tdh (LOC108242421,LOC106524872,LOC104962272,LOC104922441)


Basic Information

Item Value
gene id tdh
gene name LOC108242421,LOC106524872,LOC104962272,LOC104922441
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17906741 ~ 17913030 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781825.1
AGCTTGAAGACGAAGCTGATGCAACACCGGCCGGAGTTAACACGGACATCGCGTCAGAGCGCTGAAGCTCAAAGGAGGAAGCCGCATCTTATCTTATTCTCAGAAAGCCAGTCAGACAGGAGTTTGCGCAGCTTATAGTCCTGAAGATTAACTGGTACCAGCATGCCTGTCATCAGAACCCTCAGTAAGGTGGCCAAGCAGGCCCTGCTCAGCACCCCGGGGTGCAGCTGCCAACCCCTAACAGTGGCTGTACGCAACATCAGCTTCTCCCCCCGGCAGGTGACTTCTGATGCCAGCTTCCACTCAGTGTCCTTCTCAGAAACAGACCACCCCAAGGTGCTTATCACAGGTGGCCTTGGGCAGCTCGGGGTGGGGCTCGCCAAATTGTTGAGAAAGAGGTTTGGAAAGAACAACGTCATTCTGTCTGACATCAGGAAACCTCCAAGCAACGTTTTCCACAGCGGCCCCTTCATCTACTCAGACATCCTGGACTACAAGAACCTACGGGAGATTGTGGTGAACAACCGCATCACTTGGCTGGTTCACTACAGCGCCCTCCTCAGTGCTGTTGGAGAGGCTAACGTGGCCCTGGCGCGCTCTGTAAACATCAACGGGCTTCACAACATCTTAGACATCGCCGCAGAGCACGGATTGCGTCTGTTTGTCCCGAGCACCATCGGTGCCTTTGGTCCCACTTCTCCCCGCAACCCTACGCCAGATCTCTGTGTGCAGAGACCTCGCACCATCTATGGTGTTTCAAAAGTCCATGCTGAGCTGATGGGAGAGTACTACCACCATCGTTATGGCCTGGACTTCCGCTGTCTCCGCTACCCTGGAATCATTTCTGCTGACTCCATGCCCGGGGGTGGCACAACAGACTATGCTGTCCAGATTTTCCACGATGCAATCAAAAGTGGCAAGTTTGAGTGCAACTTGAGACCCGACACACGGCTGCCCATGATGTACATTGACGACTGCCTGCGTGCCACGCTGGAGGTGATGGAGGCGCCAATTGACACGCTGAGCATGAGGACCTACAACATCAACGCCATGAGCTTCACCCCCGAGGAACTGGCCCAGGAGCTCCAGAAGCAGATGCCCGAGCTGGAGGTCACGTATGACGTTGACCACGTACGGCAGGCCATTGCTGACAGTTGGCCAATGAACTTCGACGACTCCAATGCACGGAAGGACTGGGGCTGGAAGCACGATTATGATCTTCCAGAGCTCGTCCAGACGATGCTTAACTTCTTCGGCGCCGAGACGCTCATGGCTCGTGCTAACTGATGGCGGACAGCGTTTGTTCTTTGTACATAATGTAAAGACTGACCAAAGAGAATAGAGTAACATGGCCTGTACATAGTCGTTCTCTCACTACTCTGTAAAATAAGAAGGGCTGTGCTTGCCTGGCATAAGGCTACCATTTCTCCAGAATGTAAAGGTCAGTGCAGGCTAGACAATCCTGCCTGCTCCTGTCTATCTACCCCTGATTTGCTCTTTTTGCTCATCCTTCTGCTTGGAGATTTGGGCAAAGAGCAGTCTGTCAGCAGTATCGGGGATAACAAGTGGCCTGTGAAAACTTGTTTGGATGTAATACAAGATGACTTGCATGTAGATCAATTGTGCAAAATTGTGCACTGTTGCAAAAATCAATTTAACAAAGTAAGAATGTTGCATTGTGTATTTGTGACCAGTTTTCCTTTGGAGATCCAAAGTTTTCTGCTACATTTCAAAAGGTTGTCCTGGGGCTTAAATCAAGTAACTTTGTATTGAGAGgtgtacaaacacacaagttGGGTCCTTGGATGCACTTTAGACAGATTCATATCTTAAAAGTACTGACAGGTAAATGAGTCTAATTACCTGTGTGGCGATTTCTGATACGGTGCATCTGTATTTCGAGCAGTGCAGAGCGATAATTCTTAAGAATTGTTCTTCTCTTTATTCCACGTTAACATTATTTATTCTGTCTGTTGGTGTTAAAACATGTGGGAGCTTCATCAAGTGAAAGCATTTCTTAACACTTTTGTTTCTAAGCGTTCCTCTCCacttttatgttattttattttttcatcaaCTCTAGTGGgattatttttaacacaaaagGAAAATGTGAAGCTGTATGCCACATTTATGTTTGGCCACATTTGGCGGTTTCTGTATGTCAACATTTTGTATAAGAAATGCTGAAAGTGGTTTCTATGTGAAAGTCTGTCCTTCAATAACACAATAAGCTTTGACAATAAAATATTTTCCACATA
