cnih3 (cnih3,LOC108248696,LOC101155158,LOC107095392,LOC106527994,LOC107384796,LOC100708389,LOC103358879,LOC101472542)


Basic Information

Item Value
gene id cnih3
gene name cnih3,LOC108248696,LOC101155158,LOC107095392,LOC106527994,LOC107384796,LOC100708389,LOC103358879,LOC101472542
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 7444861 ~ 7588065 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782000.1
TCTGCTCGCTGCTGCTGATAGGTTTGTCAGGAAAaaacagatatttttttaaCGCCTTGTGCAAGAAGTGGCGAGGGGCTCTTCTCATAACACCATCACAGCACAGATACAGCAGAGTTCCTTCTGCCGCTGAATGGATTACCTACATATTCCCCTCTCCCGAATGGTTTTGCGCCCCTCCTCTTTATATTAATAAGCTCCACTCATCGCTGAGAAGAGCGCTGCCTTTCTATGATTACATGATCAATTTACTAACACCGTGGACACTGATCGCTGATCATGCCAAGTGCGCTCATTTGAGACCAGCTTTGACTTCAGAGTCAAATCACCGCTGCTGGGTGGACGCAGACGCACGGCTTATCTGGAGCGGTTTGCTGCAAAAAATTGTTGCAAACATTGTGAGGGGCGAAGTCATGGTGCCGGTACCGCATCGGCTTCTCATGGCACCTTGAGAACTTTCTTCCTgattgcccccttttttttcatCTTGTGGTTTTAGATGTTTGTCAGCGGGATCGTGCTTCTTTGGGAAATTATCCACCGTTTCCCCTTTCAATTATGTTCACTTTTGCTGCCTTCTGCTATATGCTGTCTCTGGTCCTCTGTGTGTCGCTGATCTTCTTTGCAATATGGCACATAACAGCTTTTGATGAGCTCCAGGCTGACTTCAAGGTGCCGATCGATCAGGGCAATCCACTCCATGCGagggagagactgcGGAACATCGAGAGGATCTGCAATCTCTTGAGGAAGTTGGTGCTACCAGAGTACTCCATCCATGGACTCTTTTGCATCATGTTCCTGTGTGCCCAGGAGTGGCTGACTGTGGGCCTCAACATCCCGCTGCTCTTCTACAACACGTGGAGTAGGTACTTCCATTCCCCAACGGACACTAAGGAGCTGCTCTACGACCCAGCATCAGTGATGAATGGCGACACGCTCAAGTTCTGCCTAAAGGAGGCCTGGTGCAAGCTCTCCTTCTTCGTCCTCTCCTTCTTCTACTATCTGTACTGTGTGTGGAACCTGGATATATCCCTCTAATAGATCTTATCAATGGAAACACTTAAAGTATGATCTACTCATTGGTTACCTCATAACAACTGATTTATCAGCAactggaaagaaagaaaaaaagcctcTGGATTCACAGACTGCCACGGTCTAGGTCTAGAATTGAAAGACAGTAATTGTAAAAGTAAAGAAAGGAAAATATTTTCTTCTGTGGAGCCAATCAATGAACTGGATAAGGGTTGAAGCTTCTTTTCTGCTTCATCCCCTTAACAAGGAAGGACATGTTTTATGCTCGCCTGTatataaaaactgaaattaaaagTCCTGTTTACAGTTTCACTGGTCATAGCGAGACCCGAGTTAATCACTGCCTGGCCAACGTTTGTACCACATGCatacgcacgcatgcacacaacacacacaaacacacaaacatacacacacacacaccctcctctGGAGTGATACCATACTTACTATACAGTAGCAGCGCAGGTAGCCCAGAGGACGAAGAGCACAGTAGCGTTTGCACAGTTTGTCTCAGGCACAGCATTGTGAAGCACTGTCCAGCCCAGCACAGCTCACCGACCCTCAGTCATTCCCCCTGGACACCTCACCAACCGTAGCTTAACTGTTGAGCCAGGAGCAAGGGCTAGATGGACAAGTGGACGGATAACATTGTACAGAAAAGAGAATGCACTggaggaaacgccagagcagccAGTTCTTAATAGTTTCCCCCAGACGGCACATACAGTCCATGGCCCGAgggtttttcttttcaacattaTGTGAATGGCTTTTGTGACATGTGCATTTTGGTGTATTCTTTAACAAAAGGCATTTCTAATTGAATTATGATCTACAGCTAAAGGTATTCTATACAGAAAATGCCTATTTAGTGTTATCCTAGTGTCGTTTGATTGTGGGAACATTTTCTAAAACTTAAACTAAAAACTGACACCTGTCCAAGCTTTTATAGTAGGAGCACACATTCTTTGCACAAATAATGTCTTTGATCTTGCACAATATCTGCAATATTTGGCTATATATTTGAGATGATTTATGATAGTCTAGCCACACTGGCGAAGGTCTTCCACCATCTAACGAACTATCCAGCCCTGTCTGAAGATGGGGACACAATGTGAATCTTTTCTAGCTTGATTTACCCCATGGACCAAAATGTAGTTCTTTCAGTATTGCAATCGATTTATTTATCACTATTTGTGATGGCTATACTGATGGCTTGCCTCCATCTCATACAAAATATTACTTTCCAATGTAACCACACCATGATAAGACAGCATATAGTGAATAAAGCAGAGGATGAGAAAGGTGCTAAGCATTGATCTGTCTTTATCTGTGATATCAATAAAAGCAACTGAAGCAGATGATGCAAGTGATACTGTATATGAGATCTGTCCGAGAATATTGATGTACTACTGTATAATGATTCCCAGAAAAGAAAGTTGCTCCCTTCCATATACAAGTCAGAAGTCAAAGGACAAGCTCAGCTAAAGATTATTATCTCTGCAGCTAGAACTCATTTAGAGTCTTGCTTAGAGACACTTCAGCAGGGCAGGAGCTTGAACCTGCATCTTCTATGTGTAGCACTGTTTTCTAACCGCCAGGCTCCTCTAGATCTTCATCATCTTATTCACACAATAAGCTCACTTTGTTAGCTGCTACTCAACGAGCAGCTGGGAATGCCCAATTCTTGTTGTTTTCTCTTACTCTAATTCAAGCATTTTCTATCCTTTCTGTGTATGTGACCGACCAAGTTGAATTTAGATATTGTTTATGaaataaagtattttaaaatcaaa
>XM_039782001.1
TCTGCTCGCTGCTGCTGATAGGTTTGTCAGGAAAaaacagatatttttttaaCGCCTTGTGCAAGAAGTGGCGAGGGGCTCTTCTCATAACACCATCACAGCACAGATACAGCAGAGTTCCTTCTGCCGCTGAATGGATTACCTACATATTCCCCTCTCCCGAATGGTTTTGCGCCCCTCCTCTTTATATTAATAAGCTCCACTCATCGCTGAGAAGAGCGCTGCCTTTCTATGATTACATGATCAATTTACTAACACCGTGGACACTGATCGCTGATCATGCCAAGTGCGCTCATTTGAGACCAGCTTTGACTTCAGAGTCAAATCACCGCTGCTGGGTGGACGCAGACGCACGGCTTATCTGGAGCGGTTTGCTGCAAAAAATTGTTGCAAACATTGTGAGGGGCGAAGTCATGGTGCCGGTACCGCATCGGCTTCTCATGGCACCTTGAGAACTTTCTTCCTgattgcccccttttttttcatCTTGTGGTTTTAGATGTTTGTCAGCGGGATCGTGCTTCTTTGGGAAATTATCCACCGTTTCCCCTTTCAATTATGTTCACTTTTGCTGCCTTCTGCTATATGCTGTCTCTGGTCCTCTGTGTGTCGCTGATCTTCTTTGCAATATGGCACATAACAGCTTTTGATGAGCTCCAGGCTGACTTCAAGGTGCCGATCGATCAGGGCAATCCACTCCATGCGagggagagactgcGGAACATCGAGAGGATCTGCAATCTCTTGAGGAAGTTGGTGCTACCAGAGTACTCCATCCATGGACTCTTTTGCATCATGTTCCTGTGTGCCCAGGAGTGGCTGACTGTGGGCCTCAACATCCCGCTGCTCTTCTACAACACGTGGAGTAGGTACTTCCATTCCCCAACGGACACTAAGGAGCTGCTCTACGACCCAGCATCAGTGATGAATGGCGACACGCTCAAGTTCTGCCTAAAGGAGGCCTGGTGCAAGCTCTCCTTCTTCGTCCTCTCCTTCTTCTACTATCTGTACTGTATGATCTACTCATTGGTTACCTCATAACAACTGATTTATCAGCAactggaaagaaagaaaaaaagcctcTGGATTCACAGACTGCCACGGTCTAGGTCTAGAATTGAAAGACAGTAATTGTAAAAGTAAAGAAAGGAAAATATTTTCTTCTGTGGAGCCAATCAATGAACTGGATAAGGGTTGAAGCTTCTTTTCTGCTTCATCCCCTTAACAAGGAAGGACATGTTTTATGCTCGCCTGTatataaaaactgaaattaaaagTCCTGTTTACAGTTTCACTGGTCATAGCGAGACCCGAGTTAATCACTGCCTGGCCAACGTTTGTACCACATGCatacgcacgcatgcacacaacacacacaaacacacaaacatacacacacacacaccctcctctGGAGTGATACCATACTTACTATACAGTAGCAGCGCAGGTAGCCCAGAGGACGAAGAGCACAGTAGCGTTTGCACAGTTTGTCTCAGGCACAGCATTGTGAAGCACTGTCCAGCCCAGCACAGCTCACCGACCCTCAGTCATTCCCCCTGGACACCTCACCAACCGTAGCTTAACTGTTGAGCCAGGAGCAAGGGCTAGATGGACAAGTGGACGGATAACATTGTACAGAAAAGAGAATGCACTggaggaaacgccagagcagccAGTTCTTAATAGTTTCCCCCAGACGGCACATACAGTCCATGGCCCGAgggtttttcttttcaacattaTGTGAATGGCTTTTGTGACATGTGCATTTTGGTGTATTCTTTAACAAAAGGCATTTCTAATTGAATTATGATCTACAGCTAAAGGTATTCTATACAGAAAATGCCTATTTAGTGTTATCCTAGTGTCGTTTGATTGTGGGAACATTTTCTAAAACTTAAACTAAAAACTGACACCTGTCCAAGCTTTTATAGTAGGAGCACACATTCTTTGCACAAATAATGTCTTTGATCTTGCACAATATCTGCAATATTTGGCTATATATTTGAGATGATTTATGATAGTCTAGCCACACTGGCGAAGGTCTTCCACCATCTAACGAACTATCCAGCCCTGTCTGAAGATGGGGACACAATGTGAATCTTTTCTAGCTTGATTTACCCCATGGACCAAAATGTAGTTCTTTCAGTATTGCAATCGATTTATTTATCACTATTTGTGATGGCTATACTGATGGCTTGCCTCCATCTCATACAAAATATTACTTTCCAATGTAACCACACCATGATAAGACAGCATATAGTGAATAAAGCAGAGGATGAGAAAGGTGCTAAGCATTGATCTGTCTTTATCTGTGATATCAATAAAAGCAACTGAAGCAGATGATGCAAGTGATACTGTATATGAGATCTGTCCGAGAATATTGATGTACTACTGTATAATGATTCCCAGAAAAGAAAGTTGCTCCCTTCCATATACAAGTCAGAAGTCAAAGGACAAGCTCAGCTAAAGATTATTATCTCTGCAGCTAGAACTCATTTAGAGTCTTGCTTAGAGACACTTCAGCAGGGCAGGAGCTTGAACCTGCATCTTCTATGTGTAGCACTGTTTTCTAACCGCCAGGCTCCTCTAGATCTTCATCATCTTATTCACACAATAAGCTCACTTTGTTAGCTGCTACTCAACGAGCAGCTGGGAATGCCCAATTCTTGTTGTTTTCTCTTACTCTAATTCAAGCATTTTCTATCCTTTCTGTGTATGTGACCGACCAAGTTGAATTTAGATATTGTTTATGaaataaagtattttaaaatcaaa
>XM_039782002.1
TCTGCTCGCTGCTGCTGATAGGTTTGTCAGGAAAaaacagatatttttttaaCGCCTTGTGCAAGAAGTGGCGAGGGGCTCTTCTCATAACACCATCACAGCACAGATACAGCAGAGTTCCTTCTGCCGCTGAATGGATTACCTACATATTCCCCTCTCCCGAATGGTTTTGCGCCCCTCCTCTTTATATTAATAAGCTCCACTCATCGCTGAGAAGAGCGCTGCCTTTCTATGATTACATGATCAATTTACTAACACCGTGGACACTGATCGCTGATCATGCCAAGTGCGCTCATTTGAGACCAGCTTTGACTTCAGAGTCAAATCACCGCTGCTGGGTGGACGCAGACGCACGGCTTATCTGGAGCGGTTTGCTGCAAAAAATTGTTGCAAACATTGTGAGGGGCGAAGTCATGGTGCCGGTACCGCATCGGCTTCTCATGGCACCTTGAGAACTTTCTTCCTgattgcccccttttttttcatCTTGTGGTTTTAGATGTTTGTCAGCGGGATCGTGCTTCTTTGGGAAATTATCCACCGTTTCCCCTTTCAATTATGTTCACTTTTGCTGCCTTCTGCTATATGCTGTCTCTGGTCCTCTGTGTGTCGCTGATCTTCTTTGCAATATGGCACATAACAGCTTTTGATGAGCTCCAGGCTGACTTCAAGGTGCCGATCGATCAGGGCAATCCACTCCATGCGagggagagactgcGGAACATCGAGAGGATCTGCAATCTCTTGAGGAAGTTGGTGCTACCAGAGTACTCCATCCATGGACTCTTTTGCATCATGTTCCTGTGTGCCCAGGAGTGGCTGACTGTGGGCCTCAACATCCCGCTGCTCTTCTACAACACGTGGAGGTACTTCCATTCCCCAACGGACACTAAGGAGCTGCTCTACGACCCAGCATCAGTGATGAATGGCGACACGCTCAAGTTCTGCCTAAAGGAGGCCTGGTGCAAGCTCTCCTTCTTCGTCCTCTCCTTCTTCTACTATCTGTACTGTGTGTGGAACCTGGATATATCCCTCTAATAGATCTTATCAATGGAAACACTTAAAGTATGATCTACTCATTGGTTACCTCATAACAACTGATTTATCAGCAactggaaagaaagaaaaaaagcctcTGGATTCACAGACTGCCACGGTCTAGGTCTAGAATTGAAAGACAGTAATTGTAAAAGTAAAGAAAGGAAAATATTTTCTTCTGTGGAGCCAATCAATGAACTGGATAAGGGTTGAAGCTTCTTTTCTGCTTCATCCCCTTAACAAGGAAGGACATGTTTTATGCTCGCCTGTatataaaaactgaaattaaaagTCCTGTTTACAGTTTCACTGGTCATAGCGAGACCCGAGTTAATCACTGCCTGGCCAACGTTTGTACCACATGCatacgcacgcatgcacacaacacacacaaacacacaaacatacacacacacacaccctcctctGGAGTGATACCATACTTACTATACAGTAGCAGCGCAGGTAGCCCAGAGGACGAAGAGCACAGTAGCGTTTGCACAGTTTGTCTCAGGCACAGCATTGTGAAGCACTGTCCAGCCCAGCACAGCTCACCGACCCTCAGTCATTCCCCCTGGACACCTCACCAACCGTAGCTTAACTGTTGAGCCAGGAGCAAGGGCTAGATGGACAAGTGGACGGATAACATTGTACAGAAAAGAGAATGCACTggaggaaacgccagagcagccAGTTCTTAATAGTTTCCCCCAGACGGCACATACAGTCCATGGCCCGAgggtttttcttttcaacattaTGTGAATGGCTTTTGTGACATGTGCATTTTGGTGTATTCTTTAACAAAAGGCATTTCTAATTGAATTATGATCTACAGCTAAAGGTATTCTATACAGAAAATGCCTATTTAGTGTTATCCTAGTGTCGTTTGATTGTGGGAACATTTTCTAAAACTTAAACTAAAAACTGACACCTGTCCAAGCTTTTATAGTAGGAGCACACATTCTTTGCACAAATAATGTCTTTGATCTTGCACAATATCTGCAATATTTGGCTATATATTTGAGATGATTTATGATAGTCTAGCCACACTGGCGAAGGTCTTCCACCATCTAACGAACTATCCAGCCCTGTCTGAAGATGGGGACACAATGTGAATCTTTTCTAGCTTGATTTACCCCATGGACCAAAATGTAGTTCTTTCAGTATTGCAATCGATTTATTTATCACTATTTGTGATGGCTATACTGATGGCTTGCCTCCATCTCATACAAAATATTACTTTCCAATGTAACCACACCATGATAAGACAGCATATAGTGAATAAAGCAGAGGATGAGAAAGGTGCTAAGCATTGATCTGTCTTTATCTGTGATATCAATAAAAGCAACTGAAGCAGATGATGCAAGTGATACTGTATATGAGATCTGTCCGAGAATATTGATGTACTACTGTATAATGATTCCCAGAAAAGAAAGTTGCTCCCTTCCATATACAAGTCAGAAGTCAAAGGACAAGCTCAGCTAAAGATTATTATCTCTGCAGCTAGAACTCATTTAGAGTCTTGCTTAGAGACACTTCAGCAGGGCAGGAGCTTGAACCTGCATCTTCTATGTGTAGCACTGTTTTCTAACCGCCAGGCTCCTCTAGATCTTCATCATCTTATTCACACAATAAGCTCACTTTGTTAGCTGCTACTCAACGAGCAGCTGGGAATGCCCAATTCTTGTTGTTTTCTCTTACTCTAATTCAAGCATTTTCTATCCTTTCTGTGTATGTGACCGACCAAGTTGAATTTAGATATTGTTTATGaaataaagtattttaaaatcaaa

