opn8c


Basic Information

Item Value
gene id opn8c
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23144908 ~ 23151382 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781936.1
caaatatctgtacttctacttgaatacgggaagtgagtacttttgccatctttGGCGGTAGGTGGTGGTTGGGAGTATTTAGGCCTTTTACCATTCTTGTACagcaaacagaaaatatttttttctattatgATACTCATTTTGCGCGCACACACAGCGCatacatggaaaaatatatataatttacagGATCTAATCCAAATAATTGGAGGTTAAACTCGCTATTTTTGGCCTATTCAAGCATTCAGTGTTACTTCCTCACCCATCAGACCGGTATCCTGTCCGTTTGTCGCCTCTGGGACTCCGTACCTCCTGAAGGAGCAACACCTTTTCCTCCAGAGAGTTCAAAAGCACGCGCGCGGCGCCTCCATGCGTTTCACGGTTAGCTCGCGCTGTGAATTGCCATGGTGACACACCCGCCTGCATAAAAGCCTCCGTGCACACATCTCACTTTGTGAGTCCGGATTTTAGCCGTGACAACATCGTCACAAACGGCTCAATGGCTCTGAACTCCTCTGGAGACAACCGGACCGTCTCTGCCTTCACCTCCAAACTGACCCCAGCGGCTGACATATGTGTGGGACTGGTCATCCTCTTCGTCGttctgctctctgttctAGGCAATGGACTGGTTCTGGTGATTTGTTACCGCAGGAGGAAGAAGATGGTGGGCTCAGAGCTGCTGTGCGTCAACCTGGCCGTGGTCGACTTCCTCTGCTGCATCTGCTTCTACCCGCTCTCCATCCTGTCCTCTTTCCACCATGGCTGGCTGGGAGAAAACATCACATGTGTTTACTACGGCCTCGGCTGCTACATCTTTGGCCTGTGTGGCATGTTCACCATCGCCGCCATCAGCATAATCCGCTACCTGAAGACCTGCCACAGATCGGTTTACgCTGTGTGGCTGAAAGGACCTAACATCAAGATAGCGTGCTGTTCCACCTGGCTCATCGCTGCTGTGTGGTCCAGCTTCCCTCTGTTTGGCTGGGGCGAGTACGTCCCTGAGCCGTACGGACTGTCGTGCACCGTCGCCTGGAGGGGTTATCATACCTCAGCCAAAGATGCTTTCTATGTCATCTGCTCCTTCGCCTGCTTCACAATGGTTCCTATCCTCCTCATCGTGGTGTCCCAGTGTCAGATCCTCTACGAGGTGTCTCGCTTCTCCCACTTGCTGTCTGCGAGACACATCCGCAACAACTTGCGATATGCTGAAAAACAACTGTCCGTGATGTTTTTCTGCATCAGCCTGGGTTTTATAATTGCCTGGGCGCCGTACACTATTGTGTCCTTCCTCTTCATTTTCCACAAGGGGAGCCAGTACATGGCTCCTGAGAGCTTTGTGTTCCCCGCCCTCTTCGCCAAAAGCTCCCACATCTACAACCCGTTCAtctacttttactttaacaaGCTTTTCCAAAAGGAGCTTCGCTGCCTGCTCCTCTCTTTCTGGCCCAGGTCGGGAGGAAACCAAGTGGGCGTCGACATTGCCGAAGTCCACCAATATCCCATCCACATTCAGCTCCAGGAAAGAGGCTGCGTCCAAAAGAAGAATGTTGATTTATCTCGGGTCATAACTCACAGCAAGAGCAagagcaaagaaaaagaaaaagaaaaagacaaagaatcGCACGCCAACAGCAATCATGTCCTGAGCAGGCCGGTGTATGCCTGCTGGGGGACCACAGCGAAGAATGCCCCCACCATCTAGGACAATAAACCTGCCAAAGgcaccctgtctgtctctctatgaACTCTGACTGTCACTGTCAGTGTCGATACAGAGACaggtacggtggccctgaaggtcaaaacacaaaagcatttCACAAAACACTCtgaaatttcacaaaactgaACAACATTTCAccaaacacaacagcaaagCAAATAACAAAACGGCATTTGGTGAGACCCAAACCAGAAAAGGTAGGTACGTGTTGGACAATGATTCCTTGTTGCTGATTGGATGCACTGGCTGTCAGTCTGTGACAAACTGaaattcttctttttcttttggatttaaatgtacattgtgtaattttttgagttgattcttagcaaaaacccctttgttctttcacaaatatgtactcattcatgtgtaattacttccaccaactaatcaaagtattctcgtaagcgtggaatctgacattcagaatacatacgggCGAGTTGCTCGAATGACGGCCcgcatgttgcgcctccatctttaaaatacattagccaaagagggccatacctccgcatt
