atraid (atraid)


Basic Information

Item Value
gene id atraid
gene name atraid
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18173169 ~ 18177104 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782044.1
TGTCTGCTACAGTAGGATCATATGACTTCAGTCGATGAAAATGAAAGCTGGGTGCAGCCAGCTGAAATCTGTAGTGCTTATTTTGATCTTTAATTTAAGTTTTTACGCAAGTTATCAACTGACTGAGCTGCAGGTATGTGAGCTCTGCAGCGGTACAGTCCTAAACGGCACCGTAGTGGGCCGGTTTTGCTCCTCGTCCGCTGGTCGGATAGACGGGCGCTGCTGCTTGAGAAATGACAACACAAGCAACCCTGAACACATCATCGGGTTGGATCTGTCCAATTGTTCACTAACTCATGTGGAGGATCTTCAGGGAGCATCAACAGCTTTAATGATAGACCTCTCACTAAATCCTATTGTCAACATCAGCGACACAGCATTTCAAGGATTTATTGAGTTAAATTACATAATTTTGCCACAAGACATAGTTTGTCCAGGCGGCAACACTTCTTGGGGAAAGGTGGAGGTCAAAGAGGGAACTCGTCTTTGTGAAGGCCAAAAAGATATGTGCAACCAAACTGGACAGCTGTCCATTAACTGCCCGGAGAACTCCCTCTGCGCCCCCTACGGCCCCGGCTTCTCCGAGTGCAGCTGTGCTGACAACTATCATGGATACAAGTGTCTTCGAGAGGGGGAGTTCCCGGCTCTGCAGGTGTTTGGGCCTCTTGGAGCATCAACAGTGGTGATCTCTTTCCTGCTGTGGGTCACCCAGAGACGTAAAGCCAAATCATTCTAAGCTGAGCTGCAGTCGACTTCTTTATCTGCAATGATCTACTGAGCTGAAACTGAAAGGGAAAATGCTGACATAAAGCCTGAGGTTATCCCCAGGCTTCTTCTAAACATTGTTTTATTCTTCTTTTGTGTAACAGATATATTTTATCAAGGTAAAAACTGacattgactttttgttttatacTGCATCATGAGTGCAATTTTAGAGAGAAAATAATTTCAAcaagttttacatttttggcaATAATAGCGGTTaccattttaattattttttgacagTAGTTGTTGGGTCCGGTGTAGTTGACCGACACAAGATACTAATGAAGAGGTTGGGGTGAAGAAAGTTCTGAGGGCTTGCTCGCTGTTAACTGTGCCAAAAATGCACTGAATGTGTACGGGTTTACACGATGGAATGAAGTCAGGTTTACTCTATGAATCATGATGTGAACCATCAGTTTTTCCGTTaagttagataaaaaaaaagtgggacATTGAGTTTGACTTACTACAGCATTTTATTTAGTGGTCACCTGCTTTCATGCTGTTACCATATCTCGTATGTATCAACTCCAAGAAGACACAAGACTCAAAATGTCGTGTGCCTACTGTTGAGTTACACTGAACTCATCTGCTAAAATGTGTTCATAAGTCACATGTGGAAACTGTCTCGATGTTGATGGGTGAGTAGTTTTGACGCTTCTTATCAATGAGATTCAGGGttctaataaaatataaaaaacagtaCAGACTGTATATTGCTTTGCTTGAGTTACCACCATGAAATTATGCCCATACAATGTTACCTAATTGGAAAAGACAAAGTGTCACAAACAGTTCTAGGGCTGCTCACAGTGTGCGCTGTGAATAAAATGTTGTTCCCTCCAACTTGTTTCCCCCTCACGTACAAGACTAAAATGTGTGCCAATACGAAGTTTCAAGAACGTGAGCATCATGTGTTGCCATTGTGGACACACACAATCTGAGATCCTATGCCAAAAAATGTTTTACCACCTGGTTTACATTTTTCTCTTCTTTATCCTGTTCAATTGATCAGGTCATTAAAATCACATCAAATGAA

Function

symbol description
atraid Predicted to be involved in several processes, including negative regulation of osteoblast proliferation; positive regulation of bone mineralization; and positive regulation of osteoblast differentiation. Predicted to act upstream of or within cell differentiation. Predicted to be located in nuclear envelope and perinuclear region of cytoplasm. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human ATRAID (all-trans retinoic acid induced differentiation factor).

NR:

description
PREDICTED: all-trans retinoic acid-induced differentiation factor isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782044.1 True 1810 mRNA 0.42 7 18173169 18177104

Neighbor

gene id symbol gene type direction distance location
blk blk,LOC102291483,LOC102797075 coding upstream 161218 18002070 ~ 18011951 (+)
LOC120546768 NA coding upstream 179171 17976113 ~ 17993998 (+)
sox7 sox7 coding upstream 217571 17952559 ~ 17955598 (+)
pinx1 LOC102299901 coding upstream 223724 17919578 ~ 17949445 (+)
tdh LOC108242421,LOC106524872,LOC104962272,LOC104922441 coding upstream 260139 17906741 ~ 17913030 (+)
nme6 nme6 coding downstream 17379 18194483 ~ 18198503 (+)
si:ch211-142k18.1 LOC104964445 coding downstream 96725 18273829 ~ 18282702 (+)
chrna2b LOC104964447,LOC101470861 coding downstream 106796 18283900 ~ 18293835 (+)
LOC120547097 LOC104922430,LOC103363566,LOC104964450 coding downstream 170132 18347236 ~ 18358913 (+)
zc3h14 zc3h14 coding downstream 224968 18402072 ~ 18409077 (+)
LOC120546825 NA non-coding upstream 8515 18155970 ~ 18164654 (+)
G185258 LOC104959833,LOC107082730,LOC103138645,LOC106923247,LOC106920026 non-coding upstream 68265 18103025 ~ 18104904 (+)
G185254 NA non-coding upstream 113802 18057411 ~ 18059367 (+)
G185156 NA non-coding upstream 408377 17763969 ~ 17764792 (+)
G185155 rps12 non-coding upstream 409433 17760676 ~ 17763736 (+)
G185323 NA non-coding downstream 4028 18181132 ~ 18181983 (+)
G185353 NA non-coding downstream 120759 18297863 ~ 18298151 (+)
G185354 NA non-coding downstream 122209 18299313 ~ 18300098 (+)
G185356 NA non-coding downstream 125076 18302180 ~ 18302519 (+)
G185357 NA non-coding downstream 125594 18302698 ~ 18302965 (+)
znf513a znf513,LOC102795572 other upstream 32909 18127131 ~ 18140260 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 other upstream 118243 18020956 ~ 18054926 (+)
G185237 NA other upstream 255921 17916853 ~ 17917248 (+)
LOC120546940 NA other upstream 479535 17674393 ~ 17693634 (+)
G185145 LOC108242497,LOC106926748,LOC106945794 other upstream 486771 17669172 ~ 17686398 (+)
ylpm1 ylpm1 other downstream 421261 18598365 ~ 18635052 (+)
LOC120547227 LOC104932566,LOC103364615 other downstream 528752 18705856 ~ 18711994 (+)
LOC120546624 prox1 other downstream 1027050 19204154 ~ 19237033 (+)
acbd3 acbd3,LOC102799892 other downstream 1177512 19354616 ~ 19427489 (+)
si:dkey-206f10.1 LOC103360989,LOC103380838 other downstream 1190616 19367720 ~ 19389223 (+)

Expression


Co-expression Network