mrps18a (mrps18a,LOC102788828)


Basic Information

Item Value
gene id mrps18a
gene name mrps18a,LOC102788828
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16609864 ~ 16613070 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781928.1
TCGCGAGATTACCAGACAGGAAAGTAAAGGTCAGGAATTAAACATGGCAGCTCGCAGTATGTTGAGGTCTGTGTGGACCTCAATTGCGGGCTTGAAATTAGGTGCCACTGGTACCAACGTGAAGGTTCAACGGAGGATAAATGTTTTCCAGCTACCGACTTTAACCATTCAGAGCAGAGGGATCCGACAAGTGGTGGAGAAGCAGGAGggtaaaacaacaacaATTGAGGGAGAAATACTGAATAttgcagcaggaccacagccTCCAAACCCCACAGCCAAGTGTCCTATCTACAGATGGAACCTGCAGCACAAATACAACTACACTGATGTCTTGTTGCTCAGTCAGTTCATCAGGTCAGATGGAGGCTTGTTGCCTAGGAGaatcactggtctctgtccagaggAACATCGTAAGATTGCCATGTGTGTTCAGATGGCTCACAGAGCAGGTCTGCTCCCTGACCACAAACCCAAACTTCCGGAGGGCCATGTCCCAAAGAGGCCCAAACCCCAACTTAACAGATACCTGACTCGCTGGTCCATTGACTCTGTGAAACCAATATATAAAACCGGACTAAAGTGGTGTAAGAAGCGCATGGCTGTTGGCCACCCAGTACTCAAGGACAACCTGCGTTATGGTGTCAAGCCCCTTTACACAAAACACTGAAGGACAGAAAGCCTGATGAATCAGTGCAGCAGCTTGACAGAAGTGGGTGGGCGCATTTTTATCCGATGAGTTTCAAGTGGATTACATTTTGTCATACTGCCCTGGGAAAAGGCCTAAAAGCTTCATCCATCTGTATTTATTCTACCTTTTTGTTTATTAAGCTGTCATCCTTTTGATAAGGCATGCTCAGCCCCACCCAGAACCATCTATTCTGTCTCTGCTGGTTTATAAAAAAAGCCCTTGAAGTGAACTCTCTGACAACTTAATGTGAGCAACAACTGGGACCGCAACACAGATGTGCAaataaattgtgtgtgtttactctgcc

Function

symbol description
mrps18a Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS18A (mitochondrial ribosomal protein S18A).

NR:

description
39S ribosomal protein S18a, mitochondrial-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02963 RP-S18, MRPS18, rpsR; small subunit ribosomal protein S18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781928.1 True 998 mRNA 0.46 6 16609864 16613070

Neighbor

gene id symbol gene type direction distance location
pou3f2a LOC100689997,LOC102789413,LOC101473289,LOC102290139,LOC103363798 coding downstream 48853 16558797 ~ 16561011 (-)
ngs NA coding downstream 82291 16523703 ~ 16527573 (-)
LOC120546560 NA coding downstream 122925 16483296 ~ 16486939 (-)
elovl4b elovl4 coding downstream 182983 16418550 ~ 16426881 (-)
LOC120547269 soga3,LOC102312356,LOC102202636,LOC101478077 coding downstream 194667 16409299 ~ 16415197 (-)
naga naga,LOC104944830,LOC101471811 coding upstream 107454 16720524 ~ 16728437 (-)
si:ch211-57i17.5 LOC101467041,LOC102294206,LOC104964595 coding upstream 169979 16783049 ~ 16784901 (-)
LOC120547035 esrrg,LOC100695726,LOC102786194,LOC102294499 coding upstream 179368 16792438 ~ 16823065 (-)
itsn2a itsn2 coding upstream 267725 16880795 ~ 16919678 (-)
LOC120546412 NA coding upstream 299652 16912722 ~ 16933375 (-)
LOC120546751 NA non-coding downstream 3947 16596771 ~ 16605917 (-)
G184801 NA non-coding downstream 74545 16450754 ~ 16535319 (-)
G184813 NA non-coding downstream 86165 16522734 ~ 16523699 (-)
G184762 NA non-coding downstream 175351 16434101 ~ 16434513 (-)
G184755 NA non-coding downstream 227385 16379445 ~ 16382479 (-)
G184869 NA non-coding upstream 60518 16673588 ~ 16675507 (-)
G184877 NA non-coding upstream 96685 16709755 ~ 16762688 (-)
LOC120547094 NA non-coding upstream 97965 16711035 ~ 16716317 (-)
G184897 NA non-coding upstream 159651 16772721 ~ 16774271 (-)
G184903 NA non-coding upstream 211226 16824296 ~ 16824597 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other downstream 91990 16490650 ~ 16517874 (-)
LOC120546332 akap7 other downstream 421534 16146590 ~ 16188330 (-)
LOC120546224 NA other downstream 541555 16065854 ~ 16068309 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other downstream 814226 15788826 ~ 15795638 (-)
rps29 NA other downstream 1498385 15110240 ~ 15111479 (-)
gpatch2 gpatch2,LOC102785715 other upstream 212582 16825652 ~ 16835983 (-)
LOC120547341 NA other upstream 653289 17266359 ~ 17269634 (-)
tbpl1 tbpl1 other upstream 1010054 17623124 ~ 17631351 (-)
zgc:153284 NA other upstream 1151735 17764805 ~ 17766910 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other upstream 1298200 17911270 ~ 17913036 (-)

Expression


Co-expression Network