ddx1 (ddx1)


Basic Information

Item Value
gene id ddx1
gene name ddx1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16956248 ~ 16965367 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781405.1
TTTAGGAATTATCGTTACCGGACCGGTAGTTCACTAACCGGAACCAATGACATACGACTACCTACTAAACGTGCTGCACCGAGCCGAACATTCTGAACACGTTttaacatccggttaatttggACTCGTAGCAGTAATGGCAGCGTTTTCAGAAATGGGGGTTATGCCTGAAATCGCGCAGGCTGTGGAAGAGCTGGAGTGGCTGCTACCTACTGACATCCAGGCAGAGTCTATTCCCCTCATTCTTGGTGGAGGAGATGTACTTATGgcaGCAGAAACTGGTAGTGGCAAAACAGGAGCCTTCAGTATCCCAGTGATCCAGATTGTGTATGAGACCCTGAAGGATCAGCAGGAGGGCAAGAGGGGCAGAGCTTCCATCAAGACTGGAGGAGCTATTTTCAACAGTTGGCAGATGAATCCTTATGACCGCAGCACAGCCTTTGCAATTGGTCCAGATGGACTGTGCTGCCAGAGCAGGGAGTTTAAAGAGTGGCATGGCTGTCGCTCTACAAAAGGGGTTACCAAAGGGAAGTACTACTATGAAGTGACCTGCCATGACCAGGGTCTGTGTCGCATTGGCTGGTCCACCAGTCAGGCAGCCCTGGACTTGGGAACTGATAAGTatggttttggttttggtgggACTGGAAAGAAATccaacaacaagcagtttgacagctatggagagGAGTTTACCATGCACGACACTGTCGGATGCTACTTGGATCTAGACAAGGGCCAAATATCCTTCTCTAAAAATGGTAATGACCTGGGTTTGGCTTTTGAGATCCCTCAACATGTGAAGAATCAGCCCTTCTTTGCCTCCTGTGTGCTCAAGAATGCAGAGTTGAAGTTCAACTTTGGAGGAGAAGACTTTAAAAATGCCCCTAAGAGTGGGTTTGTTGCCCTGAACCAGGCGCCAGAGGGCCACACAGTCAAATCTTCTCAGGCAGGCACTGCCAAAGTGAGTCAGGTGAAAGCATCATCCAACGCGCCCAAAGCCCTGATCATCGAGCCTTCTAAAGAATTGGCCGAACAAACTCTCAACAATGTGAAGCAATGTGCAAAATATGTTGATAACCCCAAACTCAGAGAGCTGTTGGTGATTGGTGGTGTGGCTGCCAAAGACCAGCTGGCTGCTCTGGAACAGGGGATCGACATTGTGGTGGGAACACCCGGCAGACTGGACGACCTCATATCCACTGGGAAGCTCAGTCTGGCCCAAGTCCGCTTTCTTGTCCTGGATGAGTGTGACGGCCTACTGTCCGCAGGCTATACAGACTTTATCAACAGGATCCACAACCAAATCCCTCAGGTCACTTCTGATGGCAAGAGACTGCAGGTGATTGTGTGTTCAGCCACTCTGCATTCGTTTGATGTAAAGAAGCTGTCTGAGCGTATCATGCACTTTCCCACTTGGGTGGACCTGAAGGGCGAGGACTCTGTCCCTGAGACTGTCCACCACGTGGTAGTTCCTGTCAATCCTAAAACCGATCGCCTCTGGGAGCGCCTTGGCAAGAACCACATCCGGACTGATGAAGTCCATGCCAAAGATAACACCAGACCAGGAGCCAATTCTGCAGAAATGTGGTCAGAAGCCATCAAGGTGCTGAAGGGCGAGTACACAGTGAGGGCCATCAAAGAACACAAGATGGACCAGGCCATAGTCTTCTGTCGCACCAAGATTGACTGTGACAACTTGgaacaatacttcattcagcaAGGAGGAGgtccggACAGTAAAGGCCACCAGCTTTCCTGCGTCTGTCTCCATGGTGATCGTAAGCCCAACGAGCGAAAAATTAACTTGGAGCGCTTTAAGAGAAAAGAAGTAAAGCTCTTGGTCTGCACAGACGTAGCTGCCAGAGGAATTGACGTCCACGGAGTTCCTTATGTGATTAACGTCACCCTGCCAGATAAAGAATAACTATTCCCGGAGGGATTTTACAATAAATTAGAATATTTAATACAGCTAAAATCATCACCTTTCCTTTCAACTTGCAGAATGGGACTGGCCATCTCcttggttgctatggagaaggagaagGTGTGGTACCATGTTTGCCCGAACCGAGGCAGAGGCTGCTACAACACCCGGCTGAAGGAGGATGGAGGTTGCACCATCTGGTACAACGAGAAAGAGCTCCTGTCAGATATTGAGGAGCATCTAAAGTGCACAATCACCCAGTGTGAGCCAGACATCAAAGTACCTGTGGATGATTTTGACGGAAAGGTCAGCTATGGTCAGCGCAGAGCATTGGGAGGTGGTAACTACAAGGGTCACGTGGATATTCTGGCCCCGACGGTCCAGGAGCTGGCTAACCTCGAGAGAGAAGCCCAATCTTCCTTCCTTCACCTGGGATACATGCCAAACCAGCTTTTCAGAGCCTTCTAAACACACCCCAACTAGCACAACACTGTAGGCGGCACTGAATGGAGCAGGTCCACATGGGTTAAGATGCAACCAATAGGATAGTACGAAGTCTTTAGCAACCAAGCAacattgtgcttttatttttccaACATATAAACATAACTTGGAAATGATTTACATTTAATGTATACTACAAGGTGGCAAAATGCATTTCACTGCTAATGACAAACTTCTCTACAGTCCACGGGATAAAGTTCAGATTTAGTGCTTTGGAAGATTGTAAGCATTTACTATGCAGAACTCCTTGGCCTTCACTACACTGCTTGAAAGAATAgtatggaatggaatggaatccTTGACATGTATTGCAAAACCTAATTTGTTggatttttgtgttttctgattgATACggtttaataaaatatttaagttTAAGAGTAATTGGCTAAAAAGTCTATGTAATTAAGTGGCTGTTTTCTTTCCTGAAATAAATTCATAGCCTGCTCA

