snx17 (snx17)


Basic Information

Item Value
gene id snx17
gene name snx17
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18141723 ~ 18172492 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782042.1
TGATGGGCCACTAGATACAGTGAACACAGAATGACTTGACTCCGCTGGTATATCTGCTTTCTCTGCGATTTCTATCACATTTTATCTATGAGTTTCCTCCGTCGCCGTGTCGATTTCTCTTCAGCAAAGTAGGAGACAGGAAAAACAAGCAAAACCACAAAAAGTGCAACTGTCTCCCCTGATATTTCGAAAGGTTTGACAACGGCTCTGCGACGCTGTGGGGTTTGCAGGAAGCAACTGCACCTTTTATCCCGAAACTTCATCTGGTTACGCTAATAATATACAGTTACCTGTACACGTTGAAACAAATATTACAGTAGGTGATTTTAAGCTATCACAAATTATTTATAAGTGGATGAAAAGGATATTTTAACGCTAATAGTGAAGGTGTAATTACTTAACACTTGCAACATGGCTGCTGCGGGAACGGCAGTGAGAAAAGTTTGACACTGACGTGGGAGAAGTTTTATGCGAATGCTAGTTGGTAAATGAGTTGTTGGCCAGATATTAAAGTCGTCAACAGTCTCCTCCAGCCTGGCGACGCTTTTCCCGGACCTACAAACCAGTGGATAAACCGTGTGAGAGCCTCCTCCTCTGTAGTCCCCGCCGACAGTCTCTGCAGTGGACTTTGTGGTGAAACTGTGGTCTCTTCTCCATCGTAAGCTGTTGTGGCGTTGGAGGACTTGTCGTCAGGCAGCAGGCTGTGTTTTGAGCTAAAATGCATTTTTCCATACCCGAAACGGAGGTTCGTTCGGGAGAAAATGGATCAACCTATGTGGCCTACAACATCCACGTAAATGGCGTGCTGCACTGTCGTGTACGCTACAGTCAACTTCTTGGCCTCCATGAACAGATAAAGAAAGAATATGGCAGCAATGTGGTGCCTGCATTTCCTCCAAAGAAGATCTTTACTCTGACTCCTGCTGAGGTCGAACAGAGACGAGAACACCTGGAGAAATACATGCAGGCTGtgcgtCAGGATCCCTTGCTTGGAGCCAGTGAGATGTTCAACAGCTTCTTAAGGAAAGCACAGCAGGAGACGCAGCAGATTCCCACAGAAGAAGTTGCTCTAGACATCTGCCTCTCCAACGGTCAGAAGGTCACAGTCAACATTCTGACTTCGGATCAGACGGAGGACGTCCTTGATGCTGCTGCAACAAAGCTTGACCTTCCAGATGAGCTAGTTGGTTACTTCAGTCTCTTCCTGGTCCGTGAGGGTGTGGATGGAGGTTTAACATttgtGCGGAAGCTGCAGGAGTTTGAGCTGCCTTATGTATCCATTAACAGCTTGCGGAGCTCTGAATTTCACATACTCCTACGGAAAAGctacTGGGACATGGCGTACGATGGTGATGTCATGGACAACAGAGTTGGCCTGAATTTGCTGTACGCCCAGACAGTGTCTGACATTGAGCGAGGCTGGATACTTGTCAACAAGGACCAGGACAGGCAGCTCAAATCACTGCAGGAAAAAGGCTCCAAGAAAGAATTTATCCATCTAGGTCAGACTCTCAAATATTATGGCTATATCAAGTTTGACCCTTGTATCACCGACTTCCCCGAGAAGGGCTGCCAAGTCATCGTCAGTGCCGGCAACAATGAGCTCAACTTCCACGTCAAGTTGCCCAACGAACAGATGAAGGAGGGAAGCTTCAAGGTCACACGCATGAGGTGTTGGCGAGTCACGTCTTCACAAGTCCCAATAGCCAACGGCACCACCAATTCCTGCAGCTCGTCCAAATGTGAGGTCAAACTGGAGCTGGCCTTCGAGTATCTGATGAGCAAGGACCGCCTCCAGTGGGTCACCATCACCAGTCAACAGGCTATCATGATGAGTATCTGCCTTCAGTCTATGGTGGATGAATTAATGGTGAAGAAGTCAGGCGGCAGCATTAAGAAGATGCTGAGGAAACGACACAACGGCTCCATCCACCGGTCAGACAGTCAGCAAGCTGTGAAATCTCCCCCTCTACTGGTGAGAAATGAGATGGACTCCCCTGACCCGAACCGTGAACAAATCGTCAAACTCTCAACCAAGCTGAGCTCGGTGTCCCTCCGAGGGATCAGCGCCTCCAACTCAGCAAATGATATCAGCGGCAATGATTTCCATGGCAACTATGCTTTCGAGGGAATCGGGGATGATGACCTGTAACCCCAGATCTGCCCTCCTCCCCTATTCATTCCAATGTCAGCGACTGGGACGACAAAGATAACAAGCTGAGCTGAGCCGAGCCGATTGGGCCCCACACGCCTCCGATTCTGCAAGATTGTAGCTTCCTGGAGAAATCGCTGCCTTAAGGTCTCATTTAATCTTTGACCGTGTCCTTTCTTTTAGACTCTAAAAGCTCATCTTGATTTGTATTTTAGTAACACTCATCATATTCAATTGAACCATTGTCCCTATGTTATTAACTTAGTGGCAACATACAGTAAATAGCATGTAAAGCTACAGGTACGCAAACAGggatgcttttgtttttgtatgttaCTGACAAATTCTTACTTCATTCGTTTCATTCACATTGACTACTGTTTCATCAACAGtagatgtgatttttttttttttttaataatgcagTTGAATTCATGAGGTACAAAgtaaattaatatatattataaactaCATAATGAAAACCTGCTAGATCTTGGATTCTTCCCCCAGTGGCTGCATGTTCCTTTCCAACCTGAGAGCCAAATGTTTAGTTAGACCTGGCACTAGTGATAATACAGCACAACTGGACAGTTCTCAAAATGACCCAGATTCCAGTGAATGTGTGGAAATAGATCTCAAAACTGTAGACCTCTCAGAGCAACTGCTTACTTATATGGATGATCAATGTTTGGCTTGGCTATATAccaaaatgtcatgtttttataCCGTTAGTGATCTTCTGTGTGTCATGCTACTCATGTGCCAAGTCAGCAAATATCTTAGCAGGATACCAGCATTTTTATTCAGCTTGCATTTGAGGCACAGTCACTCATACTGCCTTCAGAAATAGTCTGATGccttcatttttactttttcgcctCGTGGGTTAACTCGACATTGGTTGAAGTGTCAAATAAACGTCAGTGTCAGCCAGTGTTACCTAGAATCTTGCAGAACTTGATAGATGGTTGATTTGGCCGAGCTGCTTGCACTTGCTAAACCCATCACTTTTGCACAGTATTACAGTACAGGTGGAGATGAATGTTCGAGTGGAAGCTTGAGCATGACTTTAAACGTGGAGATTTCTTTCCCCAAGGGGCTCTGTAAATCAatctgatttttcttttttgatttttttttttaaccattttttaAAAGGTTTCTCATAAATGCCAAATTATAGTTTACTAAAGCATTttgcacaaaataaacaaaaattatGACAATGTCACTTTTTATATTATGTACATGCAATTAAGTATTCTGAACATTTACTAATATCTTTATCATCCATAGCTTATTGTAATCAAATAGATCAAATGTAATCTAAACTGTATAGAGCAAAAAAGTTTAAATGGACTAACATTTATTATTGTTTACATAATGTTTAGGGAACTTTTATTAGTTAAAATGTAAAGTGTTTACAAATTTTGCATCTGATTTTCTTTTGTCTAGTTCTTTTTTTGGGCGAGTGATGGTGTTGCGGGGAGCATTCTTTGGGGCTTCAGTTCATCGTAATGTGTATGTACATTGTGCCAATCATCTCAGAGGATGTAGTTGAAAAGGTGCTTTGGTGAAGTGGCTAATGTGATCACAATTGCTGGAGAACAAAGTTCATGGAGAGCAGGCAACAAACTGAACATATCCCGCTGTTTTATAAGAAGTcattccatttttttattgcTGTTGGCATCTGTTGAGCTGCATCTTGGCATGTTTCGAAGCCTCTAAATGTAAATCGATGCCAACCTATCAACAGCTTTACTCTCACTGGTAGCCAGAACTGTACACAAAATGTTCTCAATATAAATGTCTTGTTCTTTCACTGCTGTGCTTTTTCTGTTGTCTTAAGTTGTATTTACAGTAGGGGGATGTGGACACCACTCTTCATTTTAATTCTCTTAAATCCGGTCAATACCACGACTTACATGGAAGCTGCAAGGTTCTGGGTGTGTATAAATGTGTATGTGCCTAATTGAAGTGCATTTTTCATCAGCATCACTTTTAcagaaaatgtcaaatttcGTGATGATTGTATTGACTTGATTCATTCCGCTACTTTTCATTTTGATTTTAGTGGTACGGTCAGGGACAACTGTCATGATGCTAAAATAAACTCTGAAATTAGGTCACATTA
