matn3a (matn3,LOC103362679,LOC101066369)


Basic Information

Item Value
gene id matn3a
gene name matn3,LOC103362679,LOC101066369
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22775637 ~ 22781793 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781344.1
GATATTTGAGTCCTTTTCAATAACGTCCTCCATGCCGTCTTTTACGGTGGCCTGGAGGTCATGTCCCAGCCTTGGATTGGGCAGACGGTTTGACGCGTCGCACTGGGAGCCCCTCATATGTGGAGGCGGTCAGACCCCTGCTGAGCTGAGCAGCATCCTCTGAGACAGAGCAGGCACAGGGCAGACCACCGGAGGACTCTGCATGCAGATAATGATGAAGTCTTTCCTCTGGAGCCTCTTGTTCTGCGCTTCGCTGCTGCTGTCTGATGTTCTGGCAACATACCAGCTCAGTGCGGGGGATCCTCAGCTGATCGCCGCACAAAGTTACGCACAAACCAGAAATAATGGCCGACCACCGTTCAGGACCCTGGATCCCTCAATTCAAAGAAGTGATTACACGTATAGAGGAGGGTATCACTACCACTACCAGCCACCAAGGATCCCTCCACCGGTAGTGTATCGACCTATGCCTCTGTTTCCTCCAGTGACTTACCACAGGCCCTCAGTCCCCATGCCGCCCTATCACCACAGATTCAAAGGGCCAGTTGCACCACAAATGCACCACATATACAAAGGGCTATCTCCACCAGTAGCTCACCATCCCCATCAGAGGCTCAAAGGCCCATTCCCTTATAAATTAAAAGGTCCATGTCCAACAATGTCAGACCCAACAGTACCAACAGCACCTGTGGTACACCTTCCTACCGTCCCTCCAACTCTACCAGAGCCAACAGTGCAGCCAACTCTGCCAGCAACTACAGTAGCACCAGTGACAACCATCCTGCCAGTGGTGGTGACCACTGTGCTGCCGGTGGAGACCACGGCTCCTGTGACGCTACCGGTCAGTACCCAAAGCGGCTTCATCACCACCGTCAGTCCTGTGGAGACAGtaaACAAACCCGACATGAAGAAAGCCATCTCCCGCATCGAGCCCTTGGCGGCCGGCACCATGACGGGCCTCGCCATCAAGATCGCAGTGAATGAAGCCTTCACCGAGGAGTCTGGAGCCCGGCCTCGCTCCAGGAAAATCACCAAAGTGGCCATCATTGTGACAGACGGGAGACCCCAGGACCAGGTGGAGGAGGTGTCTGCTGCAGCTCGGGCTTCAGGCATCGAGATCTACGCTGTAGGGGTGGACCGAGCTGACATGCGCTCCCTGCAGCTGATGGCCAGCATCCCTCTGGAGGACCACGTCTTCTATGTGGAGACCTACGGCGTTATCGAGAAGCTCACCTCAAAGTTCAGGGAGACACTGTGTGGTCTGGACCCCTGTGCCATGGGACATGACTGCGAACACATATGTGTCAACAGCAATGCCTCTTATTACTGCAAGTGCCGGAATGATTATATCTTGAATGCGGACAAGAAAACATGTTCCCTGAAACAGATGAAGGCGGTGGTGGTGGAGGATCCCTGTAAATGTGAAGCCAGACTGGCTTTCCAGAAGCAGACACAGGCTGCCATCCAGCAGCTCACAGCCAAGCTAGTCGATGTGTCTGGGAGAATCGAGCGTCTGGAGAACATGGTGGGCCGTGCTTAAAGCTGGACACAGTGAGACCGTTCGCTGGTTTACTTCCTGGACATGGACATGTGCTTCCTGTCATCCACCGTCCCACAACTACTGTATGGACTTCAACCACAGAAGGAGTGAAGCTGTGATTCATAAACCAATACCCCTCAAGTTTCTGACTGTAGTGGACTGTTGAGTAACAATATCTGCAGTTGAATGTGTGCTTTTCGTTAATGCAATATTTTTCAAACTGCAGCTACCTACACTATTTTCTCCAAACACCTATGATCATAGTATAACGTATGTTAAACAAGTGTTATTTCTAGTgtttctcctgtactgtattgtttttctgtgtcctgTTTGTACAAAGTTGCATATTGTGTATATAGTAGTTTTTATGAAATATCAAATTGTATTTACTTAGTaaacaattttgtttttatgctCTAAAGCATTCAACCAGTAAAATGTTTAATACTTAACATTTTTGcatattttctttattatatCCTTTCTAGGTTTTATTGTTGTATCATGCATTATAGAAATGTTCATCTTCTGTGTCTGTGAATGTTATGAGATGACATATAATGTTTGCTAAGAATTATAAATGTAACCAAGCAAACAAATTGGACAATAAAATAATCCCAAAGGAGGTTGTTGTGCA

