meis2b (LOC104938729,LOC103355645,LOC105017579)


Basic Information

Item Value
gene id meis2b
gene name LOC104938729,LOC103355645,LOC105017579
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 6762711 ~ 6800793 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781984.1
CCACACTGCTCCTCCACGTTCCGTCATCAGCGTGTACTGTAGACGACAGAGCGGTCCTATAAACATCTGCCTTGCCGACCTGCAGACAGTGAGCGTGTCGCGAAGAGACATGGACATGAGGACAcactgagtgcagactgcactGAGCCGCGGACCGTCAGGGCATTCCTGTGATAAGGACAACTGATTCGCGGAATCAACATCATCAAACACTCACATCTGACAGATTATCACTAACACCCGTTAAAGAACTAAGAACATTTGCCAGTGCGCATTTTGGCCCTCGTGGCAACGGAAGGACCTATGTCTTTTTTGATCACTTTGCATTGATTTCAGTCATTGATTTACCCCATGCCACAGAACAGGGCAGGATTATAATTCCCTCTTGGATGTAAAAGTCATCGATTTTCCTACTCATCAACACCAAACTTTTCTTTACACGTCTGGAAATTGCGCACGGAGATGGCGCAAAGGTACGATGAGCTGGCTCTTTACGGAGGCGCGATGGACGGAGTCGGAGTCCCCACCTCCATGTACGGAGACCCGCACGCCCCCCGGCCCCTGCCCCAGGTCCACCACCTGAACCACGGGCCGCCTCCGCATCCGACGCAGCACTATGGAGCCCACGCGCCGCACAACATCATGCCCAGCAGTATGGGCAGCGCCGTCAACGACTCACTAAAGAGAGACAAGGACCAAATATACGGCCACCCTTTATTTCCACTGTTGGCTCTGGTGTTTGAGAAGTGCGAGCTGGCGACCTGCACGCCCAGGGAGCCCGGGGTTGCGGGAGGAGACGTTTGCTCCTCCGACTCCTTCAATGAAGACATAGCCGTATTTGCAAAACAGATCCGCGCAGAGAAACCTTTATTTTCTTCCAACCCAGAGCTAGATAACTTGATGATTCAAGCGATTCAAGTCCTACGATTTCATCTCCTGGAATTAGAAAAgGTTCATGAGCTCTGTGATAACTTCTGCCATCGGTACATCAGCTGCCTAAAAGGCAAAATGCCTATCGACCTGGTCATAGAGGACCGAGACATCTGCAAGTCGGACTTCGACGACCTCTCCGGATCCTCCACCAACCTCGCAGATCATAACCCTGCATCCTGGAGAGACATGGATGACACCCACTCCATGCCCTCTGTGGGCACCCCAGGACCGTCGAGCGGAGGACATGTCTCTCAGAGTGGCGACAACACCAGTGAACTTGGAGATGCCCTCGACAACAGCCTGGCATCACCAGGCACAGGAGACGAGGATGACCAAGACAAGAAAAGGCAGAAGAAACGAGGCATTTTCCCCAAAGTAGCAACAAATATAATGAGAGCATGGCTCTTCCAGCACCTTACGCACCCATACCCCTCAGAGGAACAGAAAAAGCAGCTAGCACAAGACACAGGCCTCACCATCCTTCAAGTGAACAACTGGTTTATCAATGCAAGGAGGAGAATAGTCCAGCCTATGATTGATCAGTCCAACAGAGCAGTGAGTCAGGGAACATCTTACAGTCCGGATGGCCAGCCAATGGGAGGATTTGTTCTTGATGGGCAGCAGCACATGGGTCTCCGACCTGGAGGGCCAATGGGTAGCATGGGCATGAACATGGGCATGGATGGGCAATGGCACTACATGTAAATCCATTTCACTGAGGCAAGCCTGAAAAACACTGGTAAAGCCTCCATGGTGGGCTCAGGGATCTTCTAACATCTGGCTGTGGAGCTCAGTACTGTAGCCGCCTCCGCAGCCACCACGTCAAACCCACCTGATCATCCACTTGGCTACTCCCACTCCCACCTCACCTTGCCCGAGCCTGCACAGTGCGCACGTGTAGAGGATCGCATGGAAGCACCAGGCCGCTCAAAACTTTAACATTAAACGGAACAGAGACTTGGAGCTTTAAGGCTGCATGTAAAATATGAGGACGAAGGACTTCATagtgaagagaagcagtttGACACATCTCCTCCATTTCGtttgaattatttatttatttttctacaaCAGCGGACCATGGGAAAGACAACTTTTTACCTTTTTCCCATTTTTAAACTAAAGCTTTACCCTCGGAAATAAAAttgtacaaaacacacacacacacacacacacacataaacgcatgcacgtgcacacacacacacacacacaaacgcatgcacgtgcgcacacacacacatacacacacacacacacacacaccctctctttacaggaaaacaaaacaaaaaacactgtgaatatttttgtttaatatgaGGACTTTAATTGTTGTGCTAGATTTGTGCTCCTTATTTGGTTGTTTCTATTTATGTTTGTGCTTGTGATCACTAGAGGAGTGAGCTTGTACcactgacatgtttttttttaaaatcccaACTTTAAtcaaaaaatttaaagaaaaaaactgtatatttttgtttgttttcaatgCACTACATCTCTTTCCTTTTACTTGTGTTTGTATAAATTGGAACGGAAACCTTTTTTGACAATGTTTTGAATAGTTTTAGCACCAAAACACAGAAGTCTGCACTAAAATCAAATAAAGAAGCTTAAAtgaggaagacaaaaaaaaggatCGAGCAAAGTGATTTAATGTGACGAGCAGATCTGCCATCCTGATTGTTTCCGTTATGCTATTTTCCTGCTTGCTCACTTTAAAATCCGATCGAGAAAGGTCAGTGTAGGCGTTGGAGAAAATTGTTTAAGCAACGACATTAGTTGGTGGTGCAGGTCACGTAGCAAGCACTGGTTCGATATGAGACGGGATTGCAGTTGTCTCGCGTTATTCGATTGATGGTGACAGGAATGATGGATGGCCTGGCTGCAAAGTTCAAGAAAATTCAGAGCGAAGTCGGAGGCTGCAGCGGCGGGCAGCTTTTACTAAATGTTGTTGTTTCTATATATAGTTATAGGGCTACTGCTGGGATGGTTGGATGCATATGTGTGAGTATGTCTCTGACAGGAAGACAAAAATATGTAGACAcgtaaaatgaaaaacattgtttcctaaaaaaaaacaaaaaaacttagtTTTCAATGAAACACTG

