rbm25b (rbm25,LOC108233444,LOC103353665,LOC102789801)


Basic Information

Item Value
gene id rbm25b
gene name rbm25,LOC108233444,LOC103353665,LOC102789801
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23611009 ~ 23624138 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781487.1
AGTCTGGTACGTAGAGCGCTTGCGTAAATGTGTTTGAAGGCCCGTGACTAGCCAGCGTGCTAATCCAACATTCGGGACGTTACAAAGAATTTCATAATTTATCACCTTCTGAAAGCGGTTTTATCCCCCTCTACGCCACCTATTTCTGGGTTGGTCCGATTCACACCCAGAATGTCCTTCCCTCCTCATTTAAACCGGCCGCTGTTGCCCCCTCCTGGGATGCCCCCTCAATTTGCTGGCTTCCCTTCTGGAGCTCCAATGATCCCAGTTCACATGGGCATCATGACCCCCACTTCTGCAGTAATGCTGCCTTCTGTGCAAGTGATCAGTAAGCCTGCAATTCATAAAAAGGAAATACTGCGAGTCAGAGACAACAATGAGAACAGCGGCCCTACTACCACAGTGTTTGTGGGGAACATATCAGAGAAAGCTTCAGATATGCTGATCAGACAGCTGCTCGCGAAATGTGGAATTGTTCTGAGCTGGAAGAGAGTCCAAGGAGCCTCTGGCAAGCTTCAAGCCTTTGGGTTTTGTGAGTACAAGGAGCCAGAGTCCACATTGCGAGCACTGCGGCTGCTCCATGACCTGCagattggagaaaaaaatctgTTGGTGAAGGTGGATGCCAAGACTAAAGCTCAGCTGGACGAGTGGAAGGCCAAGAAAAACACTGTGAATGGGAATAATAAGGCTGAAGATGGTGGAGATGATGAGGAAGAGGTTCTAGACGAGGAGACCAAGAAGAAGGATCAGATTATCAAAGGAGCTATTGATGGATTGATGCGGGAATATGCTGCCGAACTCAACGCGCCATCCCAGGATGAGGACTCCCAGCgacgaaaaagaaaaaaggagaaaaaagaagaggaCGACATTAACGCTATTGATATGGAGGACGACAAGAGAGACCTGATTTCCAGAGAAATTAGTAAATTCCGAGACACTCACAAGAAACTAGAAGAAGAGAAGGACAAGAGGGAGAAGGAGCGGCTGGAGTTTGAGCGGGAACGGAGGGAGCGGGAAAAAGAGCGAGAGCGGGAAAGAGAGCGGCGGGACCACGAGAGGGAGAAGGAACGAGAGAAGGAAcgggagagggaaagagagcgGGAAcgggagagagacaaagaccgCGACCGCAGGaccagagaaagagagcgagacagagacTGGGATCGAGACCGAAGCCGTGACAAGAGCCCCGAACGCAGCCGATCCAGggAAGTGAGtcgagacagagaaaagaaacgAGACcaagaggatgaagaggaggcttaTGAACGCAGGAAGCTGGAGAGAAAACTAAGAGACAAGGAAGCAGCCTATCAGGAGCGTTTAAAAAACTGGGAGCTCAGGGAGCGGAAGAAGGCACGGGATTACGCCAAAGAGGCCGAGAGGGAAGAAGAGCGCAGACGAGAAACGGTGAAAGAGGGCAAACGGTTAAAAGAGTTTCTTGAAGACTATGACGATGACAGAGATGACCCCAAGTACTACAGGGGCAGTGCACTGCAGAAGCGTCTCAGAGACCGAGAGAAGGAGATGGAGGCGGACGAGCgtgacaggaagagagagaaggaggagctggaggagatCAGACAGAGGCTGTTAGACGAGGGACATCCAAACCCAGACGCAGAGCTACGCAGGatggaggaggaagaggaggagcgtCTGCGACAACCTCCCATCATCCAAGAGCCGGAGCCCGAGGAGGTACGGGAACGCCACAGGAGTTCACGAGACCACCGGGAGTGCCGACAGGAACCGGAGAGATCAGAACCCCGCGCACGGCCTGTCCACTCAGACGACGAGGTGGAGGAGGGTGAGGAAGATGACAATGACGAAGATAACCCTGACTCAAAACCATGCTTGAAGCCCACGATGCGGCCCATCACAGCAGCACCCTCAGTGTCGTCTGCCAGTGGCAATGCGTCCCCCAACACACCCGGGGACGAGTCGCCCTGCGGCATCATCATCCCCCACGAAAACTCTCCCCCTGAGGCTCTGCCGCAGGAGGAACACCGGCCAAAGATCGGCCTCAGTCTCAAACTGGGTGCCTCAGGAAGCCCCAGTCAGCCCAACACTGGTAAGAGGAAGAAGCTGCCCGTGGACAGCGTCTTCGACAAGTTTGATGACGAAGAGGCTGACGAACAGCCTCGCAAGAGGAAGCTGGTGCCCCTGGATTACGATGATGACAAGAGCCTCGGGGTGGACGGGGCCGGGCTCTCCAGCATAAAGGGGGACAACACCGAGGAGAAGCGTAAACACATCAAGAGCCTGATAGAAAAAATTCCCACCGCAAAACCTGAGCTGTTCTCCTACCCACTGGACTGGGCTATGGTTGACACGACTTTAATGGAACGGCGTGTTCGACCCTGGATCAATAAAAAGATTATTGAGTACATTGGAGAAGAAGAGGCGACGTTAGTGGACTTTGTCTGCTCCAAGGTGATGGCTCACAGTATGCCACAGAGTATCTTGGATGATGTTGCTATGGTTcttgatgaagaagctgaagTCTTCATAGTGAAGATGTGGAGGTTACTCATTTACGAAACTGAAGCTAAGAAGATCGGACTGGCGAAATAAGCAAAACAACCACCGAATGACgatcaacagttttttttttttttttttttttttttcatacatcgTGTATAATAGTGTAGCACAATTATGTCACCCCAAACCAAGCGACGTGTCCATATCAGTACCGACTGTAACTGCAGATTCTGCTCGTTGTCACAAATGCACCAGTTGTTCAGGTCGTGTCGGGtttttccccccctcccctctttgtTAGCAGGTGCTGACTGTGTCGGTGTGCTATTGTGTAAATAGTAGTCATTGTTTGACTATGATGAAATAATTCTGAGAGGAGACCGTGGACCATTGTTGCCAGATTAGTCTATTGGTcctattttatttgtatacatGCCAACACACTTTATGGGAAGAGTCGTGCAGCAATcaaacttttatttaaagtcTGTAAGGTGTAAGTCTGGCTTCCAGTTGAATGAGGGTATGTTAAGTGGACTTTAGAGTATGCATAACTACAACCAAGGAACCTATAAAAGGTTCCTTAACTACTACACGGATGTAATCTTTTTTTACAGGGTTATTTATTCGGTATATCGGGTTTACAGatgttttctcttcatttttCCTTATCACATTCCTTATAAATGTGTTGGCATGTTCATTGTCCTCAGACCATCTCAAAAAGCACCTACCGTAGTTTTCATTTGAAATGCGTCTACTGACAAGACCCACAGAATATATCTTGGATGGCTACATCCCTGCAGCTATACACACCTAACCACTATAGGAAAATGAGCTAAGaacggggaaaaaaaatatttgaagttGTGAAGATGCtccatttgtttttgtattggtgaacatttgaataaaatggatttttttatAA
>XM_039781488.1
AGTCTGGTACGTAGAGCGCTTGCGTAAATGTGTTTGAAGGCCCGTGACTAGCCAGCGTGCTAATCCAACATTCGGGACGTTACAAAGAATTTCATAATTTATCACCTTCTGAAAGCGGTTTTATCCCCCTCTACGCCACCTATTTCTGGGTTGGTCCGATTCACACCCAGAATGTCCTTCCCTCCTCATTTAAACCGGCCGCTGTTGCCCCCTCCTGGGATGCCCCCTCAATTTGCTGGCTTCCCTTCTGGAGCTCCAATGATCCCAGTTCACATGGGCATCATGACCCCCACTTCTGCAGTAATGCTGCCTTCTGTGCAAGTGATCAGTAAGCCTGCAATTCATAAAAAGGAAATACTGCGAGTCAGAGACAACAATGAGAACAGCGGCCCTACTACCACAGTGTTTGTGGGGAACATATCAGAGAAAGCTTCAGATATGCTGATCAGACAGCTGCTCGCGAAATGTGGAATTGTTCTGAGCTGGAAGAGAGTCCAAGGAGCCTCTGGCAAGCTTCAAGCCTTTGGGTTTTGTGAGTACAAGGAGCCAGAGTCCACATTGCGAGCACTGCGGCTGCTCCATGACCTGCagattggagaaaaaaatctgTTGGTGAAGGTGGATGCCAAGACTAAAGCTCAGCTGGACGAGTGGAAGGCCAAGAAAAACACTAATAATAAGGCTGAAGATGGTGGAGATGATGAGGAAGAGGTTCTAGACGAGGAGACCAAGAAGAAGGATCAGATTATCAAAGGAGCTATTGATGGATTGATGCGGGAATATGCTGCCGAACTCAACGCGCCATCCCAGGATGAGGACTCCCAGCgacgaaaaagaaaaaaggagaaaaaagaagaggaCGACATTAACGCTATTGATATGGAGGACGACAAGAGAGACCTGATTTCCAGAGAAATTAGTAAATTCCGAGACACTCACAAGAAACTAGAAGAAGAGAAGGACAAGAGGGAGAAGGAGCGGCTGGAGTTTGAGCGGGAACGGAGGGAGCGGGAAAAAGAGCGAGAGCGGGAAAGAGAGCGGCGGGACCACGAGAGGGAGAAGGAACGAGAGAAGGAAcgggagagggaaagagagcgGGAAcgggagagagacaaagaccgCGACCGCAGGaccagagaaagagagcgagacagagacTGGGATCGAGACCGAAGCCGTGACAAGAGCCCCGAACGCAGCCGATCCAGggAAGTGAGtcgagacagagaaaagaaacgAGACcaagaggatgaagaggaggcttaTGAACGCAGGAAGCTGGAGAGAAAACTAAGAGACAAGGAAGCAGCCTATCAGGAGCGTTTAAAAAACTGGGAGCTCAGGGAGCGGAAGAAGGCACGGGATTACGCCAAAGAGGCCGAGAGGGAAGAAGAGCGCAGACGAGAAACGGTGAAAGAGGGCAAACGGTTAAAAGAGTTTCTTGAAGACTATGACGATGACAGAGATGACCCCAAGTACTACAGGGGCAGTGCACTGCAGAAGCGTCTCAGAGACCGAGAGAAGGAGATGGAGGCGGACGAGCgtgacaggaagagagagaaggaggagctggaggagatCAGACAGAGGCTGTTAGACGAGGGACATCCAAACCCAGACGCAGAGCTACGCAGGatggaggaggaagaggaggagcgtCTGCGACAACCTCCCATCATCCAAGAGCCGGAGCCCGAGGAGGTACGGGAACGCCACAGGAGTTCACGAGACCACCGGGAGTGCCGACAGGAACCGGAGAGATCAGAACCCCGCGCACGGCCTGTCCACTCAGACGACGAGGTGGAGGAGGGTGAGGAAGATGACAATGACGAAGATAACCCTGACTCAAAACCATGCTTGAAGCCCACGATGCGGCCCATCACAGCAGCACCCTCAGTGTCGTCTGCCAGTGGCAATGCGTCCCCCAACACACCCGGGGACGAGTCGCCCTGCGGCATCATCATCCCCCACGAAAACTCTCCCCCTGAGGCTCTGCCGCAGGAGGAACACCGGCCAAAGATCGGCCTCAGTCTCAAACTGGGTGCCTCAGGAAGCCCCAGTCAGCCCAACACTGGTAAGAGGAAGAAGCTGCCCGTGGACAGCGTCTTCGACAAGTTTGATGACGAAGAGGCTGACGAACAGCCTCGCAAGAGGAAGCTGGTGCCCCTGGATTACGATGATGACAAGAGCCTCGGGGTGGACGGGGCCGGGCTCTCCAGCATAAAGGGGGACAACACCGAGGAGAAGCGTAAACACATCAAGAGCCTGATAGAAAAAATTCCCACCGCAAAACCTGAGCTGTTCTCCTACCCACTGGACTGGGCTATGGTTGACACGACTTTAATGGAACGGCGTGTTCGACCCTGGATCAATAAAAAGATTATTGAGTACATTGGAGAAGAAGAGGCGACGTTAGTGGACTTTGTCTGCTCCAAGGTGATGGCTCACAGTATGCCACAGAGTATCTTGGATGATGTTGCTATGGTTcttgatgaagaagctgaagTCTTCATAGTGAAGATGTGGAGGTTACTCATTTACGAAACTGAAGCTAAGAAGATCGGACTGGCGAAATAAGCAAAACAACCACCGAATGACgatcaacagttttttttttttttttttttttttttcatacatcgTGTATAATAGTGTAGCACAATTATGTCACCCCAAACCAAGCGACGTGTCCATATCAGTACCGACTGTAACTGCAGATTCTGCTCGTTGTCACAAATGCACCAGTTGTTCAGGTCGTGTCGGGtttttccccccctcccctctttgtTAGCAGGTGCTGACTGTGTCGGTGTGCTATTGTGTAAATAGTAGTCATTGTTTGACTATGATGAAATAATTCTGAGAGGAGACCGTGGACCATTGTTGCCAGATTAGTCTATTGGTcctattttatttgtatacatGCCAACACACTTTATGGGAAGAGTCGTGCAGCAATcaaacttttatttaaagtcTGTAAGGTGTAAGTCTGGCTTCCAGTTGAATGAGGGTATGTTAAGTGGACTTTAGAGTATGCATAACTACAACCAAGGAACCTATAAAAGGTTCCTTAACTACTACACGGATGTAATCTTTTTTTACAGGGTTATTTATTCGGTATATCGGGTTTACAGatgttttctcttcatttttCCTTATCACATTCCTTATAAATGTGTTGGCATGTTCATTGTCCTCAGACCATCTCAAAAAGCACCTACCGTAGTTTTCATTTGAAATGCGTCTACTGACAAGACCCACAGAATATATCTTGGATGGCTACATCCCTGCAGCTATACACACCTAACCACTATAGGAAAATGAGCTAAGaacggggaaaaaaaatatttgaagttGTGAAGATGCtccatttgtttttgtattggtgaacatttgaataaaatggatttttttatAA

