col10a1b (col10a1,LOC104966941,LOC107384801)


Basic Information

Item Value
gene id col10a1b
gene name col10a1,LOC104966941,LOC107384801
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 2400734 ~ 2407155 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781876.1
GTGCCCTGGGAAGAGCAGCTGCCGCTTAGACAGACAGACTCCACAACTAAGGATATAACAGCGCAGTGCCGGGACAGCAGCCTCCCGACCCCCCCACTGTTTCTCTGGAGCGTAAACCTTAAGGTTTAGCTTCCCAAGATGGACCTGAGGGTAACGAGCGTTCTCCTCGTCCTCCTAGCTCTGGCTGAGGCGACCCCTTCAAGGCACTACCCAAAAGTCAGCAAGACTCCCTACCCCGTCAAGAGTCACGCTGTTGCAGGCCAGCCAGGTCCTCCAGGTCCTCCAGGTGAGCCAGGACCAATGGGACCATCTGGACCTCCTGGAAAGAGTGGCGTAGGGCATACTGGACCACCAGGTCCAGCAGGACCCCCCGGAGCTCCCGGCTACTCTCAAGCAGGTAAACCAGGTGCCCCAGGTGGTCATGGAAAACCAGGAAGCCCTGGAGCCCCTGGTGAGAGAGGTCTACCTGGTGCAACTGGAGCAATGGGTCCCAGAGGTGCACCTGGTCCACATGGAACACCTGGGCCTGCTGGAATTTCTTCTACTGGAAAACCTGGACCAGCTGGCATCCCTGGGCAAATGGGACCAAGAGGAGAGCCTGGTTTGAAGGGACATCCTGGTATTCCTGGCCTTCCTGGcgaaaaaggagagaaaggcaTTGGAGTTCCTGGGGTTCAGGGACCACCAGGTGCAATCGGACCAATGGGCCCAACTGGAATGCCTGGCAAACCTGGAGTTGGCATACCTGGTCACACTGGCTATCCTGGAGAACCTGGCAAGAGTGGCGAGCCAGGAAGAGATGGCGCTCCTGGGCCAATGGGTGCTCCAGGACCAAAGGGTCACACTGGGCCTCCAGGCACAGGAGCTCCTGGGAAAGCAGGCCAGAATGGTACCCCAGGAATGCCTGGACCTATGGGTGCTAAAGGTCCACAGGGTCCAGCTGGTCAGCCAGGCTCCCCTGGTATGCCAGGTGTTGGCAAAACGGGCGAACCTGGAATACCAGGTAGCAGAGGAGCCCCCGGTACTTCAGGAACCACTGGTCAAAAAGGAGAGCCAGGCCCAACTGGTTATACTGGTCAGCCAGGTGCTGTTGGTCCTATCGGCCCAGCTGGTCCACAGGGTGCAAGAGGATTCCAGGGTGAGGCAGGCCCACAGGGACCCAAAGGTGACACTGGTATGGTAGGTGCACCAGGCCCAAGGGGAACCAAGGGTGAACAGGGAGCTCAGGGTTTCAGTGGAAAACCAGGTGTCCCTGGGGCAGTAGGTCCTCCAGGAATTCCAGGGCATAATGGTCCTCAGGGTCAAAAGGGTGCACAAGGCCATGCTGGTAGCCCAGGACTTCCAGGTTCAAATGGTGGCCCAGGACCAAAAGGCCACACAGGCCCCCCAGGAGGAAATGGAAAAAGTGGTGAGAACGGAATGCCAGGACCCATGGGACCAGTTGGGCCACCTGGTCCAGCAGGTCCCGCTGGACTTAAGGGCCATCCAGGTCTTCCAGGCCCACCTGGCCCAGCTGGCATGACAGCTAAGGGAATTTCTGGTCCACAGGGTCCACCTGGAATTCCAGGTGCCAGAGGTCATGATGGTCAACCAGGCCCTGCCGGTCCTCCTGGTCGACCTGGCCCACCAGGAGAGGTGGTCTACCATCATGAAAAGAGCATGCCAATCAAGTCCCACGAGGTTGTGATGCCTCATGAGATGATGAAGGCCCCCATGTCCGCCTTCAGTGCTGTGCTGACCAGAGCCTACCCCCCAGCTGCAACCCCTATTCAGTTCAACCAGGTTCTGTACAATGGGGAGCAACATTATGATGAGCACAGTGGTGTGTTTACCTGCCAGATCCCAGGCCTCTACTATTTCAGCTATCATATGCATGTCAATGGTGCCAATGCATTGGTGGCCCTCTACAGAAATGATGAGCCAGTTATTTTCACCTATGATGAGTACAACAAAGGCTTCCTGGATCAGATGTCAGGCAGTACTGTCCTTATGCTGCATGCCGGTGACAGAATCTATGTCCAGGTCCCTGATGAGGAGAGTAACGGCATATTTGCAGCAGATAATGTTCACTGCTCTTTCTCTGGGTTCTTGATTGCCTCAACGTGATTTCACAAATCCAAATAAACCTCAAACCCTTACAAAACATTGAACTACTCAGAGAAATAGATCAGTTTATAAAATTCAAAATTGAGATTGTAGATTACAAAATATATATGGTTGTTATTTTAACTAGTTCAACTGTCAGATTCAAATCTTACAACaataaaatgtctttaattTGCTAACAATTGATTCGGCTGACAAAGGTATTCATGCTGagcaaaaaaagtataatatatagttcAGATTGATCCCTTTCCTCCAGTCCACCATGTGTGTGCctttgcaattttaaacattcattttttttttaaacattaaacaatATTGGAAGATATCTTAAGTGGTGCTTTACAACTGCCTGTAACATTTACAGCACGTCTTttacttgtgtttgtttttataatgtcTGTTGTTTAAGAATTTTCCTGTAATATACATACAAAAGACACTCAAAACTGTTGTACTATATGTATTAGAGATCAGCACATTCTCATAAGCACTGTGATCAGCAAAACAACACAGAATGAGAAATtcaaactgcattttttttttcaaaataactaGGCCTATGTCCCATGGATGTGTTAAGTTATGTACCACTTACTGACCAAAACACAGAATAAAAGTTCTAGtttgaaaaaggaaaata

