parp1 (parp1,LOC102777090)


Basic Information

Item Value
gene id parp1
gene name parp1,LOC102777090
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19391005 ~ 19403199 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781564.1
GTCTTCTCTCTACAGGCACGCGGGATTCGCCTCTCTGTGCATGATTGTTGTGGCTCCTCGACATCCGGAGAAAGTTCGCCTCACAGTCACTTCATTTTATTTCGCTGTAATATTAAATAAGCATGGCGGACTCTCAAGAGGACAAGCTGTACAAAGCGGAATATGCCAAAAGCGGCCGTGCATCGTGCAAGAAATGCAAAGAAAACATAGCGAAAGACTCGCTGAGAATGGCCATCATGGTGCAGTCACCCATGTTTGATGGGAAAGTCCCCCACTGGCACCACTTCTCTTGCTTCTGGCTGCGAGCAGCAGCTCAGTCCACGGCTGATATTGCTGGATATTCTGACCTCCGCTGGGATGACCAGGAGAAGGTCAAAAAGGCCATTGAAACTGGTGGAGCAACAGGAGGAAAAGGGGACCAGAAGAGTGGAGctaaaggagagaagacactaaaTGACTTTGCGGTTGAATATGCCAAATCGAACCGCAGCACATGCAAAGGCTGTGATCAGAAAATAGAAAAGGATCAGATCCGTGTATCCAAGAAATCTGTGGACCCAGAGAAGCCCCAGCTGGGTCTTATCGACCGCTGGTACCACACTGCGTGTTTTGTGAGCCGTAGGGAGGAACTGGTCTTCAAGCCTGAATACAGCGCCGGCCAGCTGAAGGGTTTCAACGCACTACGGACAGAAGACAAGGAGGAACTTAAGAAGAGGCTCCCTGCTGTCAAAACTGAAGGGAAGCGTAAAGCTGATGAGGTGGATGGACCATCAAAGAAACagaagaaggaggaagaggcgGAAAAGAAGAAGCTGGAGGAGCACTTGAagAACCAAAGCCAGCTGATTTGGGGAGTCAAAGACAAGCTGAAGAAGTTTTGTTCAATCAACGATATGAAGGAGCTGCTGATTGCAAATGGCCAGGATGTTCCCTCTGGAGAATCCAATGTGGTGGACTGCCTGGCCGACGGCATGGCTTTTGGTGCTCTCGAGGCCTGTAAGGAGTGCACGGGCCAGCTGGTGTTTAAGGGCGACGCTTATTACTGTACAGGGGACATCTCAGCCTGGACAAAGTGTGTGTTCAAAACCACAACACCCATACGCAAAGACTGGGTCATCCCCAAGGAATTCCACGAAGTTCCCTTCCTGAAAAAATTCAAGTTCAAGCGACAGGACAGGGTTTACCCGAAGGAGGCTCCCACCCAAACCCTCACCGCAGCCAAAGCACAACCCATGGCGAGTGCATCCAGTGCACCGACTGAGCGACTGCCAGAGGGAGCACCTGCAGACAAACCTCTTACTGGTATGAAGCTCTTGACTGTGGGGAAGCTGACTAAGAACAAGGATGATCTAAAGGTGGCTGTAGAGGAGCTGGGTGGAAAGATTACCAGCACAGCCAATAAGGCCTCTCTCTGCCTCAGCACCAAGAAGGAGGTGGAGAAGATGAGTAAGAAAATGGAGGAGGCGAGGGACGCTGGCGTGCGCGTGGTCTCCGAGGATTTCCTCACAGACGTCAAGTCATCGGGTAAAGCCCTCCAGGAACTGGTTTCCCTGCATGCCATTTCACCCTGGGGTGCAGAGGTCAAAGTCGAGGCTCCAGCTCCGTCTGCGGCCTCCAAATCTGGAGCGCTGGCTACCAAAAGCACTGGCAgggtgaaggaggaggaagGTAGTAGCAAATCTAAGAAAATGAAACTCACCGTCAAAGGAGGAGCTGCTGTGGATCCAGATTCAGGTCTGGAGAACAGCGCTCATGTCCTGGAGCAGAGCGGGAAGATGTACAGTGCTACGCTGGGTCTCGTGGACATTGTCAGAGGAACTAACTCCTACTATAAGCTGCAGCTGCTGGAGGATGATGTACAGAAACGGTACTGGGTGTTCAGGTCATGGGGCAGAGTGGGTACCACCATCGGAGGCAATAAGCTGGACAAGTTTCATGACAAAAACTCTGCCCTGGACAACTTCCTGGGTGTCTACAAAGAGAAGACGGGCAACGACTGGAGCTCCTCCAACTTCACCAAATATCCCAATAAGTTCTACCCCCTGGAGATTGACTATGGACAGGATGAAGAAGCGGTGAAGAGGCTGACGGCAACCGCCGGCACCAAGTCCAAGCTAGCCAAACCCGTCCAGGAGCTGATCAAGATGATCTTCGATGTAGAGAGCATGAAGAAGGCTATGGTGGAATTTGAGATTGACCTCCAGAAGATGCCCCTCGGAAAGCTGAGTAAGAGGCAGATCCAGAGTGCCTATGCTCTCCTCACTGAAGTCCAGCAGGCTGTGTCAGAAAGTGCGTCTGAGGCCCACATCCTGGATCTCTCCAATCGCTTCTACACCCTGATACCTCACGACTTTGGTATGAAGAAACCCCCACTGCTCAGCAGCCTGGACTACGTTCAAGCTAAAGTTCAGATGTTGGACAACCTGTTGGACATTGAAGTGGCATACAGCCTGTTGAGAGGAGGGGCCCAGGACGATGAGAGTGATCCCATCGACATCAACTATGACAAACTTAAAACCAAGATTGAGGTTGTTGACAAGACTACAGATGAGGCTAAGATCATTTTGGAATATGTTAAGAACACCCATGCTGCTACACACAACACTTACACACTGGAAGTGCAAGAGATCTTCAAAATTGCTCGAGAGGGAGAGCGCCAACGGTACCGTCCCTTCGAGGAGCTACATAATCGCCAGCTACTGTGGCACGGTTCTCGCACCACCAACTACGCTGGTATCATGTCTCAGGGTCTTCGCATTGCCCCTCCAGAGGCCCCAGTGACTGGTTACATGTTCGGCAAAGGTGTGTACTTTGCCGACATGGTGTCCAAGAGTGCAAACTACTGTCACACCTCCCAGTCAGACCCTGTAGGTCTCCTGCTGCTGGCCGAGGTTGCCCTCGGCAACATacaTGAATTGAAGAAGGCGTCCCACATAACAAAAGTACCTAAGGGCAAGCACAGTGTTAAAGGTTTGGGTCGAACTGCTCCTGATCCAGGCGCCACTGTCACTCTAGACGGTGTGCAAGTGCCTCTGGGAAAAGGAGTCAACACTAACATTGATGACACCAGTCTCCTGTACAATGAGTACATTGTGTATGATGTGGCGCAGATAAACATGAAGTATCTCCTGAATGTCAAGTTTAACTACCAGACGTCCCTGTGGTGAGAGGGGCTGTGTCTGAACCCTGTTCAGTGAAAACAAAGACCACGGTTGCCTCCAAACGCCTGCGCTTCATTCGACGTTTGGCAAAGGAGTGATGCTTTCCACACTTTACAATGCTCATTGGAACTCTCTAGtcactttatttcttttttatcggGTTTACTAGCTGGCAGCCTTTCATCTTCTTAGTAATGCATTAGGTACTTAAATCCCTACTTCAGAATTACTCAGAAGACAGACATAAATCAAAGTTCAATATAGTGGTTTGAAGCGCAGTGCATACTACATAGAAAGGTTTTGGTTTAGAACATCAGaatttttttctgtctcacaTGGTTATcttgaatttaaaaataatcttaTTTCTTCATTCTTTAATGAACCCGTAGTTAAGGCTTAGTACTGTACGTTTAAAAGGAGTTTTGAGTTGTGAACAACCAATCTGCAGACATACACAAACCAGTAGCTACTCAGATGAAGATTTTGTGGACTGTTGGGTTTAAAATACTGTTCAAGGTTTgacatgtatatatttgttttgtttgtctctcAAGCTGTCTTCCTTGcagaaaaggaaaaatatataaacGTGGTTTGTGTTTTTGCAAAGTATTATGTAAGAGAAACGACTGACATGGTATGTGGCACCCTTTTTCTTAGTGTTTTTCTCGCTTAACtctaatacaataaaatgttgaGAGTCCTCAAAATGTCA

