LOC120546680 (rrm2)


Basic Information

Item Value
gene id LOC120546680
gene name rrm2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34559932 ~ 34571848 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781801.1
TGCGTTCTAGCGCCAAGATTTCAATAAAAAGGGCGAGTGGACAACAGAAACCGCTTCAGTCTCTGCTCTTCTCCTGTGTTTGCTCTGCTCCCTAGTTTAGATTTCTTCTCTTTGTTTTACGCCAACTTTTAATTTAAGTTAACttatctttttatttgtctGTCCGTGTGAACTCCAGGATATAAAAAATGCTTTCTGCTCGCGCCCCTCTCTCCGTGAAGAATGAAAACTCAGTCAGCAGTAAGATGGACACCATGTCtctgaacaaagaaaacacGCCACCGAGCCTGAACACGACCCGCATCTTGGCGTCTAAAACCGCGCGAAAAATCTTCGACGACGCTACGcCCAAAGCCGTGAAGAAGAGCagcgaggaagaggaggagccgCTGCTGAAGGAGAACCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCAGaggaggtggatCTGTCGAAGGACGGGCAGCACTGGGACTCTCTGAAGGACGAGGAGCGCTACTTCATCTCTCACGTGTTGGCGTTCTTCGCCGCCAGCGACGGCATCGCCAACGGAAACCAGGTGGAGCGCTTCACGCAGGAAGTCCAGGTGACCGAGGCCAGGTGTTTCTATGGTTTCCAGATCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTCATCAACACCTACATCAAGAAGCCAGCAGAGAGAGAATACCTGTTCAACGCCATCGAGACTCTGCCCTGTGTGAAGAAGAAGGCCGACTGGGCCATCAACTGGATCGGCAACCAGAACaggatgACAGGAGAGCGCGTTGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGGGTCTCCACTGTGACTTTGCGTGTCTGATGTTCAAACATCTGGTGAACAAACCGTCAGCAGAAACAGTCACAGAGATCATCAGGAACGCTGTGGAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCGGTGAAGCTGATCGGGATGAACTGTGAGCTGATGAAGCAGTACATCGAGTTCGTGGCCGACAGACTGATGCTGGAGCTCGGCTTCACCAAGatcTACCGCGTGGAGAACCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGGAAGACCAACTTCTTCGAGAAGCGAGTGGGCGAGTACCAGCGCATGGGCGTGATGTCGGGCTCCACCGACAACACCTTCAGGCTGGACGCCGACTTCTGAGACCCAGGTGGCGCCATCGCACACTCAGCCACACCTTCTCCCTCTCATTCAACCAATTGGTGTTAACCCTGGCCTATACATCacacccagtgcatgctgggtagTCTTATCCAACCCCAGTGTATACATACCGCtcacccagtgcatgctgggtagTGTTAGTCAACCTGGGTAGTGTTAGTCAAGCCTAGTGTAAACATACCTCTCACTCAGTGCATGCTGGGTAGTCTTATCCAACCCCAGGGAGTCTGTCCCTCtcacccagtgcatgctgggtagTGTTAGTCAGCCCTGGTGTATATGTCCCtcacccagtgcatgctgggaaagtCTTCAACCCAGATGCATCTAGCAGATGAACCCAGACTCTTGTACAGAGCGGAGGTCCATCAGGATGAAATGAGACTTTTTAACCAGATGGAGCCGGTTGTGTTTTGTAAATTTATAGTTTTATCTTCATTttgtaataaaatgtaaatttatttta

Function

symbol description
rrm2 Predicted to enable ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor. Predicted to be involved in deoxyribonucleotide biosynthetic process. Predicted to act upstream of or within DNA replication. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in several structures, including nervous system; pectoral fin musculature; pharyngeal arch 3-7 skeleton; proliferative region; and tail bud. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RRM2 (ribonucleotide reductase regulatory subunit M2).

NR:

description
PREDICTED: ribonucleoside-diphosphate reductase subunit M2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781801.1 True 1833 mRNA 0.52 11 34559932 34571848

Neighbor

gene id symbol gene type direction distance location
LOC120546659 rrm2 coding upstream 32286 34514822 ~ 34527646 (+)
LOC120547361 NA coding upstream 34906 34524888 ~ 34525026 (+)
LOC120547360 NA coding upstream 40506 34519288 ~ 34519426 (+)
LOC120546638 NA coding upstream 186430 34357882 ~ 34373502 (+)
LOC120546567 NA coding upstream 205815 34343568 ~ 34354117 (+)
LOC120546456 NA coding downstream 12199 34584047 ~ 34595606 (+)
LOC120546672 NA coding downstream 50208 34622056 ~ 34624173 (+)
LOC120546653 NA coding downstream 208490 34780338 ~ 34796403 (+)
LOC120546655 NA coding downstream 265350 34837198 ~ 34845092 (+)
LOC120546649 NA coding downstream 284988 34856836 ~ 34895534 (+)
G189576 NA non-coding upstream 2778 34556798 ~ 34557154 (+)
G189575 NA non-coding upstream 13765 34544485 ~ 34546167 (+)
G189550 NA non-coding upstream 42076 34461669 ~ 34517856 (+)
G189553 NA non-coding upstream 56389 34419216 ~ 34503543 (+)
G189572 NA non-coding upstream 65445 34493696 ~ 34494487 (+)
G189579 NA non-coding downstream 5469 34577317 ~ 34582503 (+)
G189580 NA non-coding downstream 14175 34586023 ~ 34676086 (+)
G189581 NA non-coding downstream 15075 34586923 ~ 34681853 (+)
G189549 NA non-coding downstream 19074 34590922 ~ 34591590 (+)
LOC120546694 NA non-coding downstream 24337 34596185 ~ 34607342 (+)
G189545 NA other upstream 7567 34549369 ~ 34552365 (+)
G189541 zdhhc14,LOC102790573,LOC102208331 other upstream 56177 34482864 ~ 34503755 (+)
G189570 NA other upstream 72755 34486424 ~ 34487177 (+)
G189544 NA other upstream 95035 34462908 ~ 34464897 (+)
LOC120546451 LOC103364258,LOC108444017 other upstream 104588 34378500 ~ 34455344 (+)
G189555 NA other downstream 15230 34587078 ~ 34607338 (+)
LOC120546652 NA other downstream 55630 34627478 ~ 34630935 (+)
G189582 NA other downstream 91167 34663015 ~ 34699491 (+)
LOC120546458 NA other downstream 231755 34803603 ~ 34827491 (+)
G189738 NA other downstream 437652 35009500 ~ 35010825 (+)

Expression


Co-expression Network