Function

symbol description
col10a1 An extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in extracellular matrix organization. Located in collagen-containing extracellular matrix. Implicated in Schmid metaphyseal chondrodysplasia and osteochondrodysplasia.

NR:

description
PREDICTED: collagen alpha-1(X) chain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781876.1 True 2752 mRNA 0.51 3 2400734 2407155

Neighbor

gene id symbol gene type direction distance location
frk frk,LOC102794634 coding downstream 16649 2359433 ~ 2384085 (-)
LOC120546265 NA coding downstream 75456 2322664 ~ 2325278 (-)
LOC120547226 hs3st5,LOC102794156 coding downstream 236991 2035665 ~ 2163743 (-)
lama4 lama4 coding downstream 740176 1604943 ~ 1660558 (-)
tube1 tube1 coding downstream 823271 1540093 ~ 1577463 (-)
ufl1 ufl1,LOC104942535 coding upstream 183307 2590462 ~ 2613535 (-)
gja10b gja10 coding upstream 1233020 3640175 ~ 3644570 (-)
casp8ap2 NA coding upstream 1254398 3661553 ~ 3678597 (-)
ankrd6b ankrd6 coding upstream 1366015 3773170 ~ 3822913 (-)
LOC120547034 LOC104954367 coding upstream 1468005 3875160 ~ 3884613 (-)
G181684 NA non-coding downstream 124649 2275830 ~ 2276085 (-)
LOC120546179 NA non-coding downstream 209097 2187535 ~ 2191637 (-)
LOC120546180 NA non-coding downstream 213195 2187013 ~ 2187539 (-)
G181665 NA non-coding downstream 234744 2165704 ~ 2165990 (-)
G181633 NA non-coding downstream 451210 1945483 ~ 1949524 (-)
G181715 NA non-coding upstream 43540 2450695 ~ 2479367 (-)
G181724 NA non-coding upstream 90331 2497486 ~ 2499138 (-)
G181747 NA non-coding upstream 142352 2549507 ~ 2549932 (-)
G181751 NA non-coding upstream 150896 2558051 ~ 2561001 (-)
G181756 NA non-coding upstream 162670 2569825 ~ 2570232 (-)
G181297 NA other downstream 1761221 638810 ~ 639513 (-)
G181206 NA other downstream 2321424 57976 ~ 79310 (-)
G181196 NA other downstream 2351981 47081 ~ 48753 (-)
G181860 NA other upstream 968610 3375765 ~ 3376108 (-)
G181919 bach2 other upstream 1201692 3608847 ~ 3610329 (-)
srp9 srp9 other upstream 1484482 3891637 ~ 3893175 (-)
G182061 NA other upstream 1499462 3906617 ~ 3912279 (-)
G182059 NA other upstream 1501392 3908547 ~ 3914015 (-)

Expression


Co-expression Network