>XM_039782043.1
GATGGGCCACTAGATACAGTGAACACAGAATGACTTGACTCCGCTGGTATATCTGCTTTCTCTGCGATTTCTATCACATTTTATCTATGAGTTTCCTCCGTCGCCGTGTCGATTTCTCTTCAGCAAAGTAGGAGACAGGAAAAACAAGCAAAACCACAAAAAGTGCAACTGTCTCCCCTGATATTTCGAAAGGTTTGACAACGGCTCTGCGACGCTGTGGGGTTTGCAGGAAGCAACTGCACCTTTTATCCCGAAACTTCATCTGGTTACGCTAATAATATACAGTTACCTGTACACGTTGAAACAAATATTACAGTAGGTGATTTTAAGCTATCACAAATTATTTATAAGTGGATGAAAAGGATATTTTAACGCTAATAGTGAAGGTGTAATTACTTAACACTTGCAACATGGCTGCTGCGGGAACGGCAGTGAGAAAAGTTTGACACTGACGTGGGAGAAGTTTTATGCGAATGCTAGTTGGTAAATGAGTTGTTGGCCAGATATTAAAGTCGTCAACAGTCTCCTCCAGCCTGGCGACGCTTTTCCCGGACCTACAAACCAGTGGATAAACCGTGTGAGAGCCTCCTCCTCTGTAGTCCCCGCCGACAGTCTCTGCAGTGGACTTTGTGGTGAAACTGTGGTCTCTTCTCCATCGTAAGCTGTTGTGGCGTTGGAGGACTTGTCGTCAGGCAGCAGGCTGTGTTTTGAGCTAAAATGCATTTTTCCATACCCGAAACGGAGGTTCGTTCGGGAGAAAATGGATCAACCTATGTGGCCTACAACATCCACGTAAATGGCGTGCTGCACTGTCGTGTACGCTACAGTCAACTTCTTGGCCTCCATGAACAGATAAAGAAAGAATATGGCAGCAATGTGGTGCCTGCATTTCCTCCAAAGAAGATCTTTACTCTGACTCCTGCTGAGGTCGAACAGAGACGAGAACACCTGGAGAAATACATGCAGGCTGtgcgtCAGGATCCCTTGCTTGGAGCCAGTGAGATGTTCAACAGCTTCTTAAGGAAAGCACAGCAGGAGACGCAGCAGATTCCCACAGAAGAAGTTGCTCTAGACATCTGCCTCTCCAACGGTCAGAAGGTCACAGTCAACATTCTGACTTCGGATCAGACGGAGGACGTCCTTGATGCTGCTGCAACAAAGCTTGACCTTCCAGATGAGCTAGTTGGTTACTTCAGTCTCTTCCTGGTCCGTGAGGGTGTGGATGGAGGTTTAACATttgtGCGGAAGCTGCAGGAGTTTGAGCTGCCTTATGTATCCATTAACAGCTTGCGGAGCTCTGAATTTCACATACTCCTACGGAAAAGctacTGGGACATGGCGTACGATGGTGATGTCATGGACAACAGAGTTGGCCTGAATTTGCTGTACGCCCAGACAGTGTCTGACATTGAGCGAGGCTGGATACTTGTCAACAAGGACCAGGACAGGCAGCTCAAATCACTGCAGGAAAAAGGCTCCAAGAAAGAATTTATCCATCTAGGTCAGACTCTCAAATATTATGGCTATATCAAGTTTGACCCTTGTATCACCGACTTCCCCGAGAAGGGCTGCCAAGTCATCGTCAGTGCCGGCAACAATGAGCTCAACTTCCACGTCAAGTTGCCCAACGAACAGATGAAGGAGGGAAGCTTCAAGGTCACACGCATGAGGTGTTGGCGAGTCACGTCTTCACAAGTCCCAATAGCCAACGGCACCACCAATTCCTGCAGCTCGTCCAAATGTGAGGTCAAACTGGAGCTGGCCTTCGAGTATCTGATGAGCAAGGACCGCCTCCAGTGGGTCACCATCACCAGTCAACAGGCTATCATGATGAGTATCTGCCTTCAGTCTATGGTGGATGAATTAATGGTGAAGAAGTCAGGCGGCAGCATTAAGAAGATGCTGAGGAAACGACACAACGGCTCCATCCACCGGTCAGACAGTCAGCAAGCTGTGAAATCTCCCCCTCTACTGGACTCCCCTGACCCGAACCGTGAACAAATCGTCAAACTCTCAACCAAGCTGAGCTCGGTGTCCCTCCGAGGGATCAGCGCCTCCAACTCAGCAAATGATATCAGCGGCAATGATTTCCATGGCAACTATGCTTTCGAGGGAATCGGGGATGATGACCTGTAACCCCAGATCTGCCCTCCTCCCCTATTCATTCCAATGTCAGCGACTGGGACGACAAAGATAACAAGCTGAGCTGAGCCGAGCCGATTGGGCCCCACACGCCTCCGATTCTGCAAGATTGTAGCTTCCTGGAGAAATCGCTGCCTTAAGGTCTCATTTAATCTTTGACCGTGTCCTTTCTTTTAGACTCTAAAAGCTCATCTTGATTTGTATTTTAGTAACACTCATCATATTCAATTGAACCATTGTCCCTATGTTATTAACTTAGTGGCAACATACAGTAAATAGCATGTAAAGCTACAGGTACGCAAACAGggatgcttttgtttttgtatgttaCTGACAAATTCTTACTTCATTCGTTTCATTCACATTGACTACTGTTTCATCAACAGtagatgtgatttttttttttttttaataatgcagTTGAATTCATGAGGTACAAAgtaaattaatatatattataaactaCATAATGAAAACCTGCTAGATCTTGGATTCTTCCCCCAGTGGCTGCATGTTCCTTTCCAACCTGAGAGCCAAATGTTTAGTTAGACCTGGCACTAGTGATAATACAGCACAACTGGACAGTTCTCAAAATGACCCAGATTCCAGTGAATGTGTGGAAATAGATCTCAAAACTGTAGACCTCTCAGAGCAACTGCTTACTTATATGGATGATCAATGTTTGGCTTGGCTATATAccaaaatgtcatgtttttataCCGTTAGTGATCTTCTGTGTGTCATGCTACTCATGTGCCAAGTCAGCAAATATCTTAGCAGGATACCAGCATTTTTATTCAGCTTGCATTTGAGGCACAGTCACTCATACTGCCTTCAGAAATAGTCTGATGccttcatttttactttttcgcctCGTGGGTTAACTCGACATTGGTTGAAGTGTCAAATAAACGTCAGTGTCAGCCAGTGTTACCTAGAATCTTGCAGAACTTGATAGATGGTTGATTTGGCCGAGCTGCTTGCACTTGCTAAACCCATCACTTTTGCACAGTATTACAGTACAGGTGGAGATGAATGTTCGAGTGGAAGCTTGAGCATGACTTTAAACGTGGAGATTTCTTTCCCCAAGGGGCTCTGTAAATCAatctgatttttcttttttgatttttttttttaaccattttttaAAAGGTTTCTCATAAATGCCAAATTATAGTTTACTAAAGCATTttgcacaaaataaacaaaaattatGACAATGTCACTTTTTATATTATGTACATGCAATTAAGTATTCTGAACATTTACTAATATCTTTATCATCCATAGCTTATTGTAATCAAATAGATCAAATGTAATCTAAACTGTATAGAGCAAAAAAGTTTAAATGGACTAACATTTATTATTGTTTACATAATGTTTAGGGAACTTTTATTAGTTAAAATGTAAAGTGTTTACAAATTTTGCATCTGATTTTCTTTTGTCTAGTTCTTTTTTTGGGCGAGTGATGGTGTTGCGGGGAGCATTCTTTGGGGCTTCAGTTCATCGTAATGTGTATGTACATTGTGCCAATCATCTCAGAGGATGTAGTTGAAAAGGTGCTTTGGTGAAGTGGCTAATGTGATCACAATTGCTGGAGAACAAAGTTCATGGAGAGCAGGCAACAAACTGAACATATCCCGCTGTTTTATAAGAAGTcattccatttttttattgcTGTTGGCATCTGTTGAGCTGCATCTTGGCATGTTTCGAAGCCTCTAAATGTAAATCGATGCCAACCTATCAACAGCTTTACTCTCACTGGTAGCCAGAACTGTACACAAAATGTTCTCAATATAAATGTCTTGTTCTTTCACTGCTGTGCTTTTTCTGTTGTCTTAAGTTGTATTTACAGTAGGGGGATGTGGACACCACTCTTCATTTTAATTCTCTTAAATCCGGTCAATACCACGACTTACATGGAAGCTGCAAGGTTCTGGGTGTGTATAAATGTGTATGTGCCTAATTGAAGTGCATTTTTCATCAGCATCACTTTTAcagaaaatgtcaaatttcGTGATGATTGTATTGACTTGATTCATTCCGCTACTTTTCATTTTGATTTTAGTGGTACGGTCAGGGACAACTGTCATGATGCTAAAATAAACTCTGAAATTAGGTCACATTA

