LOC120546792 (LOC104959018)


Basic Information

Item Value
gene id LOC120546792
gene name LOC104959018
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 6070546 ~ 6073220 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039781997.1
GAGAGAACCTCAGTCACAGGGACTGACTGAACAAGGCAGTTGTCATAACTGAGGCTATCATCATGGGGGAGTGGTCCTTCTTGTCTGATTTGTTGGACAAGGTGCAGTCACACTCCACTATAGTAGGGAAGGTCTGGATGAGTGTTCTTTTCCTCTTTAGGATCTTTATCCTAGCTGCTGGCGTAGATAAAATATGGGGAgatgaacaagcaaacatgaacTGTAACACCCACAGCCCTGGCTGCAGGAACGCCTGCTATGATCAATCCTTCCCCATGTCTCACACACGCTTCTGGGTCCTCCAGATCCTTATTGTCTCCACTCCAACAATCATTTATTTGGGCCACGTCCTGCTGGTGATTCGCAGAGAAAACAAGTTAAGGAGACGCCTGGAGCAGAAACTTGGTAAAAATGGGAAAGTTAAATCTCCAAAGTATTCAGATGAACATGGCAAGGTACAGCTCAAGGGCGTCCTGCTGGTCAGCTACCTGATGCAGCTGCTGTTCAAGATCCTGCTTGAAGTGGCATTCAGCGTAGGCCAGTACTACCTCTATGGCTTTATACTTATGCCTAGTAAGATTTCATATAAAGAATACCCCTGTCCATCACCTGTAGACTGCTTTATAAGTCGTCCCACAGAGAAAACCATCTTCATTGTCTTTATGTTGGCAATGACCGTCCTCTCTGTGATCCTCAACATCATGGAGATGTTCCACCTAATGATCTCAAAAATAAAGGAGAATAAAAGGAGAAGCAGTGGCTCAGAGATGTACTGCCTCAACAAACCAAACCACAATTCAACTGAGGGAGTTACATTTTGTTGAAGGACTGTGAACAGAGATATTTAGCTTTAAGTTGGATCCTGATCCTTGCTTCTCAAGGTTATTAGACATAAATATTGAGTTAAGTCACATCCACTTTTTAATTGTCAGACTACTACATGTATATTATGTACCAACAGTAAGACatcatatattttacttttacttgaggcTTTACATAAATCAGGTATGTGGCAAGTACCAGGATGGATTGTATTCAACCATATCTATCAAATTGTACAGAAGCAGTCGACGTGAACATGACATTATCTGATCCAAGAAtattaaatgtgtatgtgtaattAATTACCagtaaaattgtgtttttatttcatcatcTATCTGTTGAGTTTTAATTTTCTCAGTAGCTTTGGTACATTTCTCAGATCACAATTGACACTCTCAAATCTGTTTGTTCAACTTCACATGATATAGTCACTTGTGCACAATGTATCATTGTTTTGGTCAAATAGCAAGTGCTTTTGTACATGGATGCAATTGATCATGTACAATTGTCTACTGTTTTTTACATGATCAATTGATTATGATATGTTGATCAAAATATAATATACTGGATATCTGTTGAATTGTCTTTCTCCCAAAACATCTAGgcataaataataattgaatatgTCTTTAAATGCAAAATGGTTGAACTCATTGTCATAATCGGTCAAGCAAGTTTTCCATTCAGAAAAAACGCATTTCTTGTTGTAACCTTCTTCATTGTTGacatagtattttttttctttgtgctataaaatagttttgtgtttttctttctgaatCCCAATGACACTGTAATTTGTtgaaaaccaaaaataaaagaataaatgtAAATCCTG

Function

NR:

description
PREDICTED: gap junction Cx32.2 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039781997.1 True 1666 mRNA 0.38 2 6070546 6073220

Neighbor

gene id symbol gene type direction distance location
gopc gopc coding downstream 61106 5986437 ~ 6009440 (-)
lrfn2b LOC103354004,LOC104943823 coding downstream 482309 5389153 ~ 5588237 (-)
LOC120547345 NA coding downstream 790826 5259465 ~ 5279720 (-)
LOC120547277 NA coding downstream 816846 5247945 ~ 5253700 (-)
LOC120546193 NA coding downstream 946765 5115179 ~ 5123781 (-)
LOC120546794 NA coding upstream 389720 6462940 ~ 6464802 (-)
meis2b LOC104938729,LOC103355645,LOC105017579 coding upstream 689491 6762711 ~ 6800793 (-)
cnih3 cnih3,LOC108248696,LOC101155158,LOC107095392,LOC106527994,LOC107384796,LOC100708389,LOC103358879,LOC101472542 coding upstream 1371641 7444861 ~ 7588065 (-)
LOC120546734 cd2ap coding upstream 2178496 8251716 ~ 8340747 (-)
LOC120546378 NA coding upstream 2475959 8549179 ~ 8550180 (-)
G182517 NA non-coding downstream 85243 5984850 ~ 5985303 (-)
G182518 NA non-coding downstream 87792 5981404 ~ 5982754 (-)
G182513 NA non-coding downstream 94156 5976121 ~ 5976390 (-)
LOC120546803 NA non-coding downstream 95647 5970833 ~ 5974899 (-)
G182507 NA non-coding downstream 114596 5930663 ~ 5955950 (-)
G182562 NA non-coding upstream 25195 6098415 ~ 6098646 (-)
G182566 NA non-coding upstream 54385 6127605 ~ 6128535 (-)
G182567 NA non-coding upstream 55363 6128583 ~ 6128828 (-)
G182574 NA non-coding upstream 86345 6159565 ~ 6159858 (-)
G182577 NA non-coding upstream 90995 6164215 ~ 6164437 (-)
G182502 NA other downstream 158637 5911312 ~ 5911909 (-)
G182474 NA other downstream 277608 5790289 ~ 5792938 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other downstream 756831 5311506 ~ 5313715 (-)
smim8 smim8 other downstream 1267054 4745773 ~ 4803492 (-)
G182121 NA other downstream 1904550 4163358 ~ 4165996 (-)
cgrrf1 NA other upstream 159522 6232742 ~ 6269143 (-)
G182764 NA other upstream 627271 6700491 ~ 6701117 (-)
G182952 NA other upstream 1688345 7761565 ~ 7766386 (-)
G182977 NA other upstream 1951495 8024715 ~ 8025044 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other upstream 1976238 8049458 ~ 8126664 (-)

Expression


Co-expression Network