LOC120546734 (cd2ap)


Basic Information

Item Value
gene id LOC120546734
gene name cd2ap
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8251716 ~ 8340747 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781889.1
CATTAAACATTCCTCTCGCGGGACTGTCCTGGTTGAAACATCGCGAAGTTTCCTGCTATTTAGTATTTTGGTGGTGGTGGCAGCGGCAAGCCATAAGCAACGAAAGTCCAAGTCCAAGAAAGGTGGAGACTCCTGGTTAACTTCCTGCCCAATACTGTTGAAGCACCACCAAGAGAGAACTGGGGACGCTGCTGCTGAGGCtgctttctgctgctgctgctgctggggctgCTGCTGGGGCAAGGACGAATGGATATACCGCTCACTTTAATAGTTTTCCGGCAGTGAATCGACTAAAAACACTTTGTTGTTGATTGTACACCTACTTGGCTAGACGGAAGCTAGCAGTGAGGCTGTACGAGATTCCAAACATTGGATAGCGAGGCGGTGCGAAGACAGGAATGGAGGTCGTGGTGGAGTATGAGTACGAGGCGCTCCATGAAGACGAGCTGACGCTGCGACTGGGTGACATCATCAAGAACGTGCGGTACATAGAGGAGGATGGCTGGATGGAGGGAGACCTTAACGGGAAAAGGGGCCTCTTCCCCGACAACTTTGTCAAGGAACTGAAGAAGGAATCCAAAGAGGTCAAGGAAACAAAGAATGAGCCCAAAGAGGAGGCCTCTCATCctcagaagagagagaagagtgcaGGAAACGTGGCCAACCTGGTTCAGAGGATGAGCTTTATCGGCATCCCGACTGGTGGCTTCCTGCCTCAGCCGCCAGCAGCTGCAAAGAAGCCTAAGAAGAGACAGTGCAAGGCTCTCTTTGACTATCAGCCGCAGAACGAAGATGAGCTGGAGCTGAAAGCCGGAGACATCATAGACATCACTGAAGAGGTTGAAGAGGGCTGGTGGAGCGGCGACTTGAACGGCAAGTCAGGACTGTTTCCCTCCAACTTCGTCAAAGAGCTGGACGCCACGGGAGAGGACGGCGAGTCCAACGACACGGCGGCAGATGAGACGGATGGAAGTGGAATGGAAAGCGTCCCCACCCCCACATCCCCTCAACCTGCCTCAGGGAACGGAGTCATAGCTCAGCCCAAGAAGATCCGAGGCGTTGGCTTCGGAGATATTTTCAGAGAAGGGTCGGTCAAACTAAAGGCCCGGCTGCCAAGCTCCGAAACCGAGGAAAAGAAGGCGAGACCAATCCCATCATTACCATCTGCTGCAAAGCCCGCCCATCCCAACGTGACCGACTCGCAGAGAGCAGACGGAGACAGCAAATCCAAAGCAAAAGAGTACTGTAAGGTCACATTTGCTTTTGAGGCTACAAATGAGGATGAGCTGACCATAAAAGAGGGCGATATCATCCACATCCTGAGCAAGGACACAGGAGAGCCCGGCTGGTGGCGAGGGGAGATCGGGGGCAGGGAGGGTGTCTTCCCTGACAACTTTGTAGCCATGGTGACTGATGCAGAGAAAGAGACGCCCACGTCGAGAATGTCACTGAGATCATCTCCCAAGCAGGAGTCTGAAGAGAAGCCGAAGAAGCCACCTCCACCATCAAAAAGCATAGCTCCCAAGCCGGAGGTTCCCAGTGCCGACAAGAAGCCGGTTCCCATCATGCCAGAGTACAAAGTTGACAAACCGACCCCAGATCACAAACCATCCAAGCCTGCAGCGCCTTTGGTCCCGCCTAAGAAGCCGGTCCCCCCTCCTGGGAAAGGCAGGCCAGGTAGCATCCCACCAAAGAGGCCAGACAAGCCTCTTGCTCCCTCGCCAAGCCTCAAGCACAATGGAGAGGTGCCTTCCACACGACCAAAGTTAGACTTTGAGCCATCATTGCCCCCCAAACCCAAAACTCTGTCTGGGGACTGGGCGGAGAAGTCTTCGGATGTGGATCTGATGAGTTTTGATGAGTTGTCGTCTACCTCGGAGAAGCTCTCTCACCCCACTGCTAACAGACCAAAGATGCCTGGCAGGAGGCTACCCGCCCAGTTTGGTGGAGCACAATCGCCCAACAAGGAAGTGAACGTGGAGAAATCCTTCAAGGTTGATGAAGAGGATGCTGCCAAACCAAAACTAACAGAAACCAGAAAGCCTTCCACAAACACGTTATCCCAGTCACCGTCACCCCACAGGCCCGCCACGGCCAGCACCGAGGCCAAGCCGAGCCCTGCAGCAACCCCAAGCTCAGACAGCGCGTCGCAGGCTAGCAGGACCCGGCTGGAGCCCGAAGAGCCGAACTCGGAGCTGGACGAGCTGAAGAGCCAGATGAAGGATCTGCTGCTGTCTGTGGAGCTGCTCAAGGCCCAGCAAATGAAAGAGATATCGGAGCTACGAGGAGAGCTGGATGAGGAAAGGCTGAAGCGTGTTGCTCTGCAGATGGAGATAGAAAAACTGAAGCGGACCATCCACTCGACGTGAAGCCCGCAGTCGGCTGCTGGGCTGTCGACCAACCGGCGGTGACGGACGGATCGCTGAATGGG
