cdc40 (cdc40,LOC103135076)


Basic Information

Item Value
gene id cdc40
gene name cdc40,LOC103135076
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19919473 ~ 19944031 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781451.1
TCCTGCTTCCGGCAAATTCACAACATCCAAGATGTCTGCCACCGTGGCTTCCCTCGTTTCGTACGGTAGCGATTCTGATTCAGAAAATGAGTCGAATTTGAATACAGATGTTGAGAAAGTGGACCTAGCGGACCCGGACACCATGGCTCACCTTAAACCTCTAAAGTCTGTACCCACGATGTCCGTGGCTGTTCTCAATTCTGCTCCCGAGGTCGCTGTTAAAGAGGCTGTTGAGACTGGTACACACCTGGacccttcattgaaagaagtcACCTACAACCCGACATTTGAGACCATGTTTGCACCAGAGTTTGGGCCAATAAACCCATTTAAAAGCCAGCAGATGGCTGCCCCCAGGAACATGTTATCTGGCTATGCAGAACCTGCTCACCTCAACGACTTCATGTTTGAACAGCAAAGGAGGACCTTCTCCACCTATGGTTATGCTTTAGATCCATCTGTTGACACACACCAGGTATCCTGTAGTAGCTACATTGGTGCAGTGGATGAGGCTGAGAAAAATAAAGGACTAACTGTGTTTGAGAGCGGACAGAAGAAGtcagagaaaaggaaaaagatcAAAGGTGGAGAAGCAGGAGAGATTGACAACTTCCTTGGACCATGGGCAAAATATATAGACGAGAAAGATGGGGCCAAACCGTCAGAGgaagaGCAGAAAGAGCTGGATGAGATCATAGCCAAGAGGCAGAAGAAGGGAAAGAACGAAGAAGATGCCCCTGCAGAAGAGAAGACTATTCTCCATGTTAAAGACATGTATGATTACCAGGGCAGGTCCTACCTCCATGTCCCACAGGATGTGGGCATCAACCTGCGTTCTGCAGATGCTCCCGACAAGTGTTACCTGCCTAAGAAACAGATTCATGTCTGGTCTGGACACACCAAGGGTGTCAGTGCTATCAGACTATTTCCTAGCTCTGGTCATCTACTGCTCTCCTCCTCCATGGACTGTAAGATCAAGCTGTGGGAAGTGTACGGCGAGAGGAGGTGTATACGCACATTTATTGGTCACAGCAAAGCAGTGCGAGACATTTGTTTCAACAACACTGGGACCCAGTTCCTCAGCGCTGCCTATGACCGCTACCTCAAACTCTGGGACACTGAGACAGGCCAGTGTATCTCCCGCTTCACCAACAGGAAGGTACCGTACTGCGTCAAGTTCAACCCAGACGAGGACAAACAGAGCCTTTTTGTGGCCGGCATGTCGGATAAGAAGATTGTTCAGTGGGACATCAGGACAGGCGAGGTGGTTCAGGAGTACGACCGTCACCTGGGAGCCGTCAACACCATCACCTTTGTGGATGAGAACCGTCGGTTTGTCAGCACGTCGGACGACAAGAGTCTTCGAGTTTGGGAGTGGGACATCCCTGTGGACTTCAAGTACATTGCCGAGCCTAGTATGCACTCTATGCCAGCTGTGACACTCTCTCCCAACGGTAAATGGCTAGCGTGCCAGTCTATGGACAACCAGATTCTGATCTTTGGAGCCCAAAACCGCTTTAgactgaacaagaagaaagttTTCAAAGGCCACATGGTGGCTGGCTATGCCTGCCAAGTGGATTTCTCCCCAGACATGAGCTATGTGGTGTCAGGAGATGCGGATGGAAAACTGAACATTTGGGATTGGAAGACCACCAAGCTTTACCACAGGATCAAGGCTCATGACAAGGTGTGCATCAGTGCGCTATGGCATCCGCATGAAACCTCCAAGGTTATCACCTGCGGTTGGGATGGACAAATCAAACTCTGGGACTAGATCTGttctggtgtgtgtttttggttggGGGTGGTCTGGGAAATGGTGGACCGACCCTAACTGGTTCACTATAGAGATACTGAAAGGGACTGCTTGTCCCATGGATTTTGTGAAAGCCACAGGACTGGTATCCAGTCTTATTGTAGCAGCGTATTTTTGTATCCTGTCACGAGAGTTCAAAGTATGTATTATCTGTACAAAGATGGCCACAAGCATACTTTTAAAAATAGTTTCTACTGCAAACGGAATATAAGAGGGGAACCttggcattttttaaatatcttttttttgttttaatttgcgattTGTGGAGTATACCTCTGTaatcattggtaaaaatgtctttcatttttaattgtgtAACCATCCCTTTGTGGAAATAAACATTCTGTAAATTTCA