Function

symbol description
ddx1 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and exonuclease activity. Predicted to act upstream of or within tRNA processing. Orthologous to human DDX1 (DEAD-box helicase 1).

NR:

description
ATP-dependent RNA helicase DDX1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13177 DDX1; ATP-dependent RNA helicase DDX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781405.1 True 2881 mRNA 0.47 26 16956248 16965367

Neighbor

gene id symbol gene type direction distance location
LOC120547041 NA coding downstream 311 16937777 ~ 16955937 (-)
LOC120546412 NA coding downstream 22873 16912722 ~ 16933375 (-)
itsn2a itsn2 coding downstream 36570 16880795 ~ 16919678 (-)
LOC120547035 esrrg,LOC100695726,LOC102786194,LOC102294499 coding downstream 133183 16792438 ~ 16823065 (-)
si:ch211-57i17.5 LOC101467041,LOC102294206,LOC104964595 coding downstream 171347 16783049 ~ 16784901 (-)
lratd1 fam84a coding upstream 212997 17178364 ~ 17180711 (-)
scml4 LOC100701983,LOC102215682,LOC101464936,LOC102300852,LOC104950495 coding upstream 304494 17269861 ~ 17287641 (-)
sec63 sec63 coding upstream 325799 17291166 ~ 17306226 (-)
iyd iyd coding upstream 341745 17307112 ~ 17310447 (-)
armc1l LOC103368599,LOC104950028,LOC108242485 coding upstream 409830 17375197 ~ 17378628 (-)
LOC120547043 NA non-coding downstream 20067 16933693 ~ 16936181 (-)
G184903 NA non-coding downstream 131651 16824296 ~ 16824597 (-)
G184897 NA non-coding downstream 181977 16772721 ~ 16774271 (-)
G184877 NA non-coding downstream 193560 16709755 ~ 16762688 (-)
G184989 NA non-coding upstream 204322 17169689 ~ 17170262 (-)
G185031 ppp1r14c non-coding upstream 347118 17312485 ~ 17332973 (-)
G185039 map7,LOC107374525 non-coding upstream 396642 17362009 ~ 17362903 (-)
G185054 NA non-coding upstream 431104 17396471 ~ 17399451 (-)
G185035 NA non-coding upstream 460837 17426204 ~ 17432964 (-)
gpatch2 gpatch2,LOC102785715 other downstream 120265 16825652 ~ 16835983 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other downstream 438374 16490650 ~ 16517874 (-)
LOC120546332 akap7 other downstream 767918 16146590 ~ 16188330 (-)
LOC120546224 NA other downstream 887939 16065854 ~ 16068309 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other downstream 1160610 15788826 ~ 15795638 (-)
LOC120547341 NA other upstream 300992 17266359 ~ 17269634 (-)
tbpl1 tbpl1 other upstream 657757 17623124 ~ 17631351 (-)
zgc:153284 NA other upstream 799438 17764805 ~ 17766910 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other upstream 945903 17911270 ~ 17913036 (-)
LOC120546829 LOC104964434,LOC104922426,LOC103363570,LOC107377518 other upstream 1524448 18489815 ~ 18506198 (-)

Expression


Co-expression Network