si:ch211-142k18.1 (LOC104964445)


Basic Information

Item Value
gene id si:ch211-142k18.1
gene name LOC104964445
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18273829 ~ 18282702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781472.1
CCACACTCTCCAGCCAATCCCtaattgtgtgtgcgtgtgtctgcattttttttcctcacatgAAGAAGGAAACCGAGTGAGCATTTGTTCTCTGAGCCTGTGTCTGGTAGTGCTGATCCTTTTGAATGGTTTGCTTGACTGAAAAAGTGAAGGTGGCAGAATTTAGCTGTGAAAAATTACTGGAGTTTGGTTACCATGTGGCATTGTTGGATGCCCTTCATCTTGGCCTGGGTATCCATGGCAACCCCAATGCTCTGCCAAAGTGGAGATTGGGGTTCAGGCTTTGACATTTACTCTGCGAGAATGGCCACCAATCACACCTTGCAGGCAGTTGGTGATGAGCCTGTGAGGATAAGAAACAATCAAGACTGGGTCACATCAGCAGCTTCACCTACGCTGCAGTATGAGCCTCAACCGGACAAGTGCTCGGTCAACTTCAGCACTGACACTGCTTCAGCTCGAAGGCTGAAGGCCCAGAAAGAGGAGCTGGCCTATCTGCAGGCCATCCAGCATGGAAACAAGGCAGTGATGGAGAACTTGGTGCAGTTTGTGGGGGCAGAGTTGGGAGATCAGAACTATGAAGATGTGATTAAGGAAAATGTCATTGGCATCCAAGAAGACCACAAGAGTTGCCATGAGGTGGTGGAGAAAGCTGAAGAAGATATGGAAAAGCAGCTGGAGGGGGAAGTGTTGGGTGCTGGGATGCAGAAAATCAGAGAAGAGTCCTTGGCCTTCGAAGACATGCTTCGCGCTGCAGTGGACATCGCCAACAGGCTGGAGATCTCATCGCAGTCTCTGCATGCTTCATTCACCAAGCAGCTGAAAGACATTGCCAAAATTCATCACTAAGGAAGTGTTGAAAAGACTGGTTGCCCTCATGTCATCCTCCAACTTGGTGAGGATGTATGGTATCCTGTGTGAGACCcaaaataagggaaataaaCCTTCCTGCCATTtgatatttttaattaatttatctATATATGCTTAGATTACTATGATACAAAATGTGTCAAAGTCTGCCATTATATCAACTGTAGGTATCAACGTTGTTAAAAGATGACAGGAAAGTTAAGAGAACAAAGCAAAAAAGCATTGTTGGTTTCCCTTCACCCAAGTTATAACCCCATAACTCAAccccataaaataaaatattattttccATTCAGGCATTATTCATGAAATTGGGTGAGGTCAAATGTGGTAACAGTATGTGGTGCAGGTTTAAGCCAAGTTGAGTGTTAATGGATCAAACTAGAATGGCCTTCAGAGACCAAACATAATGGCTCTGTTAGTCTTCTCAAGGGGAAGCTATGGATCAGCCATCTGGTTCCAGGGTGAGGATGGAGGCCAGGATACGCTTAGGATAATATAGTGTGTTCCaactgacatttttatttttgcaaaaaaaaaaaaaggagaagactGAAACTGGGTCTGCAATACAAACCATTGTTTTctcttgtgaaaaaaaacaactatgcAATAACCTGTGTATGAGGGACAAGAtattgtttaaagtgctcatattatgcttattttcaggttcataattgtatttagaggttgtaccagaataggttt
>XM_039781473.1
CTCTTTTCAGGTTACCATGTGGCATTGTTGGATGCCCTTCATCTTGGCCTGGGTATCCATGGCAACCCCAATGCTCTGCCAAAGTGGAGATTGGGGTTCAGGCTTTGACATTTACTCTGCGAGAATGGCCACCAATCACACCTTGCAGGCAGTTGGTGATGAGCCTGTGAGGATAAGAAACAATCAAGACTGGGTCACATCAGCAGCTTCACCTACGCTGCAGTATGAGCCTCAACCGGACAAGTGCTCGGTCAACTTCAGCACTGACACTGCTTCAGCTCGAAGGCTGAAGGCCCAGAAAGAGGAGCTGGCCTATCTGCAGGCCATCCAGCATGGAAACAAGGCAGTGATGGAGAACTTGGTGCAGTTTGTGGGGGCAGAGTTGGGAGATCAGAACTATGAAGATGTGATTAAGGAAAATGTCATTGGCATCCAAGAAGACCACAAGAGTTGCCATGAGGTGGTGGAGAAAGCTGAAGAAGATATGGAAAAGCAGCTGGAGGGGGAAGTGTTGGGTGCTGGGATGCAGAAAATCAGAGAAGAGTCCTTGGCCTTCGAAGACATGCTTCGCGCTGCAGTGGACATCGCCAACAGGCTGGAGATCTCATCGCAGTCTCTGCATGCTTCATTCACCAAGCAGCTGAAAGACATTGCCAAAATTCATCACTAAGGAAGTGTTGAAAAGACTGGTTGCCCTCATGTCATCCTCCAACTTGGTGAGGATGTATGGTATCCTGTGTGAGACCcaaaataagggaaataaaCCTTCCTGCCATTtgatatttttaattaatttatctATATATGCTTAGATTACTATGATACAAAATGTGTCAAAGTCTGCCATTATATCAACTGTAGGTATCAACGTTGTTAAAAGATGACAGGAAAGTTAAGAGAACAAAGCAAAAAAGCATTGTTGGTTTCCCTTCACCCAAGTTATAACCCCATAACTCAAccccataaaataaaatattattttccATTCAGGCATTATTCATGAAATTGGGTGAGGTCAAATGTGGTAACAGTATGTGGTGCAGGTTTAAGCCAAGTTGAGTGTTAATGGATCAAACTAGAATGGCCTTCAGAGACCAAACATAATGGCTCTGTTAGTCTTCTCAAGGGGAAGCTATGGATCAGCCATCTGGTTCCAGGGTGAGGATGGAGGCCAGGATACGCTTAGGATAATATAGTGTGTTCCaactgacatttttatttttgcaaaaaaaaaaaaaggagaagactGAAACTGGGTCTGCAATACAAACCATTGTTTTctcttgtgaaaaaaaacaactatgcAATAACCTGTGTATGAGGGACAAGAtattgtttaaagtgctcatattatgcttattttcaggttcataattgtatttagaggttgtaccagaataggttt