Function

symbol description
rbm25 Enables mRNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome and regulation of apoptotic process. Located in nuclear speck.

NR:

description
PREDICTED: RNA-binding protein 25-like isoform X2

GO: NA

KEGG:

id description
K12822 RBM25, S164; RNA-binding protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781487.1 True 3430 mRNA 0.49 17 23611009 23624138
XM_039781488.1 False 3421 mRNA 0.49 17 23611009 23624138

Neighbor

gene id symbol gene type direction distance location
slc35b2 slc35b2 coding upstream 13610 23589968 ~ 23597399 (+)
rnf8 NA coding upstream 56743 23548578 ~ 23554266 (+)
mia3 mia3 coding upstream 71165 23522887 ~ 23539844 (+)
hlx1 hlx,LOC102784911 coding upstream 215673 23391206 ~ 23395336 (+)
slc35f6 slc35f6 coding upstream 229795 23371884 ~ 23381214 (+)
atp6v1d atp6v1d coding downstream 16737 23640875 ~ 23644644 (+)
tmem121ab tmem121,LOC101465360,LOC102792477,LOC107377718 coding downstream 405915 24030053 ~ 24068592 (+)
nt5c1bb LOC104946496,LOC101163217,LOC103359106 coding downstream 583188 24207326 ~ 24215960 (+)
si:dkey-174m14.3 LOC102302461,LOC103359114,LOC101468873,LOC102795766,LOC102194912 coding downstream 600919 24225057 ~ 24252680 (+)
LOC120546721 NA coding downstream 635410 24259548 ~ 24278489 (+)
G186882 hsp90ab1 non-coding upstream 3474 23602636 ~ 23607535 (+)
LOC120546283 NA non-coding upstream 104445 23475699 ~ 23506564 (+)
G186841 NA non-coding upstream 171489 23438240 ~ 23439520 (+)
G186843 NA non-coding upstream 175658 23435136 ~ 23435351 (+)
G186842 NA non-coding upstream 178626 23420899 ~ 23432383 (+)
G186901 mpp5 non-coding downstream 23441 23647579 ~ 23649568 (+)
G186902 mpp5 non-coding downstream 26258 23650396 ~ 23658430 (+)
G186905 gphn,LOC106608213 non-coding downstream 42799 23666937 ~ 23668127 (+)
G186954 NA non-coding downstream 205387 23829525 ~ 23861934 (+)
G186961 NA non-coding downstream 244142 23868280 ~ 23925648 (+)
nfkbie nfkbie other upstream 21320 23578378 ~ 23589689 (+)
tcte1 NA other upstream 46580 23559498 ~ 23564429 (+)
rsph3 rsph3 other upstream 414013 23192638 ~ 23196996 (+)
ppp2r5a ppp2r5a other upstream 468369 23095912 ~ 23142640 (+)
dtl dtl other upstream 515504 23087820 ~ 23095505 (+)
G186975 NA other downstream 455465 24079603 ~ 24083104 (+)
LOC120547070 NA other downstream 520859 24144997 ~ 24146762 (+)
extl3 extl3 other downstream 531349 24155487 ~ 24187864 (+)
G187094 bpnt1,LOC102799416 other downstream 882775 24506913 ~ 24507813 (+)
lama2 lama2,LOC104942190 other downstream 1185941 24810079 ~ 25009457 (+)

Expression


Co-expression Network