ino80 (ino80)


Basic Information

Item Value
gene id ino80
gene name ino80
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15606068 ~ 15652295 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781456.1
CCGCTCGTGTCCGCAACAAGGGTGGGGTTTCCATCATTGATCATTAATCTTGGAATCAAGAACAATGGCTTTCCTTACTGAAAAGTGAAAGTTGCTGCCCTGCTGGGCAGAGGTGTCTGTGCTGCATGGCGTCAGGGCAGGGTGGCCGACTGGAGGCTGGGGCATCAGGGAGCTCTGGCCTGGCCAAACCTCTCTACCTGCAGCGCTTGGAAAGATCCCTGAGGTTGGACAGCTTCCTGCGCCAGACTGCTGCCATCTTCAACGGAGACATAACCACAAGTGATGACAGTGATGACAGCGATGGTGCATTGGGGACAGCGCTATCCATGGACCCCTCCGCCACTCAGCATACAGCTTTGACCGTGAAAAGTGAGCCATGTGAGCAAGAGGACTGCTTGTCAGAGGGCAAGCCCCTCAATGGAATTCTGCTGCAGGGTGAAGCAGACCAGAAGGCAGATAAAGCCAGCCTCTACAATTTCTCCAAGCTGAAGAAGAACAGAAAGTGGCTTAAGAGTATCCTGTTGAGTGACGACACCACAGACTCGGACACAGACTCGGATGACTCGGACTTCAGTTTATCTCGGGAGGAGCTGCATGACATGCTCAGGCTACATCGCTACACCAGGCAGCATCAGAGCAAGTTCCACTCTGACCGGGAgCTTCACCAATATCAGTACTACAGCACTGGACTCCTCTCTACTCATGACCACTTCTATGAGCAACAGCGCCACCTACTGGGgccgaagaagaagaaaatcaaagatGAGAAGAAATTCAAggccAAATTGAAAAAggtgaagaaaaagaagaaacggGGAGAGGGAGAGTTTCTGGATGATGGGCGTCCTTATATCACCAAGATCTTCGCTAAGTTTTCCCATGATGCTCCGCTGCCCATAGTGAAGAAGAAACATCTCACTACTGAGCAGCTGAATGCACGGCGGCGTAAGGTCTGGCTCACCATCTCTAAAAAGGAGATTCCCAAGTCTTTCAAGCAGAAGACCTCTGCTAAGAACTTAGTATTGACCAATACTAAaaagTTGGCTCATCAGTGCATGAGGGAGGTTCGGCGTGCAGCTATCCAGGCCCAGAAGAACTGTAAGGAGACGTTACCCCGGGCTCGCCGCCTCACCAAGGAGATGATGCTTTACTGGAAGAAATATGACAAAGTGGAGAAGGAGCACAGGAAGAGGGCAGAGAAGGAGGCCCTGGAGCAACGTAAACTGGACGAAGAGATGAGAGAAGCCAAGCGTCAGCAGCGTAAACTGAATTTCCTCATCACCCAGACAGAGCTGTATGCTCATTTCATGGGCGGTAAAGCCAGCATGGGGGGTCCAGCAGGAGGTACGTCTCAGGAGGAAATTCTGAGCAAGCTGGAAGACACTGGGGCACACAGACAGATTGACATTGGAGGCGGTGTAATGGTCAACATGGGACAGGAGGACTATGATAGTGATTACTACAAGTCCCAGGCCTTGAGGAATGCCAAAGAAGCCTACCAGATTCATCAAGAGAGAACGCGAATGTTTGATGAGGAGGCTAAGGACAGTCGCTGTGCGTCGCTCCACTCAGCAGTGGGCTCTTCCTCAGGCGCCGGCTCTGGGTTTGGAGAGAGCTACAGCCTCTCTAACCCGTCCATCCATGCAGGTGAAGACATTCCTCAGCCCACTATCTTCAACGGCAAACTCAAGGGTTACCAACTCAAGGGCATGAACTGGCTGGCCAACCTCTATGAACAGGGAATCAATGGAATCCTGGCAGATGAGATGGGGCTGGGGAAGACAGTCCAGAGTATCGCCCTGTTGGCACACTTGGCAGAGAGAGACAACATCTGGGGTCCGTTCCTGATCATCTCTCCCGCATCCACACTCAACAACTGGCATCAGGAGTTCACCCGCTTTGTGCCCAAATTCAAGGTGTTGCCATACTGGGGGAATCCACACGATCGCAAGGTGATTCGGAAATTTTGGAGCCAgAAAACCCTTTACACCCAAAATGCACCATTCCACGTGGTGATCACAAGCTATCAGCTGGTGGTCCAGGACGTCAAGTACTTTCAGAGGGTCAAGTGGCAGTACATGGTTCTGGATGAGGCCCAGGCACTGAAGAGCAGCACTAGtgttcGGTGGAAAATCCTTCTGCAATTCCAGTGTCGAAACAGACTGCTGCTCACCGGGACGCCCATCCAGAACACGATGGCtgagCTGTGGGCCCTGCTGCACTTCATCATGCCTACATTGTTCGATTCCCATGAAGAGTTTAACGAGTGGTTCTCCAAGGACATCGAGAGCCACGCCGAAAACAAGTCTGCCATTGACGAGAACCAACTTTCCAGACTGCACATGATCCTCAAGCCTTTCATGCTGCGCAGAATCAAGAAGGATGTGGAAAACGAGCTCTCGGACAAGATTGAGATCCTGACCTACTGCCAGCTGACGTCCCGGCAGAGGTTGCTCTACCAGGCTCTGAGGAACAAGATCTCCATCGAGGATCTGCTGCAGTCGTCCATGGGCACGGCCCAGCAGTCCCACAGCACCACCTCCTCCCTCATGAACCTGGTCATGCAGTTCAGGAAGGTGTGTAACCACCCTGACTTGTTTGAGCGCCAGGAGACGCGCTCTCCTTTCCACATGTCCCTTAAGCCCTACGACATGTCTAAGTTCCTCCACCGCCATGGCCTCATCCACGCACGCAACCAGGCCAAAAAAAAATTACTTCAAGTGCTGTTGTCTCCCTTCTCTCCATATCACATCCAGCAGTCTCTTTTCCACAGAAAAGGTGATGACAAAGGAAGCTGTTTCTCCTTCCTGCGCTTCATCGATGTGTCACCGGCTGAGATGTCCAATCTCATGCTGCAAGGCACCTTAGTAAGATGGTTAGCCCTTTTTTTGTCCCTCAAAGCTGCATATCGGCTCCACCATCAGCGCCTGTTTGGCCTTGAAGAAGAGGGTCCGGAGGAAGCCAGACCCTTGCGGGGGGAGAGCGGGAGGTTACAGCCCAGGAGTAAGTGTCTGTCTCGCAATGACCTAATTCTGTGGCTGAACAGACCCACCAATTTCCCCAACACAAACACCAGCCCCGTTCTACAGgacCTGGTGTTCACAGCCTTAAGACCCGGCATGATGGGACACACAGACGTGATGATCTATAGTCGAAACTCTGCCACCTCCACGCTGCGACCCTGCCAACCTACACTGCCACCCAAGTTCCTGCTAGCCGCCACACccaggGTGACAGCAGTTCCGATGGAGTGCTATTGTAACGACCGCAGTGCAGAGTACGAGTGGCGGGTGACACGCAGTGGAGGGGGCACAGTCTTtaaacagtgtttcctctatggcTCCCCCGAACTTGCCTCAGACTGGCGCGCGAGGGCCAATGCCTTTCACCCACAATGCCATGGGGGTGTGATGGCCCTCTACCCGCGACATGGATGGTCCTTCATTCGGATCCCTGATAAGGAGAGCCTGATCACTGAAAGTGGCAAGCTCCACACCTTGGATATCCTGTTGAGTCGGCTAAAGGCCCAGGGACACAGAGTCCTCATCTACTCCCAAATGACCCGCATGATAGACCTGCTGgagGAGTACATGGTTTATCGTAAGCACACCTACATGCGCCTCGACGGCTCCTCCAAGATTTCGGAGCGCAGAGACATGGTGGCTGACTTCCAGAGCCGGACGGACATCTTTGTTTTCCTGCTGAGTACGAGGGCTGGAGGGCTCGGCATTAACCTGACCGCTGCGGACACTGTCATCTTCTATGACAGTGACTGGAACCCCACAGTGGACCAGCAGGCCATGGACCGAGCTCACCGGCTGGGTCAGACCAAGCAGGTCACCGTCTATCGCCTCATCTGTCAGGGATCCATCGAGGAGAGGATCCTGCAGCGGGCCAAGGAGAAAAGCGAGATCCAAAGGGTGGTGATCTCTGGAGGCAACTTCAAACCAGACACACTCAAACCCAAAGAGGTGGTCAGCCTGCTGCTGGACGACGATGAGCTGGAGAAGAAATTGCGTCAGAGACAGGAGGAGAAGAGGCAGCTGGAAGAGTGCAGCAAGGTGAAAGAGCgcaagaggaagagggagaagtACGCAGAGAAGcagcagaagaagaacaACGAGGAGTCCGAGGTCAAGAAGAAGAGGGAGGTGAACCTGGTCATCTCTCATGCGCCCTCGGCAGACAACTCCAACCTCTCTGCCGACGGAGACGACTCCTTTATCAGCGTCGAGATGGACTCGGCCATGCCCAGTCCCTTTAGTGAGATCTCCCTGAGCAGCGAGCTCCAGCCCGGCTCGTTGCCCCCGGATGCCGACGCCGACGAGAGCAGCAGCGACATGCTGGTCATCGTGGACGATCCGGTGTCCTCTGCGCCGCAGTCTCGCGCCACCAACTCGCCCTCCTCGGTGTCTGGATCAGTCTCTGACAACATGAACGgTGTTTCGGCCTCGGAAACGATCAGTCCCGGCAGAGGCAGGTCTGGGCGGAGTCGGGGGCGGCCTAAAGGATCAGGAGGGGGGGCCAAGTCTGGAGGGAAAGGACGTGGCCGCAAGTCAACAGCGGGCAGTGCGGCAGCCATGGCGGGAGCGATGGCTGGTGCGGCCGCAGCGTCTGCAGCAGCGTATGCTGCTTACGGTTACAGTGTTTCTAAAGCAGGCCTCGCTGCGTCCAGCCCCCTGCAGCCTTCCCTGGGCCGGTCTGGCACCAGCCCCGCCTTCAACCCCAGCAGAAGCTCCTCCCCCCAGGCCAAAGGAGGCGCCTCCACCCCGAGCCCCAACAAACAGCTGGCCCACAGCCACCACCACAGCGGCCACGGCACAGTCAGGAAAGGCAAGGGCCCCGGTGGTCCCGGGGCTCGATAATGGACTCGTACACACTTGAAtgtgccctctctctctctctctctctctctcgctcacactcactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaaaactgaCCTTCTCTCACTGTGATCCCCACAGACGCCCTACGCCTAAACTAATAGGGATTACAGTACATATAGTAACAGAGGCTCACTACCTGGAGGACCATGCTGTGTCTGCTGGTTCAGCAACTAAAAGGACtgtcttctcacacacacacacacacacacacacacacacacacacacacacgcacacacttgaAGGTACAGTCCCTACCAGCCTCTACATTTCTTGGTCCcgttttattttaatgtgtccGGGTCAGTGGACAAAATCTGCCTTGAGTATTTTTGTTTGCATTGTGACAAGAGTATTTCCAAGTGCTTTTTGAGAAGACGGACCGTACTTTTTTATTCACGATGACCGGAAACTCTTTTGATTTGCTACCTAGCTATGATGTTACAACAAAGACGTGAGCCAACACATGTAGCTTAAAGGGCTTTGAAATGTTTGCCAGTTTAGGGAGGCAAAGGAGTTTCTGTCAAATGCACTGAGCCACGTCTtccgttttattttttgttttttttttggtgttattgATTCCCATACTTGTACATTAGGTTATTTAATTGTCCTGTAGATGTGCTTGGCGCAAACTGGTGGACAGTTCTGCATTTCACAGAGCTTAATGTGAACCCACACCTTACCGACCCACACTTTACCAAACAATACGTCTACAGCTTTTCTACTAAAGCTCCTATTTTTGTAATAAAAGATGCCAGTACCCATACCAAACATGGCAAGTcttaacattttgaaaaatatttgTCCATGAAATGTATTTCCCGTGCAGACGGAAATGTAAATCGATGATATATTTTTTGTCCAATgggaaaatgaatgaatggttGATGTGAACATGATAATTCAAAATTAGGGGTACTGGTGGATCCGGCTATGCTGCTAACCGTAAATTTATGAATTCACTCAGATTATTTGGTTGTCTATATTTAAGTTATTTGAGTTGTGTTAAAATGGGCAATTGATGATAATTGTGAACGGGGTATTCAGCTGTAAAACAGTGTAAATTGTACTGaagccatttttatttttcagaaattgttttttttttttgtgatgagGAGTCTGTGGTTCTCTTTGATGTCATTGATGttttaggaagaaaaaaaaaagtttgcatcAGTGTCCTAAGTTGAGCACTACGTCTGTTATAGGTTGGTTTTGTGttatagtgtgattaaaatATGATGTTCTATATTGATGTACATAATGATGAGAGTGACATTTCCTCTGGCTTTTCCCTCATTTGCCTGTCTATTTTTATAGGTCATGTGTACATATGAAGAAAATGCATCTGCCATTTTACTAACAGGAGGAGCCGACTGAAAATAAAAGAGTGCTAAATTA

