LOC120546447


Basic Information

Item Value
gene id LOC120546447
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34018631 ~ 34035953 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781374.1
CCTGATGAAATTGAAAGTAAATTTGTGGGTGACGAGACGAGGGGGAATTTCCTGTTTTTCTGTGGGAGGATCACTTAATtttaaatactgtatttgaCATTACTGACAGCTACGTACATTAAATTACAAACTGTTAGTCCTAGGCTCATatttcatctttctctcttaCTTTGTTCCTGTACAACAACCCAGCCATGGGAGCTGAACACTCGGCTCAAGCAGCTCCACTTCTCAGCAAACCATGGAGGGAAATAAACTGGGGAGACAACCAGAGTGATCTGCAGTATGTAAAGGCCTATAAACCTCAGCCTGATGGCCAGCTGCTCAGGATTCTTCTTCATGGACAAGTTGGAGCTGGAAAGTCCAGTTTCATCAATTCTGTCCAAAGTGTCGTACATGGCCAAATGTACGCACATGCTTTTGCAGACAACACCTCTCGCAGCTGTTTCACCAAAAAGATCGGCTGACTGTGGCCTGCTGGTCGTACCCAGAGTCTGACTGGTGACTAAGAACTAAGAAGTATCTGGCTTTTGCAGTCCGGACCCCCAAACCCTGGAATGACCTTCCTGCAGAAATTAGgattttggagaaaaaaagaacgTAAAGAAACTGAAGCTCCTCCATTTCTCAGCAAACCATGGAGGGAAATAAACTGGGGAGACAACCAGAGGGATCTGCAGTATGTGAAGGACTACAGACCTCAGACTGACGGCCAGCAGCTCAGGATTCTCCTTCATGGACAGGTTGGAGCTGGAAAATCCAGTTTCATCAACTCTGTCCAAAGTGTCTTACAAGGCAGAATGTACACCCAGGCTTTGGTGGACAACACTTCTCACGACTGTTTCACCAAAGGGTACACAACCTACAATATCCAAAAAGGCCCAGAGACCTTTTACCCTTTTGTCTTCAATGACATCATGGGCCTGAGTCCAACCGGTGTCCAAGTGAATGATGTCAAACTGGCTATGATGGGAAAAGTGAAGGACGGTTACGGGGTTGTCAGAGGGGTCCCATTCTACAACAACCATCCAACTGACAACGACAAAGTGCATGTTCTGGTTTGTGTCATTGATGCCAACACGGTAACTTGCATGCACAAAGAAATTGAAGAAAAGATTCGCCAAATCAGGATTGAAGCCACTCACCTGAATATTCCTCAAATGGCAATTCTAACCAAGATTGATGAGGCCTGTCCTGAAATCAAAGACAATTTACAGAATGTCTACAAGGTCAATTACCTGAAGGAAAAGATGGAGCAGTTCAGTGTAAATGTGGGAATCCCCATGAACTGCATCTTCCCTGTGAAGAACTACCATGAAGAAATCGACCTCAACAGTGACGTTGACTCACTGATCCTGAGTGCCCTGAAACACATCATCAACTTCGGAGACGACTACATCAACTTTGATAAGAACGATGCAGTAAACCTGGCCCTACACTACATCCTCCGGCACCTGGACTCTGCAGGAACTtacgccaggatcctgtttttggtcttcagctctgccttcaacaccatcatcccggctctgctccaggagaagctctcccagcttggtgtgcct

Function

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781374.1 True 1565 mRNA 0.46 13 34018631 34035953

Neighbor

gene id symbol gene type direction distance location
LOC120546767 LOC103364257,LOC107092024 coding upstream 5183 34008396 ~ 34013448 (+)
LOC120546181 adgrg6 coding upstream 352378 33629800 ~ 33666253 (+)
LOC120546153 LOC103369399 coding upstream 731691 33279911 ~ 33286940 (+)
LOC120546516 NA coding upstream 780304 33231034 ~ 33238327 (+)
bub1 NA coding upstream 789792 33201405 ~ 33228839 (+)
LOC120547053 NA coding downstream 1103 34037056 ~ 34052641 (+)
LOC120547054 NA coding downstream 20027 34055980 ~ 34065783 (+)
LOC120546448 NA coding downstream 69442 34105395 ~ 34110113 (+)
LOC120546562 NA coding downstream 74126 34110079 ~ 34173614 (+)
LOC120546449 NA coding downstream 148236 34184189 ~ 34187555 (+)
G189294 NA non-coding upstream 74047 33886415 ~ 33944584 (+)
G189352 NA non-coding upstream 80282 33938055 ~ 33938349 (+)
G189302 NA non-coding upstream 121058 33887512 ~ 33897573 (+)
G189345 NA non-coding upstream 126181 33890507 ~ 33892450 (+)
G189339 NA non-coding upstream 133633 33839721 ~ 33884998 (+)
G189439 NA non-coding downstream 10658 34046611 ~ 34047007 (+)
LOC120546208 NA non-coding downstream 33648 34069601 ~ 34071742 (+)
LOC120547081 NA non-coding downstream 44306 34080259 ~ 34096714 (+)
G189450 NA non-coding downstream 65558 34101511 ~ 34102289 (+)
LOC120546319 NA non-coding downstream 66790 34102743 ~ 34104308 (+)
LOC120546766 LOC103364256 other upstream 18095 33859146 ~ 34000536 (+)
G189305 NA other upstream 32155 33965583 ~ 33986476 (+)
G189307 NA other upstream 79244 33932064 ~ 33939387 (+)
LOC120546446 LOC103364256 other upstream 162219 33846444 ~ 33856412 (+)
LOC120546444 NA other upstream 247229 33765353 ~ 33771402 (+)
LOC120546451 LOC103364258,LOC108444017 other downstream 342547 34378500 ~ 34455344 (+)
G189544 NA other downstream 426955 34462908 ~ 34464897 (+)
G189541 zdhhc14,LOC102790573,LOC102208331 other downstream 446911 34482864 ~ 34503755 (+)
G189570 NA other downstream 450471 34486424 ~ 34487177 (+)
LOC120546454 NA other downstream 495435 34531388 ~ 34585439 (+)

Expression


Co-expression Network