Function

symbol description
matn3 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in skeletal system development. Predicted to act upstream of or within cartilage development. Predicted to be located in endoplasmic reticulum lumen; extracellular matrix; and extracellular region. Predicted to be active in collagen-containing extracellular matrix. Implicated in multiple epiphyseal dysplasia 5; osteoarthritis; and osteochondrodysplasia.

NR:

description
uncharacterized protein LOC110529390 isoform X5

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781344.1 True 2180 mRNA 0.49 7 22775637 22781793

Neighbor

gene id symbol gene type direction distance location
laptm4a laptm4a coding upstream 1005 22762357 ~ 22774632 (+)
LOC120546327 NA coding upstream 14079 22756018 ~ 22761558 (+)
pum2 pum2,LOC102798245 coding upstream 20493 22720115 ~ 22755144 (+)
LOC120546322 apob coding upstream 59805 22700059 ~ 22715832 (+)
LOC120546321 NA coding upstream 88287 22671825 ~ 22687350 (+)
ttc32 ttc32,LOC102775905 coding downstream 5299 22787092 ~ 22790555 (+)
zpax1 NA coding downstream 8927 22790720 ~ 22795363 (+)
ttbk2b LOC103372651,LOC104945868 coding downstream 66305 22848098 ~ 22856575 (+)
znf106b NA coding downstream 79015 22860808 ~ 22875214 (+)
nrbp1 LOC100699297,LOC102778226,LOC102314540,LOC103372645 coding downstream 110379 22892172 ~ 22902489 (+)
G186578 rhob,LOC104947257 non-coding upstream 55744 22716970 ~ 22719893 (+)
G186506 NA non-coding upstream 237921 22535659 ~ 22537716 (+)
G186452 NA non-coding upstream 480940 22294442 ~ 22294697 (+)
LOC120547080 NA non-coding upstream 941855 21832948 ~ 21833782 (+)
LOC120546760 NA non-coding upstream 1029083 21745581 ~ 21746554 (+)
G186622 NA non-coding downstream 17942 22799735 ~ 22800058 (+)
G186641 NA non-coding downstream 65079 22846872 ~ 22847674 (+)
G186697 NA non-coding downstream 235164 23016957 ~ 23018800 (+)
G186725 NA non-coding downstream 361637 23143430 ~ 23143648 (+)
G186726 NA non-coding downstream 362166 23143959 ~ 23144290 (+)
lin28b lin28b other upstream 474052 22280967 ~ 22301585 (+)
G186394 mycn,LOC108233328 other upstream 710048 21985779 ~ 22065589 (+)
erh erh,LOC100699790,LOC101174968 other upstream 828637 21944743 ~ 21947000 (+)
gtf2h5 gtf2h5 other upstream 1602998 21170948 ~ 21172639 (+)
kif25 LOC104961976,LOC100703631 other upstream 2915420 19852643 ~ 19860217 (+)
kcns3b kcns3,LOC103372653 other downstream 26086 22807879 ~ 22810520 (+)
si:ch211-22i13.2 NA other downstream 180240 22962033 ~ 22966010 (+)
dtl dtl other downstream 306027 23087820 ~ 23095505 (+)
ppp2r5a ppp2r5a other downstream 314119 23095912 ~ 23142640 (+)
rsph3 rsph3 other downstream 410845 23192638 ~ 23196996 (+)

Expression


Co-expression Network