Function

symbol description
ino80 Predicted to enable ATP hydrolysis activity and histone binding activity. Predicted to be involved in DNA repair; chromatin remodeling; and regulation of transcription from RNA polymerase II promoter in response to stress. Predicted to act upstream of or within cellular response to DNA damage stimulus; chromatin remodeling; and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Orthologous to human INO80 (INO80 complex ATPase subunit).

NR:

description
PREDICTED: DNA helicase INO80

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K11665 INO80, INOC1; chromatin-remodeling ATPase INO80

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781456.1 True 6377 mRNA 0.51 38 15606068 15652295

Neighbor

gene id symbol gene type direction distance location
syndig1l LOC108231752,LOC106536771 coding downstream 221481 15347760 ~ 15384587 (-)
slc25a47a slc25a47 coding downstream 329489 15272178 ~ 15276579 (-)
LOC120546952 LOC103369945,LOC104955612 coding downstream 404978 15199429 ~ 15201090 (-)
wdr20b wdr20,LOC104961916,LOC103369949,LOC101068631,LOC101475300,LOC102799324,LOC101173269 coding downstream 477575 15121829 ~ 15128493 (-)
LOC120546409 mdga2 coding downstream 676406 14792113 ~ 14929662 (-)
vps18 vps18 coding upstream 1607 15653902 ~ 15659491 (-)
pigh pigh,LOC102778419 coding upstream 25575 15677870 ~ 15680252 (-)
wdr21 dcaf4 coding upstream 36223 15688518 ~ 15694621 (-)
LOC120546258 NA coding upstream 68134 15720429 ~ 15723341 (-)
chga NA coding upstream 125128 15777423 ~ 15785606 (-)
G184452 LOC103369942,LOC106518591 non-coding downstream 317183 15283249 ~ 15288885 (-)
G184420 NA non-coding downstream 431949 15173711 ~ 15174119 (-)
G184417 LOC101473650,LOC102776111,LOC103369946,LOC102310296 non-coding downstream 432428 15169136 ~ 15173640 (-)
G184404 LOC103369948,LOC101169258 non-coding downstream 467353 15132217 ~ 15138715 (-)
LOC120546341 NA non-coding upstream 44205 15696500 ~ 15700999 (-)
G184662 stx7 non-coding upstream 82123 15734418 ~ 15735282 (-)
G184668 ctgf non-coding upstream 120391 15772686 ~ 15775486 (-)
G184696 NA non-coding upstream 360205 16012500 ~ 16015535 (-)
G184699 LOC107390449 non-coding upstream 372923 16025218 ~ 16033730 (-)
rps29 NA other downstream 494589 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 938467 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 993122 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 1107698 14472201 ~ 14498370 (-)
mfsd2b mfsd2b other downstream 2114925 13473683 ~ 13491143 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 136531 15788826 ~ 15795638 (-)
LOC120546224 NA other upstream 413559 16065854 ~ 16068309 (-)
LOC120546332 akap7 other upstream 494295 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 838355 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 1173357 16825652 ~ 16835983 (-)

Expression


Co-expression Network