chrna2b (LOC104964447,LOC101470861)


Basic Information

Item Value
gene id chrna2b
gene name LOC104964447,LOC101470861
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18283900 ~ 18293835 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781471.1
TTCTCACAGTGGATGATGCGGTTTTGCGGACCTAATAGACCAAAGTGGTCACTAAAAATGCTTCTAATTATGGAATAGAgctaatttaacattttaaatggtTATCGAAGTCTTAGATTAGGTCACAAAAGGATGCGTAAATTGGCACCGTGCGTAAAAGGGTGGAATTTGTTTGGATAATATATAGACAGCAACAAACCGGACTATTTTCCGTAAATTAATTTCTTGATACCGGATTTGTATAGGCAGTATTGAACTGGCACTTTAATCTGAAAATACACCAGAGGTAAGGTACGGCGTTACAGTGCCGCTGCCCGTTTCAGCACCGGATCATGGCTCACGGACACAGTGCGCGGACAGGCTTTTGGAGCGCGGAAACAAGAGGTGCATAATTACTCGCTCTCATTCAGTCTAAGCAGGGCTAAAGTGTGAAGAGTGACACACATACCCACTGTTGCAGAGTTTTAGGGAAAAGACAGTAAAGTTATTCATACAGAGTATTGTCCCCGCCCACAGATGTAAACGGGCTATAGCCTACAGTATGGTGAAGTTGTCCTGATATGACTCCCAACTGCGAAGATGACAGATTTTGCTCACAAATCACGATTTCAAGGTAACGTTTTGACAGCGGACGTAAACACCTCCGTGCTCTCCAGTGAAGTTGGACTCATTTTAAGCAGAGTCGAAAATGGGACAAAACAACCACCTGTTCTCTGTGAGGACGGCTATTCTCTGCTCGCTACTCTTGTGTCAGTCAGTTCTTTGTCATGAAAAGACCCACTCGCACGCTGAGGACGAGCTCTTCAAGACGCTGTTCGCTGGTTACAACAAGTGGTCGAGACCCGTGCCAAACATCTCTGACGTGGTCATTGTCAAATTCGGACTGTCCATAGCACAGCTCATTGATGTGgATGAGAAGAACCAAATGATGACAACCAATGTGTGGCTTAAACAGGAGTGGAATGACTACAAACTTCGCTGGAAACCATCCGACTATGATAATGTAACGTCCATAAGAGTGCCGTCAGAGCTCATATGGGTACCAGACATCGTCCTCTACAATAACGCTGACGGTGAGTTTGCTGTGACCCATATGACGAAAGCTCACCTATTCCACAACGGTAAAGTCCGCTGGGTCCCTCCTGCCATTTACAAGAGCTCCTGCAGCATCGACGTCACCTTCTTCCCCTTTGATCAACAGAACTGTAAAATGAAATTTGGCTCCTGGACGTACGACAAGGCCAAGATCGACCTGGAACGAACTGAAAACGTGGACCTGAACAACTACTGGGAGAGCGGCGAATGGGCCATCATCAACGCGGTGGGGACATACAATACAAAGAAATACGACTGCTGCCATGAGATCTACCCAGACATCACCTATTTTTTCATCATTCGAAGGCTTCCCTTGTTTTACACCATCAACCTCATCATCCCCTGTTTGTTGATCTCTTGCCTCACTGTTCTGGTTTTCTATCTACCCTCAGACTGTGGCGAGAAGATCACCCTGTGCATCTCTGTGCTGCTGTCCCTCACTGTTTTCCTTCTCCTCATCACTGAGATCATACCGTCCACATCCCTCGTCATCCCGCTCATCGGCGAGTACCTCCTCTTCACTATGATTTTCGTCACCCTCTCCATCGTCATCACTGTCTTTGTGCTCAACGTGCACCATCGCTCTCCAAGCACTCACAAGATGCCCCGCTGGGTCCACTTCGTGTTCCTGGACCTGATCCCACGCTGGCTGTTCATGCGACGGCCTGCGCCAGACGGCCGGCGTCACaggctgttgctgctgcagcaggAAGCAGCGGTGGAGCGGGGGCACGGCCGGATTGCCGGGTACAAATCTGGCAAGTGCCTCAGCACCTCTGTGAACTGGTTAAGAGATGGGACCACGACAGAAGACCCTCTGAGAAGCTCTTTTGAGGATTTAGAGCTGGGAACACTGACGTCATATTTCTCCTTCCGCCCTCCTTCGCCCAGACCACCAGGGTCGACTCCCCCACCACAACAGAAAACCCCACAGAACAGCCAGAACAGACAGGAGGGGGCTACAGTGACCAACAGACATTTAACAGGGGCCCGAGTTAATCCCACTCAGAGGCCAACTAAAATTGATAATACAGTATCAGACTCAACAATCCTGCTTTCACCAAATGTGTTACGTGCTCTGGAAGGGGTGCACTACATTGCAGACCATCTGAGGGCAGAGGATGCAGATTTCAGCGTGAAAGAGGATTGGAAGTATGTTGCCATGGTGATTGACCGCATCTTCCTGTGGATGTTCATTATTGTGTGCCTGCTTGGGACCATTGGCCTCTTCCTACCCCCTTGGCTAGCTGGCATGATCTAGCTCTTGTGAGAAGGTGTGAAAAATCCATAACCACCACTAGTTAGTGAAGTCTGACATTCACCATGTAGCTAAACTCTACTTCAGGACTCGGAATGTGACAAGTTTATGTAATATTGCTGCGTTAATGGCCTCATGAGGCTATGTTGCTCTTTTCACACCACCAAAAAGTTTGCTAATTTTAGATCCTTATAAAACTAGTGTGGCCATTTTGGCTCATCACTTGGATCAACCTTCATCTGTCTAAACTTTATCAGCCTCAGGTGAACTTCCCCTGCCTCAGCTGTAATGTGTCAGGTTTGACCtgaatgctaacattagcatgttaacaAGCCCAGGGTTGGAAATTGTTACATGCTAATGCTTAGCACAATGTAAGATTTGGCATTTTAGCATACAAATGTTAGTATGTTAACGTGCCAATGTTTAGTATATTGTCTCTTTAGCATGTTAGTTATCGTAACACGTTAGTTAAATAGCATGGCACCAGCATCAGTGTTGGGAATGGTGTTACAGTAATGTTATCACTTCTGTTGTTTGAGGAATTACAATTTAATATTCAGTTACCTAATTACATTTACTAGTAACGCTGGGATCAGTAACGCCATGGGTCTAGCTGTTAATGGACAGTAGCTAAATGGCTGCAATGGCTCGACTGGCTGCTCCACAAAGTGTGCAGGTGTGGCGGCTTTAGAGTCTAGGAACAAGAAATGTAACTAACTTAACTGCTAGTGTTTGGATACTAGTAAAGTAatgtgacttttcttttttcaattaCCAATAAGAAATCCCTTTCATTACATTTTCCAAGTAACTTGCCCACGTTGGTCAGCAGGTCTAAGCATACAGCTAATGCTGACAGGAATTCCCTCAGTACTTAGAGGTATCCAGTCATGACCTGGAATGTCAAGTGGAAACTTGGTGATTTTTGTTGAGAATAGTAAAGGTATAACCAAAGTCATTATGAATCATCATCTGGGGAATATTAATGAACCATGGCAAGCCATCCAAGTTGTCAATGTCATTCAAATGTTGGACTGACAGTGACATATGTTTCTcaactttctttgtttttgaccATCAGTGGCATGCTGTACTGGGAGTCTATAATATATTAGACACACTAACTGGGGTAATTTTTTGCTGGTTTGGGAATCATTTCTTACTTGTTTCAGATTTTTCTTTCTAGCCATGCTGCCATATAATTACAATGATTTTTGAATGATCATATTATGTAATAAATACCCTCATGAAA

