tshr (tshr)


Basic Information

Item Value
gene id tshr
gene name tshr
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11893534 ~ 11918141 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782028.1
CCTACAGCATCCCCACCTTCACAGCCTCACAGAAACTCCTGGGGCCCTGAAGAGAAAACTGAACATCCAGAGTCCAGCTCTActgtctgtctctagcctaTACCTGAGGATTACACtccaaaaaagataaaataacatCATTAGACTAGACTGGCTtacttcaaatttggttcaaaTTGATGCTGTGGACATCAAGAGGACTAGCTGTCAAGAAAAACAGAAGTCAGCCTGGGGGATATTTTTGAGCCGAAAAGTGAAAGCGAGCAGCGCGCCAGCATGCAGGTGATAACTTGTGCGTTGTTTACGCTCGTCACTCTCCCTGTCAGCAGCGTGTCGGAGGCTGACTCCTGCCCTGCTGTCTGCGAGTGCTCCGAGTGGAAGGCTCACACAATCTCCTGCTTTGACATTGATATTCTCCCCAGGTTTCCAGCAAGCACGGATACACTATGGCTTTTTGAGACCCACCTGTCATCCTTGCCAGCAGACGCCTTTGCCAACATGGTCAACATCTCAAGGATATATATATCAGTGGACGTGACGCTGAAGAGGCTGGAGAGGCACTCGTTCTACAGCCTGAGGAAAATCACCCACATTGAGATACGTAATGCAAAAAGTCTGACCTACATCGACCCAGAAGCCTTTAAAAATCTCCCAAACCTCAAATACCTGGGAATTTTCAACACcggcctctctctcttccctgaCTTGAGCAACATCCACTCTAATGACATGAACTTCATACTGGAAATTGTTGATCATCCCTACATCACTGAGATCCCGGCCAACGCATTCCGTGGCATCACCAGCGACGTGCTGACAGTGATGCTGTATGGAAATGGCTTCAGAGAAATCCAACATCATGCCTTCAATGGGACCAAGCTAGATCAAGTAGACCTTCACAGGAATAAGTATCTTAACAAGATGGATGAAAGGGCTTTTTCCGGCACCATCAGCGGCCCCATGCTTCTAGACGTGTCCCTGACCGGGATCACCTCCCTGCCAACCACAGGTATGGATTCTATCCGCGAGCTGAAGGCGCGCAATGCCTGGGCACTCAAAAAACTGCCGCCCATCAAAACCTTCAAGCACCTCACCATCGCCAACCTCACCTACCCCAGCCACTGCTGCGGCTTCAAAAACCTCAAAAAGAAACGAGGCTTTTTGGAGTACATCATCTGTAACCTGACTGCCTTCTACGACCAGCATCACAAGCGCTCGGTGGGGCCCCTCGGCGTGCCTTCCCTCCAAGGGGACGGCGTGGTGGAAACGGTCCCAGACCAGGAGCCGAATGACGGGAGCCACAGAGAGTCCGAccactggaggagaggagacttCCATGGAAGCCTCCACTACCACGCCTACTTTGGTGGCCAGCCAAATGAGGATGTGGGTTTCGGAGAGACCCTCAAGAACCCCCAGGAGGACACCAGCCAAGACTTTGACAGTCGTTACGATTACGTGGTCTGTGAGGAGGGCGAGGAGGTGGCGTGTGCGCCGGTGCCCGATGAGTTCAACCCTTGCGAGGACATCATGGGTTTCGGCTTTCTGCGAGTGTCTGTGTGGTTTGTGAGTCTGCTGGCTGTTCTGGGAAACGTGGCGGTGCTCCTGGTGCTGCTCACCAGCCACTACAAGCTCTCCGTGTCCCGCTTCCTAATGTGTCACCTGGCCTTCGCCGATCTGTGCATGGGGATTTATCTGCTGCTCATCGCCTCGGTGGACCTCCACACGCGAGCCGAGTACTTCAACCACGCCATAGACTGGCAGACGGGCCCCGGCTGTGGACTCGCTGGGTTTTTCACAGTCTTCGCGAGCGAGCTGTCCGTCTACACCTTGACGGTGATCACTCTGGAGAGGTGGTACGCCATCACCTTCGCTATGCGGCTGGATCGGAAGCTGCGTCTGCACCACGCGGCGGCCGTGATGCTGGCCGGCTGGATCTTCTGCCTCCTGCTGGCCCTGCTCCCGCTGGTCGGGGTGAGCAGTTACCAGAAGGTCAGCATCTGTCTACCGATGGACACCCAGTCCACGGTGGCTCAGGTCTTCATCTTGTCCGTGCTGGTGCTCAACATCCTGGCCTTTCTTGTCATCTGCGCTTGCTACTTCAAGATCTACTGCGCGGTGCACAACCCTCACTACCGCTCCGGATCCAAGGATACCAACATCGCCAAGCGCATGGCTGTGCTCATCTTCACTGACTTCTTGTGCATGGCGCCGATCTCCTTCTACGCCATGTCGGCGGTGCTGGACCGGCCGCTCATCACTGTCTCCAACTCCAAGATTTTATTGGTGCTGTTCTACCCGCTCAATTCCTGCGCCAACCCGTTCCTCTACGCCATCTTCACCAAGGCCTTCAGGGGGGACATATTTATCCTCCTCAGTAAGGTGGGCCTCTGTCAGCAGCGAGCGCAGCTGTTCAGAGGCCAGACGGTCTCGTCAAAGGGCAGCAGCGGGATATCTCAGGTCCGTAGAGACAAGGATAAGGTTAGGAAAGGTGGAAGCAGAGGCCAGGAAGAGTTGCCCATCCACCTGAAGAAGTGCTCCGGACATACCTGCCATCAAGCCGTCTGCCAGCAGACGAGCCCTGAAGAGAACCAGAGCCTGAAGACGTGAGCCAATCACCCGCTTCAAGTAGTAAAGCAAGACAGGTTCAGGTGGGAGAGGAGAGGCCTTCAAGTGTTTGTGGACAGATCTGTTTGGATATTTAACAGAAAGCTCCAGTATTCTGTATCTGCTTTAGTTTTTCAGGCCAAGTTCAGCTGTTTTCACAATTTGGGCTTGGATGATTTTATGGTTCCAGTTGTTGGAGAATATCAAGTGTCTCTGAAATGTGAGCCCGACTTCATCTAACTTATAGTGCTTTGTATTTGGAGGGACAGGctagaaaagaaaagattatTTTAAGGAAATATAGTAATGATTaaaactatacacacacacacacacacacacacacacacacacacacacacacacacacgattttTCAGTatctttaatttagttttacctCTGCACAGTCTAGCATTGATATATAAGGAAATATGACAGATCTTTAAAACTAAACTTTCCTGCGATAAGACCTTCCTAAGTCGCTCTATTCATTCTTGGCTATTTTGTTAAAGGACAGCCTGCTGGCTCAGTGCGGTTCACAGtgaaaacttgttttaaatgtttttaaatgtaaaaacactGCATCTATTATTGTCTAATCAATACCTCTGGATATAATGTCAATACCCGACAGTGTTTGATGATTTATGGATGAAAACAGGACACAttggtgtttttttgtctgttaaCCTGAAACCCTAACCctgaaactgaaaagaaaacatGGACAGGTATAGTACAGTACTTCTGTGATGTTGGAAAGTGGACACTAAAATTGTACTTTTATGTGGCTTATACCTGAACAAAATTGATGTATCACTTTCGTAGATTCATAAAAATAGTTGTGTACTTGTG