>XM_039781937.1
caaatatctgtacttctacttgaatacgggaagtgagtacttttgccatctttGGCGGTAGGTGGTGGTTGGGAGTATTTAGGCCTTTTACCATTCTTGTACagcaaacagaaaatatttttttctattatgATACTCATTTTGCGCGCACACACAGCGCatacatggaaaaatatatataatttacagGATCTAATCCAAATAATTGGAGGTTAAACTCGCTATTTTTGGCCTATTCAAGCATTCAGTGTTACTTCCTCACCCATCAGACCGGTATCCTGTCCGTTTGTCGCCTCTGGGACTCCGTACCTCCTGAAGGAGCAACACCTTTTCCTCCAGAGAGTTCAAAAGCACGCGCGCGGCGCCTCCATGCGTTTCACGGTTAGCTCGCGCTGTGAATTGCCATGGTGACACACCCGCCTGCATAAAAGCCTCCGTGCACACATCTCACTTTGTGAGTCCGGATTTTAGCCGTGACAACATCGTCACAAACGGCTCAATGGCTCTGAACTCCTCTGGAGACAACCGGACCGTCTCTGCCTTCACCTCCAAACTGACCCCAGCGGCTGACATATGTGTGGGACTGGTCATCCTCTTCGTCGGCAATGGACTGGTTCTGGTGATTTGTTACCGCAGGAGGAAGAAGATGGTGGGCTCAGAGCTGCTGTGCGTCAACCTGGCCGTGGTCGACTTCCTCTGCTGCATCTGCTTCTACCCGCTCTCCATCCTGTCCTCTTTCCACCATGGCTGGCTGGGAGAAAACATCACATGTGTTTACTACGGCCTCGGCTGCTACATCTTTGGCCTGTGTGGCATGTTCACCATCGCCGCCATCAGCATAATCCGCTACCTGAAGACCTGCCACAGATCGGTTTACgCTGTGTGGCTGAAAGGACCTAACATCAAGATAGCGTGCTGTTCCACCTGGCTCATCGCTGCTGTGTGGTCCAGCTTCCCTCTGTTTGGCTGGGGCGAGTACGTCCCTGAGCCGTACGGACTGTCGTGCACCGTCGCCTGGAGGGGTTATCATACCTCAGCCAAAGATGCTTTCTATGTCATCTGCTCCTTCGCCTGCTTCACAATGGTTCCTATCCTCCTCATCGTGGTGTCCCAGTGTCAGATCCTCTACGAGGTGTCTCGCTTCTCCCACTTGCTGTCTGCGAGACACATCCGCAACAACTTGCGATATGCTGAAAAACAACTGTCCGTGATGTTTTTCTGCATCAGCCTGGGTTTTATAATTGCCTGGGCGCCGTACACTATTGTGTCCTTCCTCTTCATTTTCCACAAGGGGAGCCAGTACATGGCTCCTGAGAGCTTTGTGTTCCCCGCCCTCTTCGCCAAAAGCTCCCACATCTACAACCCGTTCAtctacttttactttaacaaGCTTTTCCAAAAGGAGCTTCGCTGCCTGCTCCTCTCTTTCTGGCCCAGGTCGGGAGGAAACCAAGTGGGCGTCGACATTGCCGAAGTCCACCAATATCCCATCCACATTCAGCTCCAGGAAAGAGGCTGCGTCCAAAAGAAGAATGTTGATTTATCTCGGGTCATAACTCACAGCAAGAGCAagagcaaagaaaaagaaaaagaaaaagacaaagaatcGCACGCCAACAGCAATCATGTCCTGAGCAGGCCGGTGTATGCCTGCTGGGGGACCACAGCGAAGAATGCCCCCACCATCTAGGACAATAAACCTGCCAAAGgcaccctgtctgtctctctatgaACTCTGACTGTCACTGTCAGTGTCGATACAGAGACaggtacggtggccctgaaggtcaaaacacaaaagcatttCACAAAACACTCtgaaatttcacaaaactgaACAACATTTCAccaaacacaacagcaaagCAAATAACAAAACGGCATTTGGTGAGACCCAAACCAGAAAAGGTAGGTACGTGTTGGACAATGATTCCTTGTTGCTGATTGGATGCACTGGCTGTCAGTCTGTGACAAACTGaaattcttctttttcttttggatttaaatgtacattgtgtaattttttgagttgattcttagcaaaaacccctttgttctttcacaaatatgtactcattcatgtgtaattacttccaccaactaatcaaagtattctcgtaagcgtggaatctgacattcagaatacatacgggCGAGTTGCTCGAATGACGGCCcgcatgttgcgcctccatctttaaaatacattagccaaagagggccatacctccgcatt