Function

symbol description
cdc40 Predicted to act upstream of or within cell division and mRNA splicing, via spliceosome. Predicted to be part of catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human CDC40 (cell division cycle 40).

NR:

description
pre-mRNA-processing factor 17

GO: NA

KEGG:

id description
K12816 CDC40, PRP17; pre-mRNA-processing factor 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781451.1 True 2177 mRNA 0.47 15 19919473 19944031

Neighbor

gene id symbol gene type direction distance location
LOC120546286 gpr6,LOC104945012 coding upstream 82075 19834485 ~ 19837398 (+)
fig4a fig4,LOC102794534 coding upstream 88630 19745177 ~ 19830843 (+)
si:dkey-119f1.1 smc6 coding upstream 188249 19712664 ~ 19731224 (+)
LOC120546417 NA coding upstream 216082 19699722 ~ 19703391 (+)
si:ch211-225h24.2 tdrp coding upstream 321366 19584702 ~ 19598107 (+)
slc22a16 slc22a16 coding downstream 33833 19977864 ~ 19992886 (+)
LOC120546927 LOC104961664 coding downstream 673219 20617250 ~ 20622631 (+)
epm2a epm2a coding downstream 684810 20628841 ~ 20638714 (+)
LOC120547338 NA coding downstream 934449 20878480 ~ 20881587 (+)
mthfd1l mthfd1l coding downstream 947377 20891408 ~ 20928761 (+)
G185827 NA non-coding upstream 67762 19850174 ~ 19851711 (+)
G185804 NA non-coding upstream 180183 19739040 ~ 19739290 (+)
G185802 NA non-coding upstream 181209 19737994 ~ 19738264 (+)
G185800 ak9 non-coding upstream 183417 19735840 ~ 19736056 (+)
G185799 NA non-coding upstream 183749 19735518 ~ 19735724 (+)
G185869 mettl24 non-coding downstream 1062 19945093 ~ 19980090 (+)
LOC120546509 NA non-coding downstream 6580 19950611 ~ 19973343 (+)
LOC120546242 NA non-coding downstream 317754 20261785 ~ 20359609 (+)
LOC120546929 NA non-coding downstream 682517 20626548 ~ 20628265 (+)
G186025 NA non-coding downstream 749139 20693170 ~ 20702644 (+)
kif25 LOC104961976,LOC100703631 other upstream 59256 19852643 ~ 19860217 (+)
acp1 acp1 other upstream 271317 19633500 ~ 19648156 (+)
zgc:193593 NA other upstream 298690 19572573 ~ 19620783 (+)
nhsl1b nhsl1,LOC101470763 other upstream 377641 19429595 ~ 19541832 (+)
acbd3 acbd3,LOC102799892 other upstream 491984 19354616 ~ 19427489 (+)
gtf2h5 gtf2h5 other downstream 1226917 21170948 ~ 21172639 (+)
erh erh,LOC100699790,LOC101174968 other downstream 2000712 21944743 ~ 21947000 (+)
G186394 mycn,LOC108233328 other downstream 2041748 21985779 ~ 22065589 (+)
lin28b lin28b other downstream 2336936 22280967 ~ 22301585 (+)
kcns3b kcns3,LOC103372653 other downstream 2863848 22807879 ~ 22810520 (+)

Expression


Co-expression Network