smyd2b (smyd2,LOC103360985)


Basic Information

Item Value
gene id smyd2b
gene name smyd2,LOC103360985
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19260262 ~ 19269398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781673.1
TCCATGTTGTGAGTGAAAGGTCATTTTGAAGGAAGACAACCCGAAGGAGGCACTATGATGGGCAGCATCGAGGGACTTGAGAGGTTTGACAGTCCTGGTAAAGGCCGAGGTCTCCGCGTTACCAGACCCTTTAAAGTTGGAGAGTTGCTGTTTTCCAGCCCGGCGTACTCTTTTGTGCTGTCACTATCAGAGAGAGGCTGCTACTGCGAGTTCTGCTTTACCAGGAAAGAGGGCTTGGCAAGATGTGGAAAGTGCAAGAAAGCCTTCTACTGCGGTGTGAAATGCCAGAAAGGGGACTGGGCCATGCACAAGCTGGAATGCTCTGCAATGACTGCATTCGGAGAGAACTGGTGCCCGTCAGAGATGTCCCGCCTGGTGGCCCGGATCCTcgccaagaagaaaatgcagaaagaaAGATGTGCTTCTGAGAGGATCTTGCTCATAGAAGAGATCCAATCACACGTGGAGGATGTAGACAATGAGAAAAGAGAGATGACTGAGTCAGATATTGCCGGACTGCATCGCTTTTTCTCCAAACATTTGGAGTTGCCCGACCATAAAGACCTTCTCACACTCTTCTCCCagGTTGCCTGTAATGGTTTCACTATAGAGGATGATGAACTGTCCCACATGGGTACTGCAATCTACCCAGATGTGGCACTGATAAACCACAGCTGTCTTCCCAGTGTCATAGTCACATATAAGGGGACGTCTGCTGAGGTTCGAGCAGTGAAGAACATGAATCCTGGAGATGAAGTGCTCATCAGCTACATAGATCTCCTCTATCCAACAGACGACCGTAACAACAGGCTGAGAGAGTTCTATTATTTCACCTGTCAATGCCAGGAATGCAAAACCAAGTCCAGTGACAAGGCAAAGTTGAAAGTGCGTAAGCAGAGTGACCCCATCGAGCAAGAGGTCATCAGCAACATGGTGCGCTATGCCAGGAAAACCATCAGAGAGTTCCGGGCCCTCAAACGCATAAAAACCCCTAGTGAGTTGCTGGAGATGTGTGAACAGAGCCTGGATGAGATGGGTGCTGTCTTTGATGACGCCAATGTCTACATGCTTCACATGATGTACCAGGCCATGGGGGTTTGTCTCTACATGCAAGATCCAGACGGAGCTATCAGATACGGCGAGAAGATCATCAAACCTTACAGCAAGCTGTATCCACCCTACTCTTTGAATGTGTCCTCCATGTACCTCAAGTTGGGCAGACTGTACATGGGGCTGGAGAGGTACTCAGTGGGCATCAGCGCTCTCAAGAAGGCAATGGCCATAATGGAAGTGGCTCATGGGAGGGATCACCTCTACTTGACAGAGTTGCACAAAGAGATGACACGAAAATGATgagaaaggaaagaaatgaTGTTGAACACAGCTGATCCGAAGCGACTGCAAACACTCCTTTGATTAGGAGCTTCACAGAACTGAAGAAACATTCTACTCTTTTTGATACTGAAGCAAAGATAGAGAGCATTCATGGTTTTTATGCAAAGTTttgtgcaacaaaaatatttttggatATTAAACTTTTTACAACAGTGTGATGTATGCAAGAACCTATTAGTTTGTTGGATGCAGGATACTTTTGTACCAAGCGTGCATTTAATGTTCAGTTATATGCAAATGTGAAAGTCTGACATTGTAAACAGTGCTTTTTACTCATGTTGACCATAA

Function

symbol description
smyd2 Enables p53 binding activity and protein-lysine N-methyltransferase activity. Involved in negative regulation of transcription by RNA polymerase II; peptidyl-lysine monomethylation; and regulation of DNA damage response, signal transduction by p53 class mediator. Located in cytoplasm.

NR:

description
PREDICTED: N-lysine methyltransferase SMYD2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781673.1 True 1683 mRNA 0.46 12 19260262 19269398

Neighbor

gene id symbol gene type direction distance location
rps6kc1 rps6kc1 coding upstream 133603 19102583 ~ 19126659 (+)
moxd1l NA coding upstream 157842 19097059 ~ 19102420 (+)
si:ch211-203k16.3 LOC102290548,LOC102780528,LOC100708179,LOC101478729,LOC102192128,LOC103369909 coding upstream 183780 19070669 ~ 19076482 (+)
prkg3 LOC104947339,LOC103364985,LOC100708987,LOC101479945 coding upstream 257232 18990946 ~ 19003030 (+)
LOC120546316 LOC104947340,LOC103364984,LOC107377588,LOC106510778 coding upstream 270488 18982177 ~ 18989774 (+)
LOC120546239 NA coding downstream 58609 19328007 ~ 19333616 (+)
parp1 parp1,LOC102777090 coding downstream 121607 19391005 ~ 19403199 (+)
lin9 lin9 coding downstream 134458 19403856 ~ 19412698 (+)
si:ch211-225h24.2 tdrp coding downstream 315304 19584702 ~ 19598107 (+)
LOC120546417 NA coding downstream 430324 19699722 ~ 19703391 (+)
G185599 snx9,LOC106928315,LOC103138599,LOC106957401 non-coding upstream 176478 19082696 ~ 19083784 (+)
G185593 NA non-coding upstream 214155 19045414 ~ 19046107 (+)
G185592 kcnk2 non-coding upstream 216714 19043224 ~ 19043548 (+)
G185591 kcnk2 non-coding upstream 235684 19024264 ~ 19024578 (+)
G185590 NA non-coding upstream 237232 19022696 ~ 19023030 (+)
G185656 NA non-coding downstream 8709 19278107 ~ 19279357 (+)
G185696 NA non-coding downstream 283876 19553274 ~ 19554235 (+)
G185711 NA non-coding downstream 382839 19652237 ~ 19652575 (+)
G185716 tmem18 non-coding downstream 422738 19692136 ~ 19693056 (+)
G185793 NA non-coding downstream 438933 19708331 ~ 19708930 (+)
LOC120546624 prox1 other upstream 23229 19204154 ~ 19237033 (+)
LOC120547227 LOC104932566,LOC103364615 other upstream 548268 18705856 ~ 18711994 (+)
ylpm1 ylpm1 other upstream 625210 18598365 ~ 18635052 (+)
znf513a znf513,LOC102795572 other upstream 1120002 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 1205336 18020956 ~ 18054926 (+)
acbd3 acbd3,LOC102799892 other downstream 85218 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 98322 19367720 ~ 19389223 (+)
nhsl1b nhsl1,LOC101470763 other downstream 160197 19429595 ~ 19541832 (+)
zgc:193593 NA other downstream 303175 19572573 ~ 19620783 (+)
acp1 acp1 other downstream 364102 19633500 ~ 19648156 (+)

Expression


Co-expression Network