGGGCAGGTGTGGGAGGCGTGGATGATATCAAATCCCACCCTTTCTTTGCCAGAGTGGACTGGTCCAAATAG

Function

symbol description
rps6kc1 Predicted to enable ATP binding activity; phosphatidylinositol binding activity; and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in early endosome. Is expressed in central nervous system and retina. Orthologous to human RPS6KC1 (ribosomal protein S6 kinase C1).

NR:

description
Ribosomal protein S6 kinase delta-1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007154 cell communication biological_process
GO:0005524 ATP binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K20839 RSKL; ribosomal protein S6 kinase-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781341.1 True 3434 mRNA 0.52 16 19102583 19126659

Neighbor

gene id symbol gene type direction distance location
moxd1l NA coding upstream 163 19097059 ~ 19102420 (+)
si:ch211-203k16.3 LOC102290548,LOC102780528,LOC100708179,LOC101478729,LOC102192128,LOC103369909 coding upstream 26101 19070669 ~ 19076482 (+)
prkg3 LOC104947339,LOC103364985,LOC100708987,LOC101479945 coding upstream 99553 18990946 ~ 19003030 (+)
LOC120546316 LOC104947340,LOC103364984,LOC107377588,LOC106510778 coding upstream 112809 18982177 ~ 18989774 (+)
ctsbb ctsb,LOC104947341 coding upstream 121405 18977830 ~ 18981178 (+)
smyd2b smyd2,LOC103360985 coding downstream 133603 19260262 ~ 19269398 (+)
LOC120546239 NA coding downstream 201348 19328007 ~ 19333616 (+)
parp1 parp1,LOC102777090 coding downstream 264346 19391005 ~ 19403199 (+)
lin9 lin9 coding downstream 277197 19403856 ~ 19412698 (+)
si:ch211-225h24.2 tdrp coding downstream 458043 19584702 ~ 19598107 (+)
G185599 snx9,LOC106928315,LOC103138599,LOC106957401 non-coding upstream 18799 19082696 ~ 19083784 (+)
G185593 NA non-coding upstream 56476 19045414 ~ 19046107 (+)
G185592 kcnk2 non-coding upstream 59035 19043224 ~ 19043548 (+)
G185591 kcnk2 non-coding upstream 78005 19024264 ~ 19024578 (+)
G185590 NA non-coding upstream 79553 19022696 ~ 19023030 (+)
G185656 NA non-coding downstream 151448 19278107 ~ 19279357 (+)
G185696 NA non-coding downstream 426615 19553274 ~ 19554235 (+)
G185711 NA non-coding downstream 525578 19652237 ~ 19652575 (+)
G185716 tmem18 non-coding downstream 565477 19692136 ~ 19693056 (+)
G185793 NA non-coding downstream 581672 19708331 ~ 19708930 (+)
LOC120547227 LOC104932566,LOC103364615 other upstream 390589 18705856 ~ 18711994 (+)
ylpm1 ylpm1 other upstream 467531 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 962323 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 1047657 18020956 ~ 18054926 (+)
G185237 NA other upstream 1185335 17916853 ~ 17917248 (+)
LOC120546624 prox1 other downstream 77495 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 227957 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 241061 19367720 ~ 19389223 (+)
nhsl1b nhsl1,LOC101470763 other downstream 302936 19429595 ~ 19541832 (+)
zgc:193593 NA other downstream 445914 19572573 ~ 19620783 (+)

Expression


Co-expression Network