vps18 (vps18)


Basic Information

Item Value
gene id vps18
gene name vps18
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15653902 ~ 15659491 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781457.1
TGATTCCGTGTGTCACCTGATTATCCGTGTCCACCCTGTGTTGTGTAGTCGGAAGCTAAGCTAGCTGTTATGATAGCATGAATGACTGACATTTCATATATTCACGTTGACTGCAGCGTAATATATTATACTTCAGCTCCTGCTTCTGAATGTAGACCCATGTGGAGAGAGGAAGTACGCTCGCGTGCCCTTAACCGGTAGAAGTtgttttagctagctaacgttagctgtttagtCATGGCGTCATAGGATTGTTTCTTCGCCAGTCATTATAGCTATATGTAGAGCATTCATTTACAGTTAGTCGAATAAGGTGGGACTGTACAATCGTAGAACCATGGCTTCAATTCTTGATGAGTACGAGGACTCGCAGAACACCAGGCAAAGTGCGCAGCAGCACAGCCGCTTGTCAACAGCCAACATCGGCATAACACATTCAGGTTTTGTGAATGTGAGACTTGAGGAAGAGAAACCGATATTCAACAAGCAGAGGATCGATTTTACACCGCCTGAGAGGATAAACCACCTTGTTGTCTGCAACAATCAGCTATGCATGAGTCTGGGAAAGGACACCCTGCTGAGgattgattTGGCCAAGCCAGATCAGCCTAATCAGATTGAACTGGGAAGGAAAGATGAAAGTAAAGTGCACAGACTGTTCCTGGACCCCACCGGCTCCCATCTGCTGATCTGCCTGAGCACCAGTGAGTGTCTGTACCTTAACAGGAACACGCAGAAGGTGCGCAGTCTGTCCCGCTGGAGAGGCCACCTCATCGAGAGCGTGGGCTGGAACAAGCTGCTGGGCAATGAGACCATCACGGGACCCATCCTGGTTGGCACAAGTCAAGGCATTATCTTTGAGGCTGAGATCTCTGCCACTGAAGGCAGCCTGTTCAACACCAATCCTGATCAATACTTCAGACAGGTCCACTCTGTGGATGAGGATGGGAAGCCAGCACCAGTCTGCTGCCTGGAGGTGGAGCGGGGCCTGGAGAACAAGTACTTCATCATCGCCACCACCCGCAAACGCCTGTTCCAGTTTGTGGGTAAGGTGGCTGAGGGGTCAGAGCAGCAAGGCTTCAGCTCCATCTTCAGCCAGAACCAGGACCTGCTGCCCAGTTTCCAGGAGTTCCCAGCCAACATGGGCTACAGCGAGATCACCTTCTACACCTCCAAGCTCCGAACCTGCCCTAAGGCGTTCGCCTGGATGATGGGTAATGGAGTTCTTTATGGTCAGCTGGACTATGTCAGGCCTGATTCCCTGCTGAGTGATGTGCAGGTATGGGACTACACCCCGGACATTGACCTTAGTCTCAACAAGCCCATCTCCATTGTGCTGACGCAGTTCCActttctgctgctgctccatGACCGAGTGAAGGCCATCTGCACTCTGAACGGACAGGTGGTATATGAGGATGTGTTCCCAGATAAATTTGGCGCCCTTAAGAAGATGATCAAGGACCCAGTTGGTGGGTTGGTGTGGATCTACACTGAGAGGGCAGTTTTCCGGTACCACATCCAGCGCGAGTCCAGGGACGTGTGGCAGATGTACATGAGCATGACTAAATTTGACCTGGCCAAGGAGTACTGCCGTGACCGGCCGGAGTGCATGGACATGGTGCTGGCCAAGGAGGCGGAGCACTGCTTCCAGAACAAGCGATACCTTGAGAGTGCCAAGTGCTATGCGCTGACACAGAACTACTTTGAAGAGATAGCGCTCAAGTTCATCGAAGCCAAACAAGAGGAAGCCCTAAAGGAGTTCTTACTGAAGAAACTGAATAATTTGAAACCGAGTGAGAGAACGCAGATCACCTTGCTGGTCACCTGGCTAGCCGAGCTCTACCTTAATCGGCTCGGCCAGCTGGAGAGCGATGGTAACAGCGTCATCTTACAGGAGACCCGCGATGAGTTTCGCCAATTCCTCAGCAGCGCCAAGCATAAGGACTGCTTGTTCAACAACCGCAGCACCATCTACGACCTGCTGGCCAGCCACGGCAACGTGGACGACATGGTTTACTTCTCAGTCGTCATGCAGGACTATGAGAGAGTCATATCCCACTACTGCCAACATGACGATTACAGCGCTGCCCTGGACGTGCTTTCCAAGCACTGTGACGAAAAGCTTTTTTACAAGTTCTCTCCCGTCCTCATGCAGCACATTCCCAAAAAAGTGGTCGATGCGTGGATTCAAATGGGCAAGCGGCTGGACCCGAAGAAGCTCATCCCAGCTCTGATGAACTACAGCCAGATGGGCAGCACCCAGCAGATCAGTGAAACCATCCGCTACATGGAGTTCTGTGTGTACGAGCTGACCGTGACAGAGGAGGCCATCCATAATTACCTGCTGTCACTCTATGCCAAGTACAAGCCGGACTCTCTGCTGTGGTATCTGGAGCAGGCAGGTACACACGCCTCAGAGATCCACTATGACCTGAAGTACGCCCTCAGGCTGTGTGCAGAAAATGGCTACCTCCGGGCCTGTGTCCTGGTTTATAGGATTATGGAACTGTATGAGGAGGCAGTGGATCTTGCTTTACAAGTAGACGTAGACTTGGCCAAGTCATGTGCGGACCTGCCTGAAGATGACGAGGAGCTGAGGAAAAAGCTTTGGCTGAAGATCGCCCGGCATGTCGTGCAGGAGGAAAAAGATGTGAAGAAAGCCATGAACTGTCTGTCCAGCTGCAACCTGCTCAAGATCGAAGACATCCTGCCCTTCTTCCCAGACTTTGTCACCATTGACCATTTTAAGGAGGCCATCTGCAGCTCCCTGGAGGAGTACAACCAGCACATCGAGGAGCTGAAGCAGGAAATGGAGGAGGCCACGGAGAGCGCCAAACGCATCAGAGAAGACATCCAGGAAATGAGGAACAAATATGGCGTAGTGGATTCCCAAGAAAAGTGTGCTTCTTGTGACTTCCCATTGCTCAACAGGCCCTTCTATCTGTTCCTATGTGGACACATGTTCCACTATGACTGCCTGTTCCAGGAGGTGACCCCTCACCTGACGGTCTATAAGCAGAGTCGtctggaggagctgcagaaaaAGCTGGCCGCAACCACGCAATCGTCCAAGTCACGCCACCGCCCGGCACCCAAGGACGAAGGAGACACTTCCAGCCTGGGAAAGGGCAATGCAGGCACAAGCCGCGAGCAGATAAAATCAGACATGGATGACATCATTGCATCTGAATGCGTGTACTGCGGCGAACTGATGATCAAGTCCATCGACAAGCCTTTCATTGATCCACAGAAATTTGAGGATGAAAAATCCAGCTGGCTATGAATGAGGCCTCTCAATGTGAAAAGACACAAGATGAGCCCATCAtcttatactgtatgtcaatgaAAACTGCACCATCCGTAGGACTGACCCATTCAGTGGATACATACATTCTCCCGATTACCTGTTGGTAGTGCCTACTTTGAAAAATGTATCCGCTTCAGTTGCTCTCTACAGAATACCCTTTTTTTGTTGGCAGTATTTGAAGCTGAGTTAAAGACCTTTGCACTTTGTATGGAAGCATCTAGTGAAAGGTGGACATTGTGGGCAATGATAAAAGATGATGTGGTGATGTAAAATATTGGCAGGGTCTTAAAAGTGCATACAATGTGCctgaactagggctgcacaatataaggaaaatatgcaataacattgttgaatatcgcgataatgaTATTACATGCGATACATTCtaatgataaataaacagatattaaagtgta