Function

symbol description
tshr Enables thyroid-stimulating hormone receptor activity. Acts upstream of or within skeletal system development. Predicted to be located in basolateral plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in thyroid follicle and thyroid primordium. Used to study hyperthyroidism. Human ortholog(s) of this gene implicated in Graves' disease; cardiomyopathy; congenital nongoitrous hypothyroidism 1; and mitral valve prolapse. Orthologous to human TSHR (thyroid stimulating hormone receptor).

NR:

description
PREDICTED: thyrotropin receptor

GO:

id name namespace
GO:0038194 thyroid-stimulating hormone signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004996 thyroid-stimulating hormone receptor activity molecular_function

KEGG:

id description
K04249 TSHR; thyrotropin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782028.1 True 3465 mRNA 0.50 10 11893534 11918141

Neighbor

gene id symbol gene type direction distance location
kcnk13b kcnk13,LOC106526329 coding downstream 220445 11659994 ~ 11673089 (-)
LOC120547092 psmc1 coding downstream 243474 11638846 ~ 11650060 (-)
LOC120546716 calm1,LOC107396020,LOC102778633,LOC102293206,LOC103380713 coding downstream 259204 11619704 ~ 11634330 (-)
LOC120546403 NA coding downstream 317477 11575473 ~ 11576057 (-)
LOC120547228 LOC104952422,LOC104931204 coding downstream 345184 11546186 ~ 11548350 (-)
nrxn3b LOC102203786,LOC101486071,LOC103457817 coding upstream 109407 12027548 ~ 12358231 (-)
trnat-ugu_2 NA coding upstream 665028 12583169 ~ 12583241 (-)
ccnk ccnk coding upstream 777796 12695937 ~ 12703184 (-)
LOC120546273 NA coding upstream 828245 12746386 ~ 12747738 (-)
LOC120547205 NA coding upstream 1028817 12946958 ~ 12948322 (-)
G183792 NA non-coding downstream 7028 11884577 ~ 11886506 (-)
G183788 NA non-coding downstream 24378 11867161 ~ 11869156 (-)
G183781 NA non-coding downstream 105213 11788001 ~ 11788321 (-)
G183753 NA non-coding downstream 145941 11747131 ~ 11747593 (-)
G183747 NA non-coding downstream 193569 11699052 ~ 11699965 (-)
G183813 NA non-coding upstream 84576 12002717 ~ 12025499 (-)
G183870 NA non-coding upstream 562392 12480533 ~ 12480930 (-)
G183872 NA non-coding upstream 586544 12504685 ~ 12505015 (-)
G183875 snw1,LOC102781075 non-coding upstream 600231 12518372 ~ 12521754 (-)
G183898 NA non-coding upstream 622442 12540583 ~ 12559775 (-)
G183650 NA other downstream 518919 11374108 ~ 11374615 (-)
LOC120546776 NA other downstream 1282909 10455244 ~ 10610625 (-)
G183528 NA other downstream 1372124 10520717 ~ 10521410 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other downstream 1792473 10099478 ~ 10101061 (-)
G183176 NA other downstream 2760062 9129573 ~ 9133472 (-)
ost4 NA other upstream 989161 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 1042357 12960498 ~ 13007868 (-)
hmgn3 hmgn3,LOC104958971 other upstream 1227323 13145464 ~ 13215900 (-)
runx2b runx2,LOC102312376 other upstream 1337744 13255885 ~ 13303784 (-)
fkbp1b fkbp1b other upstream 1540461 13458602 ~ 13468065 (-)

Expression


Co-expression Network