>XM_039781890.1
TTCCATTAAACATTCCTCTCGCGGGACTGTCCTGGTTGAAACATCGCGAAGTTTCCTGCTATTTAGTATTTTGGTGGTGGTGGCAGCGGCAAGCCATAAGCAACGAAAGTCCAAGTCCAAGAAAGGTGGAGACTCCTGGTTAACTTCCTGCCCAATACTGTTGAAGCACCACCAAGAGAGAACTGGGGACGCTGCTGCTGAGGCtgctttctgctgctgctgctgctggggctgCTGCTGGGGCAAGGACGAATGGATATACCGCTCACTTTAATAGTTTTCCGGCAGTGAATCGACTAAAAACACTTTGTTGTTGATTGTACACCTACTTGGCTAGACGGAAGCTAGCAGTGAGGCTGTACGAGATTCCAAACATTGGATAGCGAGGCGGTGCGAAGACAGGAATGGAGGTCGTGGTGGAGTATGAGTACGAGGCGCTCCATGAAGACGAGCTGACGCTGCGACTGGGTGACATCATCAAGAACGTGCGGTACATAGAGGAGGATGGCTGGATGGAGGGAGACCTTAACGGGAAAAGGGGCCTCTTCCCCGACAACTTTGTCAAGGAACTGAAGAAGGAATCCAAAGAGGTCAAGGAAACAAAGAATGAGCCCAAAGAGGAGGCCTCTCATCctcagaagagagagaagagtgcaGGAAACGTGGCCAACCTGGTTCAGAGGATGAGCTTTATCGGCATCCCGACTGGTGGCTTCCTGCCTCAGCCGCCAGCAGCTGCAAAGAAGCCTAAGAAGAGACAGTGCAAGGCTCTCTTTGACTATCAGCCGCAGAACGAAGATGAGCTGGAGCTGAAAGCCGGAGACATCATAGACATCACTGAAGAGGTTGAAGAGGGCTGGTGGAGCGGCGACTTGAACGGCAAGTCAGGACTGTTTCCCTCCAACTTCGTCAAAGAGCTGGACGCCACGGGAGAGGACGGCGAGTCCAACGACACGGCGGCAGATGAGACGGATGGAAGTGGAATGGAAAGCGTCCCCACCCCCACATCCCCTCAACCTGCCTCAGGGAACGGAGTCATAGCTCAGCCCAAGAAGATCCGAGGCGTTGGCTTCGGAGATATTTTCAGAGAAGGGTCGGTCAAACTAAAGGCCCGGCTGCCAAGCTCCGAAACCGAGGAAAAGAAGGCGAGACCAATCCCATCATTACCATCTGCTGCAAAGCCCGCCCATCCCAACGTGACCGACTCGCAGAGAGCAGACGGAGACAGCAAATCCAAAGCAAAAGAGTACTGTAAGGTCACATTTGCTTTTGAGGCTACAAATGAGGATGAGCTGACCATAAAAGAGGGCGATATCATCCACATCCTGAGCAAGGACACAGGAGAGCCCGGCTGGTGGCGAGGGGAGATCGGGGGCAGGGAGGGTGTCTTCCCTGACAACTTTGTAGCCATGGTGACTGATGCAGAGAAAGAGACGCCCACGTCGAGAATGTCACTGAGATCATCTCCCAAGCAGGAGTCTGAAGAGCCGAAGAAGCCACCTCCACCATCAAAAAGCATAGCTCCCAAGCCGGAGGTTCCCAGTGCCGACAAGAAGCCGGTTCCCATCATGCCAGAGTACAAAGTTGACAAACCGACCCCAGATCACAAACCATCCAAGCCTGCAGCGCCTTTGGTCCCGCCTAAGAAGCCGGTCCCCCCTCCTGGGAAAGGCAGGCCAGGTAGCATCCCACCAAAGAGGCCAGACAAGCCTCTTGCTCCCTCGCCAAGCCTCAAGCACAATGGAGAGGTGCCTTCCACACGACCAAAGTTAGACTTTGAGCCATCATTGCCCCCCAAACCCAAAACTCTGTCTGGGGACTGGGCGGAGAAGTCTTCGGATGTGGATCTGATGAGTTTTGATGAGTTGTCGTCTACCTCGGAGAAGCTCTCTCACCCCACTGCTAACAGACCAAAGATGCCTGGCAGGAGGCTACCCGCCCAGTTTGGTGGAGCACAATCGCCCAACAAGGAAGTGAACGTGGAGAAATCCTTCAAGGTTGATGAAGAGGATGCTGCCAAACCAAAACTAACAGAAACCAGAAAGCCTTCCACAAACACGTTATCCCAGTCACCGTCACCCCACAGGCCCGCCACGGCCAGCACCGAGGCCAAGCCGAGCCCTGCAGCAACCCCAAGCTCAGACAGCGCGTCGCAGGCTAGCAGGACCCGGCTGGAGCCCGAAGAGCCGAACTCGGAGCTGGACGAGCTGAAGAGCCAGATGAAGGATCTGCTGCTGTCTGTGGAGCTGCTCAAGGCCCAGCAAATGAAAGAGATATCGGAGCTACGAGGAGAGCTGGATGAGGAAAGGCTGAAGCGTGTTGCTCTGCAGATGGAGATAGAAAAACTGAAGCGGACCATCCACTCGACGTGAAGCCCGCAGTCGGCTGCTGGGCTGTCGACCAACCGGCGGTGACGGACGGATCGCTGAATGGG
>XM_039781892.1
TGGTGTTGTCGCTGAAGCGATCGGGCGGAATGAAACATGTCTGGGGGGGAGATGGAACTGAAGAAGGAATCCAAAGAGGTCAAGGAAACAAAGAATGAGCCCAAAGAGGAGGCCTCTCATCctcagaagagagagaagagtgcaGGAAACGTGGCCAACCTGGTTCAGAGGATGAGCTTTATCGGCATCCCGACTGGTGGCTTCCTGCCTCAGCCGCCAGCAGCTGCAAAGAAGCCTAAGAAGAGACAGTGCAAGGCTCTCTTTGACTATCAGCCGCAGAACGAAGATGAGCTGGAGCTGAAAGCCGGAGACATCATAGACATCACTGAAGAGGTTGAAGAGGGCTGGTGGAGCGGCGACTTGAACGGCAAGTCAGGACTGTTTCCCTCCAACTTCGTCAAAGAGCTGGACGCCACGGGAGAGGACGGCGAGTCCAACGACACGGCGGCAGATGAGACGGATGGAAGTGGAATGGAAAGCGTCCCCACCCCCACATCCCCTCAACCTGCCTCAGGGAACGGAGTCATAGCTCAGCCCAAGAAGATCCGAGGCGTTGGCTTCGGAGATATTTTCAGAGAAGGGTCGGTCAAACTAAAGGCCCGGCTGCCAAGCTCCGAAACCGAGGAAAAGAAGGCGAGACCAATCCCATCATTACCATCTGCTGCAAAGCCCGCCCATCCCAACGTGACCGACTCGCAGAGAGCAGACGGAGACAGCAAATCCAAAGCAAAAGAGTACTGTAAGGTCACATTTGCTTTTGAGGCTACAAATGAGGATGAGCTGACCATAAAAGAGGGCGATATCATCCACATCCTGAGCAAGGACACAGGAGAGCCCGGCTGGTGGCGAGGGGAGATCGGGGGCAGGGAGGGTGTCTTCCCTGACAACTTTGTAGCCATGGTGACTGATGCAGAGAAAGAGACGCCCACGTCGAGAATGTCACTGAGATCATCTCCCAAGCAGGAGTCTGAAGAGAAGCCGAAGAAGCCACCTCCACCATCAAAAAGCATAGCTCCCAAGCCGGAGGTTCCCAGTGCCGACAAGAAGCCGGTTCCCATCATGCCAGAGTACAAAGTTGACAAACCGACCCCAGATCACAAACCATCCAAGCCTGCAGCGCCTTTGGTCCCGCCTAAGAAGCCGGTCCCCCCTCCTGGGAAAGGCAGGCCAGGTAGCATCCCACCAAAGAGGCCAGACAAGCCTCTTGCTCCCTCGCCAAGCCTCAAGCACAATGGAGAGGTGCCTTCCACACGACCAAAGTTAGACTTTGAGCCATCATTGCCCCCCAAACCCAAAACTCTGTCTGGGGACTGGGCGGAGAAGTCTTCGGATGTGGATCTGATGAGTTTTGATGAGTTGTCGTCTACCTCGGAGAAGCTCTCTCACCCCACTGCTAACAGACCAAAGATGCCTGGCAGGAGGCTACCCGCCCAGTTTGGTGGAGCACAATCGCCCAACAAGGAAGTGAACGTGGAGAAATCCTTCAAGGTTGATGAAGAGGATGCTGCCAAACCAAAACTAACAGAAACCAGAAAGCCTTCCACAAACACGTTATCCCAGTCACCGTCACCCCACAGGCCCGCCACGGCCAGCACCGAGGCCAAGCCGAGCCCTGCAGCAACCCCAAGCTCAGACAGCGCGTCGCAGGCTAGCAGGACCCGGCTGGAGCCCGAAGAGCCGAACTCGGAGCTGGACGAGCTGAAGAGCCAGATGAAGGATCTGCTGCTGTCTGTGGAGCTGCTCAAGGCCCAGCAAATGAAAGAGATATCGGAGCTACGAGGAGAGCTGGATGAGGAAAGGCTGAAGCGTGTTGCTCTGCAGATGGAGATAGAAAAACTGAAGCGGACCATCCACTCGACGTGAAGCCCGCAGTCGGCTGCTGGGCTGTCGACCAACCGGCGGTGACGGACGGATCGCTGAATGGG