Function

symbol description
vps18 Predicted to enable protein-macromolecule adaptor activity. Acts upstream of or within several processes, including apical protein localization; endosome to pigment granule transport; and notochord cell vacuolation. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be part of HOPS complex. Predicted to be active in endosome. Used to study cholestasis. Orthologous to human VPS18 (VPS18 core subunit of CORVET and HOPS complexes).

NR:

description
vacuolar protein sorting-associated protein 18 homolog

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0045176 apical protein localization biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007634 optokinetic behavior biological_process
GO:0043485 endosome to pigment granule transport biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0015721 bile acid and bile salt transport biological_process
GO:0048069 eye pigmentation biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20181 VPS18, PEP3; vacuolar protein sorting-associated protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781457.1 True 3729 mRNA 0.50 9 15653902 15659491

Neighbor

gene id symbol gene type direction distance location
ino80 ino80 coding downstream 1607 15606068 ~ 15652295 (-)
syndig1l LOC108231752,LOC106536771 coding downstream 269315 15347760 ~ 15384587 (-)
slc25a47a slc25a47 coding downstream 377323 15272178 ~ 15276579 (-)
LOC120546952 LOC103369945,LOC104955612 coding downstream 452812 15199429 ~ 15201090 (-)
wdr20b wdr20,LOC104961916,LOC103369949,LOC101068631,LOC101475300,LOC102799324,LOC101173269 coding downstream 525409 15121829 ~ 15128493 (-)
pigh pigh,LOC102778419 coding upstream 18379 15677870 ~ 15680252 (-)
wdr21 dcaf4 coding upstream 29027 15688518 ~ 15694621 (-)
LOC120546258 NA coding upstream 60938 15720429 ~ 15723341 (-)
chga NA coding upstream 117932 15777423 ~ 15785606 (-)
sel1l sel1l coding upstream 136280 15795771 ~ 15806849 (-)
G184452 LOC103369942,LOC106518591 non-coding downstream 365017 15283249 ~ 15288885 (-)
G184420 NA non-coding downstream 479783 15173711 ~ 15174119 (-)
G184417 LOC101473650,LOC102776111,LOC103369946,LOC102310296 non-coding downstream 480262 15169136 ~ 15173640 (-)
G184404 LOC103369948,LOC101169258 non-coding downstream 515187 15132217 ~ 15138715 (-)
LOC120546341 NA non-coding upstream 37009 15696500 ~ 15700999 (-)
G184662 stx7 non-coding upstream 74927 15734418 ~ 15735282 (-)
G184668 ctgf non-coding upstream 113195 15772686 ~ 15775486 (-)
G184696 NA non-coding upstream 353009 16012500 ~ 16015535 (-)
G184699 LOC107390449 non-coding upstream 365727 16025218 ~ 16033730 (-)
rps29 NA other downstream 542423 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 986301 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 1040956 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 1155532 14472201 ~ 14498370 (-)
mfsd2b mfsd2b other downstream 2162759 13473683 ~ 13491143 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 129335 15788826 ~ 15795638 (-)
LOC120546224 NA other upstream 406363 16065854 ~ 16068309 (-)
LOC120546332 akap7 other upstream 487099 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 831159 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 1166161 16825652 ~ 16835983 (-)

Expression


Co-expression Network