Function

NR:

description
uncharacterized protein LOC110522646

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781472.1 True 1584 mRNA 0.43 3 18273829 18282702
XM_039781473.1 False 1405 mRNA 0.43 2 18280266 18282702

Neighbor

gene id symbol gene type direction distance location
nme6 nme6 coding upstream 75326 18194483 ~ 18198503 (+)
atraid atraid coding upstream 96725 18173169 ~ 18177104 (+)
blk blk,LOC102291483,LOC102797075 coding upstream 261878 18002070 ~ 18011951 (+)
LOC120546768 NA coding upstream 279831 17976113 ~ 17993998 (+)
sox7 sox7 coding upstream 318231 17952559 ~ 17955598 (+)
chrna2b LOC104964447,LOC101470861 coding downstream 1198 18283900 ~ 18293835 (+)
LOC120547097 LOC104922430,LOC103363566,LOC104964450 coding downstream 64534 18347236 ~ 18358913 (+)
zc3h14 zc3h14 coding downstream 119370 18402072 ~ 18409077 (+)
batf batf coding downstream 131310 18414012 ~ 18419160 (+)
flvcr2b LOC104964435,LOC107377514,LOC101468256,LOC103363569,LOC108242486,LOC100710273 coding downstream 136954 18419656 ~ 18442262 (+)
G185323 NA non-coding upstream 91846 18181132 ~ 18181983 (+)
LOC120546825 NA non-coding upstream 109175 18155970 ~ 18164654 (+)
G185258 LOC104959833,LOC107082730,LOC103138645,LOC106923247,LOC106920026 non-coding upstream 168925 18103025 ~ 18104904 (+)
G185254 NA non-coding upstream 214462 18057411 ~ 18059367 (+)
G185156 NA non-coding upstream 509037 17763969 ~ 17764792 (+)
G185353 NA non-coding downstream 15161 18297863 ~ 18298151 (+)
G185354 NA non-coding downstream 16611 18299313 ~ 18300098 (+)
G185356 NA non-coding downstream 19478 18302180 ~ 18302519 (+)
G185357 NA non-coding downstream 19996 18302698 ~ 18302965 (+)
G185359 NA non-coding downstream 22552 18305254 ~ 18305577 (+)
znf513a znf513,LOC102795572 other upstream 133569 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 218903 18020956 ~ 18054926 (+)
G185237 NA other upstream 356581 17916853 ~ 17917248 (+)
LOC120546940 NA other upstream 580195 17674393 ~ 17693634 (+)
G185145 LOC108242497,LOC106926748,LOC106945794 other upstream 587431 17669172 ~ 17686398 (+)
ylpm1 ylpm1 other downstream 315663 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 423154 18705856 ~ 18711994 (+)
LOC120546624 prox1 other downstream 921452 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 1071914 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 1085018 19367720 ~ 19389223 (+)

Expression


Co-expression Network