>XM_039781826.1
ACGGTCAACCTGTTCTTGGCACTAGTTGTTTTCGTCTGCTTCTGTACGCCCTCTTTCCCTCATTGGCTCTCCCTGAAGGCAGGGTCGTATATATACTCTCAAGTTGCgctcttccttcctttttttggAAGCTCGCAGCTGTCTCGGTACCAGCATGCCTGTCATCAGAACCCTCAGTAAGGTGGCCAAGCAGGCCCTGCTCAGCACCCCGGGGTGCAGCTGCCAACCCCTAACAGTGGCTGTACGCAACATCAGCTTCTCCCCCCGGCAGGTGACTTCTGATGCCAGCTTCCACTCAGTGTCCTTCTCAGAAACAGACCACCCCAAGGTGCTTATCACAGGTGGCCTTGGGCAGCTCGGGGTGGGGCTCGCCAAATTGTTGAGAAAGAGGTTTGGAAAGAACAACGTCATTCTGTCTGACATCAGGAAACCTCCAAGCAACGTTTTCCACAGCGGCCCCTTCATCTACTCAGACATCCTGGACTACAAGAACCTACGGGAGATTGTGGTGAACAACCGCATCACTTGGCTGGTTCACTACAGCGCCCTCCTCAGTGCTGTTGGAGAGGCTAACGTGGCCCTGGCGCGCTCTGTAAACATCAACGGGCTTCACAACATCTTAGACATCGCCGCAGAGCACGGATTGCGTCTGTTTGTCCCGAGCACCATCGGTGCCTTTGGTCCCACTTCTCCCCGCAACCCTACGCCAGATCTCTGTGTGCAGAGACCTCGCACCATCTATGGTGTTTCAAAAGTCCATGCTGAGCTGATGGGAGAGTACTACCACCATCGTTATGGCCTGGACTTCCGCTGTCTCCGCTACCCTGGAATCATTTCTGCTGACTCCATGCCCGGGGGTGGCACAACAGACTATGCTGTCCAGATTTTCCACGATGCAATCAAAAGTGGCAAGTTTGAGTGCAACTTGAGACCCGACACACGGCTGCCCATGATGTACATTGACGACTGCCTGCGTGCCACGCTGGAGGTGATGGAGGCGCCAATTGACACGCTGAGCATGAGGACCTACAACATCAACGCCATGAGCTTCACCCCCGAGGAACTGGCCCAGGAGCTCCAGAAGCAGATGCCCGAGCTGGAGGTCACGTATGACGTTGACCACGTACGGCAGGCCATTGCTGACAGTTGGCCAATGAACTTCGACGACTCCAATGCACGGAAGGACTGGGGCTGGAAGCACGATTATGATCTTCCAGAGCTCGTCCAGACGATGCTTAACTTCTTCGGCGCCGAGACGCTCATGGCTCGTGCTAACTGATGGCGGACAGCGTTTGTTCTTTGTACATAATGTAAAGACTGACCAAAGAGAATAGAGTAACATGGCCTGTACATAGTCGTTCTCTCACTACTCTGTAAAATAAGAAGGGCTGTGCTTGCCTGGCATAAGGCTACCATTTCTCCAGAATGTAAAGGTCAGTGCAGGCTAGACAATCCTGCCTGCTCCTGTCTATCTACCCCTGATTTGCTCTTTTTGCTCATCCTTCTGCTTGGAGATTTGGGCAAAGAGCAGTCTGTCAGCAGTATCGGGGATAACAAGTGGCCTGTGAAAACTTGTTTGGATGTAATACAAGATGACTTGCATGTAGATCAATTGTGCAAAATTGTGCACTGTTGCAAAAATCAATTTAACAAAGTAAGAATGTTGCATTGTGTATTTGTGACCAGTTTTCCTTTGGAGATCCAAAGTTTTCTGCTACATTTCAAAAGGTTGTCCTGGGGCTTAAATCAAGTAACTTTGTATTGAGAGgtgtacaaacacacaagttGGGTCCTTGGATGCACTTTAGACAGATTCATATCTTAAAAGTACTGACAGGTAAATGAGTCTAATTACCTGTGTGGCGATTTCTGATACGGTGCATCTGTATTTCGAGCAGTGCAGAGCGATAATTCTTAAGAATTGTTCTTCTCTTTATTCCACGTTAACATTATTTATTCTGTCTGTTGGTGTTAAAACATGTGGGAGCTTCATCAAGTGAAAGCATTTCTTAACACTTTTGTTTCTAAGCGTTCCTCTCCacttttatgttattttattttttcatcaaCTCTAGTGGgattatttttaacacaaaagGAAAATGTGAAGCTGTATGCCACATTTATGTTTGGCCACATTTGGCGGTTTCTGTATGTCAACATTTTGTATAAGAAATGCTGAAAGTGGTTTCTATGTGAAAGTCTGTCCTTCAATAACACAATAAGCTTTGACAATAAAATATTTTCCACATA