Function

NR:

description
PREDICTED: homeobox protein Meis2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K16672 HTH; homeobox protein homothorax

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781984.1 True 3050 mRNA 0.47 13 6762711 6800793

Neighbor

gene id symbol gene type direction distance location
LOC120546794 NA coding downstream 297909 6462940 ~ 6464802 (-)
LOC120546792 LOC104959018 coding downstream 689491 6070546 ~ 6073220 (-)
gopc gopc coding downstream 753271 5986437 ~ 6009440 (-)
lrfn2b LOC103354004,LOC104943823 coding downstream 1174474 5389153 ~ 5588237 (-)
LOC120547345 NA coding downstream 1482991 5259465 ~ 5279720 (-)
cnih3 cnih3,LOC108248696,LOC101155158,LOC107095392,LOC106527994,LOC107384796,LOC100708389,LOC103358879,LOC101472542 coding upstream 644068 7444861 ~ 7588065 (-)
LOC120546734 cd2ap coding upstream 1450923 8251716 ~ 8340747 (-)
LOC120546378 NA coding upstream 1748386 8549179 ~ 8550180 (-)
LOC120546379 LOC103375580 coding upstream 1757676 8558469 ~ 8559470 (-)
LOC120546380 NA coding upstream 1764350 8565143 ~ 8566141 (-)
G182789 NA non-coding downstream 5879 6756575 ~ 6756832 (-)
LOC120546805 NA non-coding downstream 29999 6732157 ~ 6732712 (-)
G182775 NA non-coding downstream 45638 6716745 ~ 6717073 (-)
G182769 NA non-coding downstream 51570 6710594 ~ 6711141 (-)
G182762 NA non-coding downstream 90063 6671241 ~ 6672648 (-)
LOC120546804 LOC108249206,LOC108241867,LOC103144399,LOC106919223,LOC106960717,LOC106511603 non-coding upstream 67682 6868475 ~ 6871244 (-)
G182828 NA non-coding upstream 126267 6927060 ~ 6934023 (-)
LOC120546800 NA non-coding upstream 139159 6939952 ~ 6940460 (-)
trnak-uuu_18 NA non-coding upstream 226349 7027142 ~ 7027214 (-)
trnak-uuu_19 NA non-coding upstream 229181 7029974 ~ 7030046 (-)
G182764 NA other downstream 61594 6700491 ~ 6701117 (-)
cgrrf1 NA other downstream 493568 6232742 ~ 6269143 (-)
G182502 NA other downstream 850802 5911312 ~ 5911909 (-)
G182474 NA other downstream 969773 5790289 ~ 5792938 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other downstream 1448996 5311506 ~ 5313715 (-)
G182952 NA other upstream 960772 7761565 ~ 7766386 (-)
G182977 NA other upstream 1223922 8024715 ~ 8025044 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other upstream 1248665 8049458 ~ 8126664 (-)
LOC120546397 NA other upstream 1980535 8781328 ~ 8787218 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other upstream 2220167 9020960 ~ 9024565 (-)

Expression


Co-expression Network