Function

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-2-like isoform X1

GO: NA

KEGG:

id description
K04804 CHRNA2; nicotinic acetylcholine receptor alpha-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781471.1 True 3608 mRNA 0.45 6 18283900 18293835

Neighbor

gene id symbol gene type direction distance location
si:ch211-142k18.1 LOC104964445 coding upstream 1198 18273829 ~ 18282702 (+)
nme6 nme6 coding upstream 85397 18194483 ~ 18198503 (+)
atraid atraid coding upstream 106796 18173169 ~ 18177104 (+)
blk blk,LOC102291483,LOC102797075 coding upstream 271949 18002070 ~ 18011951 (+)
LOC120546768 NA coding upstream 289902 17976113 ~ 17993998 (+)
LOC120547097 LOC104922430,LOC103363566,LOC104964450 coding downstream 53401 18347236 ~ 18358913 (+)
zc3h14 zc3h14 coding downstream 108237 18402072 ~ 18409077 (+)
batf batf coding downstream 120177 18414012 ~ 18419160 (+)
flvcr2b LOC104964435,LOC107377514,LOC101468256,LOC103363569,LOC108242486,LOC100710273 coding downstream 125821 18419656 ~ 18442262 (+)
LOC120546828 LOC103363571,LOC107377519,LOC101067486,LOC106919680 coding downstream 207156 18500991 ~ 18581123 (+)
G185323 NA non-coding upstream 101917 18181132 ~ 18181983 (+)
LOC120546825 NA non-coding upstream 119246 18155970 ~ 18164654 (+)
G185258 LOC104959833,LOC107082730,LOC103138645,LOC106923247,LOC106920026 non-coding upstream 178996 18103025 ~ 18104904 (+)
G185254 NA non-coding upstream 224533 18057411 ~ 18059367 (+)
G185156 NA non-coding upstream 519108 17763969 ~ 17764792 (+)
G185353 NA non-coding downstream 4028 18297863 ~ 18298151 (+)
G185354 NA non-coding downstream 5478 18299313 ~ 18300098 (+)
G185356 NA non-coding downstream 8345 18302180 ~ 18302519 (+)
G185357 NA non-coding downstream 8863 18302698 ~ 18302965 (+)
G185359 NA non-coding downstream 11419 18305254 ~ 18305577 (+)
znf513a znf513,LOC102795572 other upstream 143640 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 228974 18020956 ~ 18054926 (+)
G185237 NA other upstream 366652 17916853 ~ 17917248 (+)
LOC120546940 NA other upstream 590266 17674393 ~ 17693634 (+)
G185145 LOC108242497,LOC106926748,LOC106945794 other upstream 597502 17669172 ~ 17686398 (+)
ylpm1 ylpm1 other downstream 304530 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 412021 18705856 ~ 18711994 (+)
LOC120546624 prox1 other downstream 910319 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 1060781 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 1073885 19367720 ~ 19389223 (+)

Expression


Co-expression Network