Function

NR:

description
PREDICTED: L-threonine 3-dehydrogenase, mitochondrial-like

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0050662 obsolete coenzyme binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15789 TDH; threonine 3-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781825.1 True 2261 mRNA 0.48 9 17906741 17913030
XM_039781826.1 False 2253 mRNA 0.48 9 17907687 17913030

Neighbor

gene id symbol gene type direction distance location
mtmr9 mtmr9 coding upstream 2228 17888641 ~ 17904513 (+)
fam167ab fam167a,LOC102799533 coding upstream 98049 17800090 ~ 17808692 (+)
lca5 LOC104965141 coding upstream 106793 17791853 ~ 17799948 (+)
eya4 eya4 coding upstream 148327 17709799 ~ 17758414 (+)
LOC120546414 NA coding upstream 220242 17671513 ~ 17686499 (+)
pinx1 LOC102299901 coding downstream 6548 17919578 ~ 17949445 (+)
sox7 sox7 coding downstream 39529 17952559 ~ 17955598 (+)
LOC120546768 NA coding downstream 63083 17976113 ~ 17993998 (+)
blk blk,LOC102291483,LOC102797075 coding downstream 89040 18002070 ~ 18011951 (+)
atraid atraid coding downstream 260139 18173169 ~ 18177104 (+)
G185156 NA non-coding upstream 141949 17763969 ~ 17764792 (+)
G185155 rps12 non-coding upstream 143005 17760676 ~ 17763736 (+)
LOC120546941 NA non-coding upstream 218461 17686696 ~ 17688280 (+)
LOC120546942 NA non-coding upstream 235264 17669166 ~ 17671477 (+)
G185136 NA non-coding upstream 244928 17640961 ~ 17661813 (+)
G185254 NA non-coding downstream 144381 18057411 ~ 18059367 (+)
G185258 LOC104959833,LOC107082730,LOC103138645,LOC106923247,LOC106920026 non-coding downstream 189995 18103025 ~ 18104904 (+)
LOC120546825 NA non-coding downstream 242940 18155970 ~ 18164654 (+)
G185323 NA non-coding downstream 268102 18181132 ~ 18181983 (+)
G185353 NA non-coding downstream 384833 18297863 ~ 18298151 (+)
LOC120546940 NA other upstream 213107 17674393 ~ 17693634 (+)
G185145 LOC108242497,LOC106926748,LOC106945794 other upstream 220343 17669172 ~ 17686398 (+)
map7b map7,LOC107374525 other upstream 531682 17341837 ~ 17375059 (+)
G184996 sec63 other upstream 611040 17293654 ~ 17295701 (+)
G184859 NA other upstream 1073427 16825694 ~ 16833314 (+)
G185237 NA other downstream 3823 17916853 ~ 17917248 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other downstream 107926 18020956 ~ 18054926 (+)
znf513a znf513,LOC102795572 other downstream 214101 18127131 ~ 18140260 (+)
ylpm1 ylpm1 other downstream 685335 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 792826 18705856 ~ 18711994 (+)

Expression


Co-expression Network