Function

symbol description
snx17 Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within protein transport and signal transduction. Predicted to be located in cytoplasmic vesicle and cytosol. Predicted to be active in early endosome. Is expressed in brain; eye; liver; and pancreas. Orthologous to human SNX17 (sorting nexin 17).

NR:

description
PREDICTED: sorting nexin-17

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17929 SNX17; sorting nexin-17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782042.1 True 4289 mRNA 0.43 15 18141723 18172492
XM_039782043.1 False 4273 mRNA 0.43 15 18141723 18172491

Neighbor

gene id symbol gene type direction distance location
si:ch211-278j3.3 LOC100692210,LOC102294113,LOC101474259,LOC103355636 coding downstream 16151 18102262 ~ 18125572 (-)
si:dkey-71h2.2 LOC102796288,LOC101475494,LOC104959816,LOC106959609,LOC103138648 coding downstream 40629 18062720 ~ 18101094 (-)
LOC120547347 NA coding downstream 73110 18068498 ~ 18068613 (-)
xkr6b xkr6,LOC104922444,LOC102798941,LOC102196726,LOC102289544 coding downstream 261870 17825639 ~ 17879853 (-)
ccm2 ccm2 coding downstream 317206 17814475 ~ 17824517 (-)
eif2b4 eif2b4 coding upstream 4921 18177413 ~ 18182615 (-)
baalcb LOC103363522,LOC102076438,LOC102297435,LOC101471426 coding upstream 25993 18198485 ~ 18203945 (-)
ptk2bb ptk2b coding upstream 121345 18293837 ~ 18314467 (-)
LOC120546602 NA coding upstream 486417 18658909 ~ 18667719 (-)
LOC120546605 LOC103372633,LOC101488065,LOC104964430 coding upstream 496469 18668961 ~ 18680534 (-)
G185320 znf513,LOC102795572 non-coding downstream 1516 18137725 ~ 18140207 (-)
G185295 NA non-coding downstream 80375 18060389 ~ 18061348 (-)
G185294 NA non-coding downstream 83551 18057420 ~ 18058172 (-)
G185236 NA non-coding downstream 225195 17916141 ~ 17916528 (-)
G185200 NA non-coding downstream 450281 17687876 ~ 17691442 (-)
LOC120546287 NA non-coding upstream 11468 18183960 ~ 18186587 (-)
G185368 NA non-coding upstream 145904 18318396 ~ 18318711 (-)
G185376 NA non-coding upstream 224396 18396888 ~ 18397170 (-)
G185454 NA non-coding upstream 463892 18636384 ~ 18636662 (-)
G185467 NA non-coding upstream 522062 18694554 ~ 18694796 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other downstream 228687 17911270 ~ 17913036 (-)
zgc:153284 NA other downstream 374813 17764805 ~ 17766910 (-)
tbpl1 tbpl1 other downstream 510372 17623124 ~ 17631351 (-)
LOC120547341 NA other downstream 872089 17266359 ~ 17269634 (-)
gpatch2 gpatch2,LOC102785715 other downstream 1305740 16825652 ~ 16835983 (-)
LOC120546829 LOC104964434,LOC104922426,LOC103363570,LOC107377518 other upstream 317323 18489815 ~ 18506198 (-)
LOC120546357 LOC106525279 other upstream 467929 18640421 ~ 18647401 (-)
abcd4 abcd4 other upstream 605638 18778130 ~ 18790373 (-)
LOC120546223 LOC102213764,LOC101481591 other upstream 732045 18904537 ~ 18907254 (-)
LOC120546238 efr3b,LOC101073163 other upstream 1161563 19334055 ~ 19354316 (-)

Expression


Co-expression Network