Function

symbol description
cd2ap Acts upstream of or within glomerular filtration and pronephric glomerulus development. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis and focal segmental glomerulosclerosis 3. Orthologous to human CD2AP (CD2 associated protein).

NR:

description
PREDICTED: CD2-associated protein isoform X4

GO: NA

KEGG:

id description
K13738 CD2AP; CD2-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781889.1 False 2434 mRNA 0.55 19 8251716 8340744
XM_039781890.1 True 2434 mRNA 0.55 19 8251716 8340747
XM_039781892.1 False 1925 mRNA 0.56 18 8251716 8306809

Neighbor

gene id symbol gene type direction distance location
cnih3 cnih3,LOC108248696,LOC101155158,LOC107095392,LOC106527994,LOC107384796,LOC100708389,LOC103358879,LOC101472542 coding downstream 663651 7444861 ~ 7588065 (-)
meis2b LOC104938729,LOC103355645,LOC105017579 coding downstream 1450923 6762711 ~ 6800793 (-)
LOC120546794 NA coding downstream 1786914 6462940 ~ 6464802 (-)
LOC120546792 LOC104959018 coding downstream 2178496 6070546 ~ 6073220 (-)
gopc gopc coding downstream 2242276 5986437 ~ 6009440 (-)
LOC120546378 NA coding upstream 208432 8549179 ~ 8550180 (-)
LOC120546379 LOC103375580 coding upstream 217722 8558469 ~ 8559470 (-)
LOC120546380 NA coding upstream 224396 8565143 ~ 8566141 (-)
LOC120546382 NA coding upstream 231656 8572403 ~ 8573320 (-)
LOC120546383 NA coding upstream 246595 8587342 ~ 8588259 (-)
G183013 NA non-coding downstream 5951 8245565 ~ 8245765 (-)
G183006 NA non-coding downstream 60242 8191178 ~ 8191474 (-)
G182983 NA non-coding downstream 203778 8047500 ~ 8047938 (-)
G182980 NA non-coding downstream 209912 8040623 ~ 8041804 (-)
G182962 NA non-coding downstream 398115 7852984 ~ 7853601 (-)
G183027 NA non-coding upstream 90615 8431362 ~ 8431674 (-)
G183042 NA non-coding upstream 138165 8478912 ~ 8479346 (-)
G183068 NA non-coding upstream 430541 8771288 ~ 8771585 (-)
G183136 NA non-coding upstream 657828 8998575 ~ 8998828 (-)
LOC120546288 NA non-coding upstream 757624 9098371 ~ 9099326 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other downstream 125052 8049458 ~ 8126664 (-)
G182977 NA other downstream 226672 8024715 ~ 8025044 (-)
G182952 NA other downstream 485330 7761565 ~ 7766386 (-)
G182764 NA other downstream 1550599 6700491 ~ 6701117 (-)
cgrrf1 NA other downstream 1982573 6232742 ~ 6269143 (-)
LOC120546397 NA other upstream 440581 8781328 ~ 8787218 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other upstream 680213 9020960 ~ 9024565 (-)
G183176 NA other upstream 788826 9129573 ~ 9133472 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other upstream 1758731 10099478 ~ 10101061 (-)
LOC120546776 NA other upstream 2114497 10455244 ~ 10610625 (-)

Expression


Co-expression Network