fam49a (fam49a)


Basic Information

Item Value
gene id fam49a
gene name fam49a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10398802 ~ 10449410 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782067.1
GAGGGAACAGAGGGAGGGGTAAGTGCTCAGAGTGTTGTTGTCTGTCGCTGCTGGGGACAGACAGAGCTGGCCAAGGTCGGTGAAAGTACTGCTGAGACCAACATAACATCTTAAAAAGTACTACCCCAAGAGACATACAGagacaaagagaaagcGGATGATATAGACAGCAAGCCGGCGTCCTCCACCAGAGAAgGTTTGCTGGAATGGGTAACCTGCTAAAAGTCCTAACAAGGGATATAGAGAACTATCCACACTTTTTCCTGGACTTTGAAAAAACCAAATGGGGAATCTGTTAAAAGTGCTCACTTGCACAGAGCTTGAACAGGGGCCAAACTTTTTCCTTGATTTTGAAAatgcCCAGCCGACAGAAGGAGAGCGTGAGGTGTGGAACCAGGTGAACTCAGTCCTCCAGGACTCTGAGAACATCCTGACTGGCCTGCAGGCATACAAAGGAGCAGGCCAGGAGATCAGAGATGCCATTCAAAACCCCAGTGACTTCACGCTGCAGGAGCGAGCCTGGAACTCAGTCTGCCCGCTGGTCATCAAACTCAAGAAGTTCTACAGTTTCTCTCTCAGACTAGaggaggCTCTGCAGAACTTGTTGGAGTGCCTGACCTGTGCGCCCTTCACGCCCACTCAGCACCTGGAGAGAGAGCAGGCGCTGGCCAAACAGTTTGCTGAGATCCTCCACTTCACTCTGCGCTTTGATGAGCTCAAGATGAGAATTCCTGCAATCCAGAATGACTTCAGCTACTACAGAAGAACCATCAGTCGGAACCGGATAAACAACATGAATTTGGACATTGAGAGGGAAGTCAACAACGAGATGGCCAACAGGATGTCTCTGTTCTACGCCGAAGCCACACCCATGCTGAAGACACTCAGCAACGCAACCACAAACTTTGTGACAGAGAACAAGACTCTTCCACTGGAGAACACGACCGACTGTCTGAGCACCATGGCCAGCGTCTGTAAAGTCATGCTGGAGACCCCGGAATATTCGAGTCGTTTCAGCAGCGAGGACACGCTCCTGTTTTGCATGAGGGTCATGGTCGGAGTCATCATTCTTTATGACCACGTCCACCCCAACGGCGCcttcaacaagtcctccaagaTAGACATGAAAGGCTGCATAAAGGTTCTCAAGGACCAGCCGGCAGACAACGTGGAAGGCCTCCTGAATGCCCTCAAATTCACCACAAAACACCTGAACGACGAGTCCACTCCCAAGAACATCCGGACGATGCTCCAGtaatgttttgttctttttttttttatatatatatatatatatattaaagagGATCAATGCTCTGACCTCAAATAAGATGTATAtgtttacattatttaaaaagacTCGATGTTAATACTTTGTGTTATGGCATAGTCATTCCCTCCAAGCTATTGCAGAACATGTACCTTCtactttgcaaaaaaaaaaaaaaaaacaa
>XM_039782068.1
GAGGGAACAGAGGGAGGGGTAAGTGCTCAGAGTGTTGTTGTCTGTCGCTGCTGGGGACAGACAGAGCTGGCCAAGGTCGGTGAAAGTACTGCTGAGACCAACATAACATCTTAAAAAGTACTACCCCAAGAGACATACAGagacaaagagaaagcGGATGATATAGACAGCAAGCCGGCGTCCTCCACCAGAGAAgAAACCAAATGGGGAATCTGTTAAAAGTGCTCACTTGCACAGAGCTTGAACAGGGGCCAAACTTTTTCCTTGATTTTGAAAatgcCCAGCCGACAGAAGGAGAGCGTGAGGTGTGGAACCAGGTGAACTCAGTCCTCCAGGACTCTGAGAACATCCTGACTGGCCTGCAGGCATACAAAGGAGCAGGCCAGGAGATCAGAGATGCCATTCAAAACCCCAGTGACTTCACGCTGCAGGAGCGAGCCTGGAACTCAGTCTGCCCGCTGGTCATCAAACTCAAGAAGTTCTACAGTTTCTCTCTCAGACTAGaggaggCTCTGCAGAACTTGTTGGAGTGCCTGACCTGTGCGCCCTTCACGCCCACTCAGCACCTGGAGAGAGAGCAGGCGCTGGCCAAACAGTTTGCTGAGATCCTCCACTTCACTCTGCGCTTTGATGAGCTCAAGATGAGAATTCCTGCAATCCAGAATGACTTCAGCTACTACAGAAGAACCATCAGTCGGAACCGGATAAACAACATGAATTTGGACATTGAGAGGGAAGTCAACAACGAGATGGCCAACAGGATGTCTCTGTTCTACGCCGAAGCCACACCCATGCTGAAGACACTCAGCAACGCAACCACAAACTTTGTGACAGAGAACAAGACTCTTCCACTGGAGAACACGACCGACTGTCTGAGCACCATGGCCAGCGTCTGTAAAGTCATGCTGGAGACCCCGGAATATTCGAGTCGTTTCAGCAGCGAGGACACGCTCCTGTTTTGCATGAGGGTCATGGTCGGAGTCATCATTCTTTATGACCACGTCCACCCCAACGGCGCcttcaacaagtcctccaagaTAGACATGAAAGGCTGCATAAAGGTTCTCAAGGACCAGCCGGCAGACAACGTGGAAGGCCTCCTGAATGCCCTCAAATTCACCACAAAACACCTGAACGACGAGTCCACTCCCAAGAACATCCGGACGATGCTCCAGtaatgttttgttctttttttttttatatatatatatatatatattaaagagGATCAATGCTCTGACCTCAAATAAGATGTATAtgtttacattatttaaaaagacTCGATGTTAATACTTTGTGTTATGGCATAGTCATTCCCTCCAAGCTATTGCAGAACATGTACCTTCtactttgcaaaaaaaaaaaaaaaaacaa
>XM_039782069.1
GAGGGAACAGAGGGAGGGGTAAGTGCTCAGAGTGTTGTTGTCTGTCGCTGCTGGGGACAGACAGAGCTGGCCAAGGTCGGTGAAAGTACTGCTGAGACCAACATAACATCTTAAAAAGTACTACCCCAAGAGACATACAGagacaaagagaaagcGGATGATATAGACAGCAAGCCGGCGTCCTCCACCAGAGAAgGTTTGCTGGAATGGGTAACCTGCTAAAAGTCCTAACAAGGGATATAGAGAACTATCCACACTTTTTCCTGGACTTTGAAAatgcCCAGCCGACAGAAGGAGAGCGTGAGGTGTGGAACCAGGTGAACTCAGTCCTCCAGGACTCTGAGAACATCCTGACTGGCCTGCAGGCATACAAAGGAGCAGGCCAGGAGATCAGAGATGCCATTCAAAACCCCAGTGACTTCACGCTGCAGGAGCGAGCCTGGAACTCAGTCTGCCCGCTGGTCATCAAACTCAAGAAGTTCTACAGTTTCTCTCTCAGACTAGaggaggCTCTGCAGAACTTGTTGGAGTGCCTGACCTGTGCGCCCTTCACGCCCACTCAGCACCTGGAGAGAGAGCAGGCGCTGGCCAAACAGTTTGCTGAGATCCTCCACTTCACTCTGCGCTTTGATGAGCTCAAGATGAGAATTCCTGCAATCCAGAATGACTTCAGCTACTACAGAAGAACCATCAGTCGGAACCGGATAAACAACATGAATTTGGACATTGAGAGGGAAGTCAACAACGAGATGGCCAACAGGATGTCTCTGTTCTACGCCGAAGCCACACCCATGCTGAAGACACTCAGCAACGCAACCACAAACTTTGTGACAGAGAACAAGACTCTTCCACTGGAGAACACGACCGACTGTCTGAGCACCATGGCCAGCGTCTGTAAAGTCATGCTGGAGACCCCGGAATATTCGAGTCGTTTCAGCAGCGAGGACACGCTCCTGTTTTGCATGAGGGTCATGGTCGGAGTCATCATTCTTTATGACCACGTCCACCCCAACGGCGCcttcaacaagtcctccaagaTAGACATGAAAGGCTGCATAAAGGTTCTCAAGGACCAGCCGGCAGACAACGTGGAAGGCCTCCTGAATGCCCTCAAATTCACCACAAAACACCTGAACGACGAGTCCACTCCCAAGAACATCCGGACGATGCTCCAGtaatgttttgttctttttttttttatatatatatatatatatattaaagagGATCAATGCTCTGACCTCAAATAAGATGTATAtgtttacattatttaaaaagacTCGATGTTAATACTTTGTGTTATGGCATAGTCATTCCCTCCAAGCTATTGCAGAACATGTACCTTCtactttgcaaaaaaaaaaaaaaaaacaa