Function

symbol description
cnih3 Predicted to be involved in regulation of AMPA receptor activity. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite and synapse. Orthologous to human CNIH3 (cornichon family AMPA receptor auxiliary protein 3).

NR:

description
PREDICTED: protein cornichon homolog 3-like isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20368 CNIH, ERV14; protein cornichon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782000.1 True 2837 mRNA 0.43 7 7444861 7588065
XM_039782001.1 False 2781 mRNA 0.43 6 7444861 7588065
XM_039782002.1 False 2834 mRNA 0.43 7 7444861 7588065

Neighbor

gene id symbol gene type direction distance location
meis2b LOC104938729,LOC103355645,LOC105017579 coding downstream 644068 6762711 ~ 6800793 (-)
LOC120546794 NA coding downstream 980059 6462940 ~ 6464802 (-)
LOC120546792 LOC104959018 coding downstream 1371641 6070546 ~ 6073220 (-)
gopc gopc coding downstream 1435421 5986437 ~ 6009440 (-)
lrfn2b LOC103354004,LOC104943823 coding downstream 1856624 5389153 ~ 5588237 (-)
LOC120546734 cd2ap coding upstream 663651 8251716 ~ 8340747 (-)
LOC120546378 NA coding upstream 961114 8549179 ~ 8550180 (-)
LOC120546379 LOC103375580 coding upstream 970404 8558469 ~ 8559470 (-)
LOC120546380 NA coding upstream 977078 8565143 ~ 8566141 (-)
LOC120546382 NA coding upstream 984338 8572403 ~ 8573320 (-)
LOC120546796 NA non-coding downstream 58574 7349782 ~ 7386287 (-)
G182916 NA non-coding downstream 87034 7351008 ~ 7357827 (-)
G182913 NA non-coding downstream 100184 7343144 ~ 7344677 (-)
LOC120546799 NA non-coding downstream 113326 7328374 ~ 7331535 (-)
G182850 NA non-coding downstream 387642 7057006 ~ 7057219 (-)
G182957 NA non-coding upstream 248528 7836593 ~ 7836797 (-)
G182958 NA non-coding upstream 249457 7837522 ~ 7837735 (-)
G182962 NA non-coding upstream 264919 7852984 ~ 7853601 (-)
G182980 NA non-coding upstream 452558 8040623 ~ 8041804 (-)
G182983 NA non-coding upstream 459435 8047500 ~ 8047938 (-)
G182764 NA other downstream 743744 6700491 ~ 6701117 (-)
cgrrf1 NA other downstream 1175718 6232742 ~ 6269143 (-)
G182502 NA other downstream 1532952 5911312 ~ 5911909 (-)
G182474 NA other downstream 1651923 5790289 ~ 5792938 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other downstream 2131146 5311506 ~ 5313715 (-)
G182952 NA other upstream 173500 7761565 ~ 7766386 (-)
G182977 NA other upstream 436650 8024715 ~ 8025044 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other upstream 461393 8049458 ~ 8126664 (-)
LOC120546397 NA other upstream 1193263 8781328 ~ 8787218 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other upstream 1432895 9020960 ~ 9024565 (-)

Expression


Co-expression Network