Function

NR:

description
opsin-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781936.1 True 2251 mRNA 0.48 4 23144908 23151382
XM_039781937.1 False 2233 mRNA 0.48 4 23144908 23151382

Neighbor

gene id symbol gene type direction distance location
rhag LOC100174886 coding upstream 185649 22945509 ~ 22959259 (+)
nrbp1 LOC100699297,LOC102778226,LOC102314540,LOC103372645 coding upstream 242419 22892172 ~ 22902489 (+)
znf106b NA coding upstream 269694 22860808 ~ 22875214 (+)
ttbk2b LOC103372651,LOC104945868 coding upstream 288333 22848098 ~ 22856575 (+)
zpax1 NA coding upstream 349545 22790720 ~ 22795363 (+)
tagapb NA coding downstream 8645 23160027 ~ 23186726 (+)
ezrb ezr,LOC103355633 coding downstream 47452 23198834 ~ 23237172 (+)
LOC120546473 NA coding downstream 95617 23246999 ~ 23253449 (+)
kcnk3a kcnk3,LOC102784354 coding downstream 156341 23307723 ~ 23348356 (+)
slc35f6 slc35f6 coding downstream 220502 23371884 ~ 23381214 (+)
G186726 NA non-coding upstream 618 23143959 ~ 23144290 (+)
G186725 NA non-coding upstream 1260 23143430 ~ 23143648 (+)
G186697 NA non-coding upstream 126108 23016957 ~ 23018800 (+)
G186641 NA non-coding upstream 297234 22846872 ~ 22847674 (+)
G186622 NA non-coding upstream 344850 22799735 ~ 22800058 (+)
G186747 NA non-coding downstream 117416 23268798 ~ 23275460 (+)
G186842 NA non-coding downstream 269517 23420899 ~ 23432383 (+)
G186843 NA non-coding downstream 283754 23435136 ~ 23435351 (+)
G186841 NA non-coding downstream 286858 23438240 ~ 23439520 (+)
LOC120546283 NA non-coding downstream 324317 23475699 ~ 23506564 (+)
ppp2r5a ppp2r5a other upstream 2268 23095912 ~ 23142640 (+)
dtl dtl other upstream 49403 23087820 ~ 23095505 (+)
si:ch211-22i13.2 NA other upstream 178898 22962033 ~ 22966010 (+)
kcns3b kcns3,LOC103372653 other upstream 334388 22807879 ~ 22810520 (+)
lin28b lin28b other upstream 843323 22280967 ~ 22301585 (+)
rsph3 rsph3 other downstream 41256 23192638 ~ 23196996 (+)
tcte1 NA other downstream 408116 23559498 ~ 23564429 (+)
nfkbie nfkbie other downstream 426996 23578378 ~ 23589689 (+)
G186975 NA other downstream 928221 24079603 ~ 24083104 (+)
LOC120547070 NA other downstream 993615 24144997 ~ 24146762 (+)

Expression


Co-expression Network