Function

symbol description
parp1 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Predicted to be involved in double-strand break repair and protein poly-ADP-ribosylation. Predicted to act upstream of or within protein ADP-ribosylation. Predicted to be located in chromosome and nucleus. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in several diseases, including arthritis; bacterial meningitis; neurodegenerative disease (multiple); stomach carcinoma; and type 2 diabetes mellitus. Orthologous to human PARP1 (poly(ADP-ribose) polymerase 1).

NR:

description
poly [ADP-ribose] polymerase 1

GO:

id name namespace
GO:0006471 protein ADP-ribosylation biological_process
GO:0005634 nucleus cellular_component
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K24070 PARP1; poly [ADP-ribose] polymerase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781564.1 True 3879 mRNA 0.49 23 19391005 19403199

Neighbor

gene id symbol gene type direction distance location
LOC120546239 NA coding upstream 57389 19328007 ~ 19333616 (+)
smyd2b smyd2,LOC103360985 coding upstream 121607 19260262 ~ 19269398 (+)
rps6kc1 rps6kc1 coding upstream 264346 19102583 ~ 19126659 (+)
moxd1l NA coding upstream 288585 19097059 ~ 19102420 (+)
si:ch211-203k16.3 LOC102290548,LOC102780528,LOC100708179,LOC101478729,LOC102192128,LOC103369909 coding upstream 314523 19070669 ~ 19076482 (+)
lin9 lin9 coding downstream 657 19403856 ~ 19412698 (+)
si:ch211-225h24.2 tdrp coding downstream 181503 19584702 ~ 19598107 (+)
LOC120546417 NA coding downstream 296523 19699722 ~ 19703391 (+)
si:dkey-119f1.1 smc6 coding downstream 309465 19712664 ~ 19731224 (+)
fig4a fig4,LOC102794534 coding downstream 341978 19745177 ~ 19830843 (+)
G185656 NA non-coding upstream 111648 19278107 ~ 19279357 (+)
G185599 snx9,LOC106928315,LOC103138599,LOC106957401 non-coding upstream 307221 19082696 ~ 19083784 (+)
G185593 NA non-coding upstream 344898 19045414 ~ 19046107 (+)
G185592 kcnk2 non-coding upstream 347457 19043224 ~ 19043548 (+)
G185591 kcnk2 non-coding upstream 366427 19024264 ~ 19024578 (+)
G185696 NA non-coding downstream 150075 19553274 ~ 19554235 (+)
G185711 NA non-coding downstream 249038 19652237 ~ 19652575 (+)
G185716 tmem18 non-coding downstream 288937 19692136 ~ 19693056 (+)
G185793 NA non-coding downstream 305132 19708331 ~ 19708930 (+)
G185794 NA non-coding downstream 306015 19709214 ~ 19709512 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other upstream 1782 19367720 ~ 19389223 (+)
LOC120546624 prox1 other upstream 153972 19204154 ~ 19237033 (+)
LOC120547227 LOC104932566,LOC103364615 other upstream 679011 18705856 ~ 18711994 (+)
ylpm1 ylpm1 other upstream 755953 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 1250745 18127131 ~ 18140260 (+)
nhsl1b nhsl1,LOC101470763 other downstream 26396 19429595 ~ 19541832 (+)
zgc:193593 NA other downstream 169374 19572573 ~ 19620783 (+)
acp1 acp1 other downstream 230301 19633500 ~ 19648156 (+)
kif25 LOC104961976,LOC100703631 other downstream 449444 19852643 ~ 19860217 (+)
gtf2h5 gtf2h5 other downstream 1767749 21170948 ~ 21172639 (+)

Expression


Co-expression Network