Function

symbol description
fam49a Acts upstream of or within regulation of T cell differentiation and thymus development. Predicted to be located in membrane. Is expressed in several structures, including adaxial cell; digestive system; musculature system; sensory system; and trunk. Orthologous to human CYRIA (CYFIP related Rac1 interactor A).

NR:

description
PREDICTED: protein FAM49A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782067.1 True 1454 mRNA 0.47 13 10398802 10449410
XM_039782068.1 False 1374 mRNA 0.48 12 10398802 10449410
XM_039782069.1 False 1374 mRNA 0.48 12 10398802 10449410

Neighbor

gene id symbol gene type direction distance location
fzd3a fzd3 coding downstream 19675 10347000 ~ 10379127 (-)
lft1 LOC104927083,LOC104968260,LOC100695903,LOC101475792,LOC102299013 coding downstream 169797 10226816 ~ 10229005 (-)
kif26bb NA coding downstream 190477 10178309 ~ 10208325 (-)
cnstb LOC103373900 coding downstream 224824 10148075 ~ 10173978 (-)
LOC120547244 NA coding downstream 261026 10136000 ~ 10137776 (-)
sf3b6 sf3b6,pm14,SF3B6 coding upstream 212707 10662117 ~ 10666300 (-)
pla2g7 pla2g7,LOC102800283 coding upstream 244429 10693839 ~ 10708837 (-)
glrx5 glrx5 coding upstream 275060 10724470 ~ 10728525 (-)
LOC120547228 LOC104952422,LOC104931204 coding upstream 1096776 11546186 ~ 11548350 (-)
LOC120546403 NA coding upstream 1126063 11575473 ~ 11576057 (-)
G183497 NA non-coding downstream 165234 10220918 ~ 10233568 (-)
G183492 hnrnpu non-coding downstream 181676 10216351 ~ 10217126 (-)
G183457 NA non-coding downstream 221233 10176900 ~ 10177569 (-)
G183458 NA non-coding downstream 223447 10174736 ~ 10175355 (-)
LOC120547073 NA non-coding downstream 332516 10064593 ~ 10066286 (-)
G183530 NA non-coding upstream 108077 10557487 ~ 10558119 (-)
G183531 NA non-coding upstream 116506 10565916 ~ 10566164 (-)
G183534 NA non-coding upstream 141670 10591080 ~ 10591338 (-)
G183594 NA non-coding upstream 305586 10754996 ~ 10780282 (-)
G183616 NA non-coding upstream 498406 10947816 ~ 10948114 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other downstream 297741 10099478 ~ 10101061 (-)
G183176 NA other downstream 1265330 9129573 ~ 9133472 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other downstream 1374237 9020960 ~ 9024565 (-)
LOC120546397 NA other downstream 1611584 8781328 ~ 8787218 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other downstream 2272138 8049458 ~ 8126664 (-)
LOC120546776 NA other upstream 5834 10455244 ~ 10610625 (-)
G183528 NA other upstream 71307 10520717 ~ 10521410 (-)
G183650 NA other upstream 924698 11374108 ~ 11374615 (-)
ost4 NA other upstream 2457892 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 2511088 12960498 ~ 13007868 (-)

Expression


Co-expression Network