lama4 (lama4)


Basic Information

Item Value
gene id lama4
gene name lama4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 1604943 ~ 1660558 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782072.1
ggagggagggagcgagagaaagggaggaagtCCACACAAGTTTGTTTTACAGGACTCTGGCCGGGCCAGGACAAGACGCAGTGCTGCATCTGGAGGTCGGAGCAGCGGAGAAGTGAAGCCAACGGTGCAGCCGAGCAAGAGGAGCTGCCCAGAGACGCTCCTACAGCcaggagaaacagacagaaagggGGGATCAGTGCTCTACTGggcaaacacacaaatatggCTGCTAAATCCCTGTCCTGCCTTCTCTGCATCCTATCAGGGATTGCCTATCCAGCTTCTGCCGCCAGGCTGGGGGAACAGCAACAGTCGGTGCTGAAAGTGTGTGCAAAGGGGTTTTTCATGAGTGAGCAGAACATTTGCTTGCCATGTAACTGCAAAGGCCAAGCCGACTACTGTGAAGACATCACTGGCGTTTGTTTTAACTGCAAGGACCACAGTACAGGTGATTTCTGTGAAATGTGCGAGGATGGCTACATGCTGGCTCCCAGCCTGGACGGACGCCACACCTGTCGACCCTGCGCCTGCCCCCTCTCCGTCCCCACCAATAACTTCGCAGTGCACTGTGACAGAGGAGGTGCCATTCTGCGCTGCAAGTGCCAAGAGGGCTACGCCGGTCAGTTCTGTGAGAGGTGTGCTCCAGGTTACTACGGCAACCCGATGGCGATTGGTAATTCCTGTAAGAGATGCGACTGTAACAGCAACTCCGACCCTAACCTGATCTTCAGCGAGTGCCACAATGTGACGGGCCACTGCCAGCACTGCTGGGGAAACACCTCCGGGGCCAACTGTGAGAGGTGTGCCCCAGGTTTCTACGGCGACGCCATCAGTGCCAAGAACTGCAGAGAGTGCGAGTGCAATGAATGTGGCACCTCTTCATGCGACGACAGGAGAGGAGTGTGTCACTGCAAGCCAGGTGTCACCGGACGACTCTGCGACCAGTGTGAGGAGGGCTACTCTGGTTTCTCCAGCTGTCAGGGCTGTCGGAGGTGTGAATGCGGGCCAGCTTCCCTTCGTTCCACCTGCCATCATCTCACCCACAGCTGTCCATGCCGCCCGGGGGCCGGAGGTCGTTACTGCGAGCGTTGCCTGCCGGGCTACTGGGACTACAGCCCTGCCGGTTGCCAGAAGTGTGACTGTGAGAGCGGCCACTGTGATATGCATACAGGAGAGTGCCTGCCAGAGGCTGCAACAGTCAACCTGTGCAACAACAGTTGTGATAATTGCATTTGGCATCTAATTGGGGACCTGCGGCTGTCCAATAAGACACTGGACCAGCTGAAAGTCGGAGTGTTGAACATCTCCACTGGTGCTGCTGCCAACGACAGGCTCAAATACTACAACTACACTGCTCAACGACTGCagACTCAGTTTCTTGGCTGGAGAAACAAGTCCTCTGTGATGAAGGACCAGACTGGGGAGCTAGAGACGGCCACAGACGCTGTGGTGTTGGACATCAAACAGCTTGGAGAATCGGAGAGTGTGGTGAAGACTCTGGGGAACAAGCTGGACAACGACACGCTGGAGACGGTCACTCTGGCTGAGCAGCTCAGCACAAACCTCACGGATCTCAACCTACGCATCGAAGAGATGATCCATGACTGGGAGCTGTACAGTGTTCACCAGGACGTGGATCCCGAGGTGGCCAGGCGGAACACTGAGCGGGCCCAGGGAATGGTGGCCTGGATGAGGACACTGGACCTGTCCCCACGAGAGCCCATCGCCACGGACGAGTCGACTGAAGCCCATGACTTGCTGAGGCGTATCCGTCAGATGGAAAAGAAGTTGATGAGCACAGACGGCCGCCTGCCGCCTGTCAGGGAGATCCTGTCCCGCTTCTCCACCAAGCTGTCCGACGCCCAGGGCTCTCTCCAGCTAGCAGCCAGCACCGTCCAGCAGACGGAGGACAGGAACAGAGCCAGCATCCTCAAATTCCAGAGGAATGAGGCAAAGCAGCAGAGGCTGACAGAGGACCACGCTGCTGTCAACGATACACTGGAAATCGCCAGAGGCTTCGTCTCCGAAGCAGAGAGGACTGTGGCTGAGGTGGATGCTATGGTGCAGAACGTGAGCGGATACCATGCAGCGATCGATGGCGCCAGCCAAAAGCTGATGGAGAAGACTGAGCGTCTCTCGCTGGCTGACAGAGATCTGGTGCAGAGGGCAGACGAGCACGCTGACGAGCTGGACCGACTGGCCAACGAGTTGGAGGAGGACCTGAAGGAGAGCGACGCCAATGGCTTTGTGCAGAAAGCCATAAGTGCTGCCAACGTCTACAACAACATAGTGAAATACATCCACGATGCCAATATCACCTCGCTCACGACCCACAACTTATCCCAAAGAGCTGAAGATGCCATCGCTGGGATCAATATGCAGCTCGGGTACCTGGTAACAAAGAGCGACAACGTTTTCAAGGAGTCGGTTTCATTACGTTCAGAACAAATTGAGGTTGAAGCTGAAGTGATTGACAAGCTGAAATACATCGAGGAGACCAAAGAGACCATGGACCAAAACCACAAAAAACTTGCAGAAATAGTGGAGGATATCAGTGGAATTCATCCAGATAGAACACCACGTCGACTGGAGTTTACCCTGGAGGTGGCTGAGGGGACTCTCAACCGCTCAGCAGAGGTCCTTCAAACCATCACCCCCATCAGCAGCAAggtggaggagtgggccaacAACATGAGGAACAACGAATACTCCACAGCTGCTTATGAGCAGGCCATCCAGTCTGCCGGAGAAGCAGTGGACAACCTGAATGTTCTCGTTCCTAAGCTGCTGGACAAGCTGAAGGTGGTCGAGCAGAAGAAGCCCGTCAACAACGTGACCACCAACATCATGAGGATCAGAGAGCTTATAGCCCAAGCCAGGAGTGTGGCCAAGAAAGTCCAAGTGTCCATGAAGTTCAACGGTCAGTCCTCAGTGGAGGTTCATCCTCCCAGCAACCTGGAAGATCTGAAGACAGTGACGTCCATCAGCTTGTTCATGAGAGTGGACCCTGACAAGGATCCCATAGAGGACCGTTTCATCCTATACCTGGGAGACAGAAATGGTAGGAAGGATTACATGGGACTGGCTATCAAGAATGACAACCTGGTGTACGTGTACAACCTCGGGGGGGAAGATGTTGAGATCCCATTAGGTTCCAAGCCTGTCAGCCAATGGCCCGCAGTCTTCAACTACATCAGAGTAGAGAGGTTGGGCAGACATGGAAAAGTCTTCCTGACCATCCCCAGCCAGAGCTCCACAGACGAGCAGAAGTTCATCCAGAAAGGCGAAGCTCCAGGCACCGACTTGCTGTTTGACATCGACCCCAAAGATATAGTGTTCTTTGTTGGCGGCGTCCCAGCAGATGTCAGGCTTCCACCTCCGCTGAGTCTAGCACCTTTTGTGGGCTGCATCGAGTTGGGTTCACTGAACAACGACGTGATCAGTCTATACAATTTCAAAGAGACTCACAAAATGGATGTCATCACGTCAACACCGTGCTCCAGGTACAAGTTGGCATTTTCCCAGAGCCGTATTGCTAGCTACCTGTTTGATGGAACGGGCTACGCACTCATCAACAATATCGAGAGGAGGGGCAAATTTGGTGTTGTCACCAGATTTGATATTTCAGTGCGAACTGTCGCAAACAATGGTGTCCTTTTCCTCATGGTCAATGAGGACAAATTCTTCCTTTTAGAGATAAAGAATGGCTTCCTGCGCCTAATGTACGACTTTGGCTTCAGCAAAGGGCCAGAACTTTTGGAGAATAACTTACCCAAGCTGCAAATAAATGATGCACGATACCATGAGGTGTCAGTGATCTACCATCAGTCAAAGAAGGTTATCCTACTGGTGGACAAGAGCCATGTCAAATCTATGGAGAATCCAAAAACCACGCTTCCTTTCTCAGATATCTACATAGGTGGAGCTCCCTCCAGCATTCTCAAATCCAGGCCTGAGCTGTCTGCTGTCGTCAGTCTGAAAGGCTGTGTGAAAGGTTTCCAGTTCCAGAAAAAAGACTTCAATCTGCTGGAGGAGCCTGGCACCATCGGCATCAGCAGCGGCTGCCCTGAGGAGTCCTTTATGTCCCGTAAAGCCTATTTCACCGGAGAGAGCTACCTGGGATCCACAGCAAAGATTTCACCCTTCGACAACTTTGAGGGAGGACTCAACTTCAGAACGCTGCAGCCCGGCGGACTCCTGTTCTATCTGAGTGACGGGtctgATGAGTTCAGCATCTCCCTGGAGAATGGAGCCGTGGTGATGAACGCCAGAGGCACACGAGTTAAATCACACAAGAAACAATACAACGATGGAAGGACACACTTCTTAGTGGCCACAGTAAACAGTCAGAAGTATTCACTGGTGGTGGACGACAAAGACAAGCAGGAGAAGAAACGTCCGTCATCTGCCACACGATCCTCATCAGGTTCTGCTGTGAAGACCTTCTACTACGGAGGGTCTCCAAGCAGCAGCTTCAAGAACTTCACAGGCTGCATCAGCTATGCCTACATCAACAGACAGGACAGGGACATTGAGCCTGAGGACTTCCAGCGATACACTGAGAAGGTCCAGACCTCCCTGCAGGACTGTCCAGTCCAGCGCCCCCCTGCTGCTCTGATGTCAAGGCACAGGGAGCACACTACCAGAGCCAAACAGAGCCAATCACAGAAGGTCAGCAGCCTCCCTCTGGGCCTGATGGAACTGAAGCGTGATGACCAGGAGCCATCAGAGCTGAACATCAAGCCCTGCTACCTCTCCTCAAGTCCCAGATCAACCCGCCAAGCCTTCCACTACGGCGGCATTGCCAACAGCAGGCAGCACTACACAGACCTTCCCGACTCCCTCTCTGAGAGGTCCCACTTTTCCTTGTCCCTGAAGACCCACTCATCCTTTGGCCTCATCTTTTATGTATCGGATGTCCAAGAGGACAACTTCATGGCTCTCTTCCTGGCCCACGGGAAGCTCGTGTACACCTTCAACGTAGCCGACCAAAGAGTCAAAATCAAGAGCGAGGAGAAGTACAATGACGGCGCGTGGCACAATGTTATATTTATCCGTGACGGGAGTACGGGGCGGTTAATAATTGATGGGCTCACAGTGCTGGAAGACAGAGCTCAAGGAAGCAACGTCTCCTGGCATGTCAGCAGTCCTCTCTATGTCGGAGGAGTTCCTCCAGAGAGAGCCCAAAAGAATATTCAGAGGAACTCTGCATACAGCTTCACCGGCTGTCTGAAGAACCTTCAGCTTGACGGGCAGTGGCTGTCCTCTGTGGCCGAGACTTTTGGGGTCACGCCGTGCTTCGAGGGACTCTCTGAGGCGGGAACATACTTCTCAGAGGAAGGAGGATATGTCGTGCTGGATGAAACATTTGACCTCGGGCTAAGGTTTGAGCTAGTGATGGAGGTGCGCCCCCGTGTGGCATCTGGGGTGCTACTGCACGTGCGCACAGCAGAGGGCTATTTCACTATGTACATTCACCACGGAGAGGTGGTGGTTCTTGTGAACGACGGGTCTCATGAGTTCTTCACCAAGGTGTCACCGGTACAGGGTCTGTGTGCTGGCAACTGGCACAGAATCACAGTGATCCGGGATGCCAATGTTGTCCAGCTTGATGTGGACTCTGAGGTCAACCATGTGGTGGGACCTCTGAACCCCAGCTCTACAGATACCAGGAAGCCGGTGTTTATTGGTGGAGCTCCAGATCTTTTCCTGCCAGAGAGCATCGCCACCAGGAAGGCGTGGGTGGGCTGCATGAGGAACCTGACCATCAATAACAGCCGAGTGAGCTTCAGCAAAGCTGTTCTGGTCAGCGGAGCGGTCAGCGTTGGAACCTGTCCAGCAGCATAACACTTCTGTCAACGCCATCACTTTCCCCAAATACAGCACTGACCAAACCCATTAAGGCTACATTCGcaccgctacgttttggtttttaagtagagttttgagccaaatgCGATCTCCAAGTACAAtacacaagtgtttttagctccagtagtaGAACTAATCTCCGTGTAAACTAACACGCCAAAACctcatcaacattctggtatactAGGCACAAGcaggaggcagcgtggagaCTCCGCCCGCTGCTGGTAGTTACCATGGGTTGCGTCTGAAATCGCATACGCTGCACTACATACTGAGTgctggaattactggaattgttgggtctttgtaaattatagagtgtggtctagacctactctatctgtaaagtgtcttgagataactcctgttatgatttgatactataaataaaattgaattgaatactcAACATGTATACTATCGTTTAACAtacttttgtgtaaataaacagtagtgtgtATCTTTTCGGGCGCACTGAGCTGTAATTTTCAACGTCACTTCCTGAGATCCTCCTTGCCGTTGAAGTTAAATTACTTATTAAATTATTGAAATAGATAAATAATTAGACTAAAAGTTGTTTAAATATGTTGAAATGTAAATTAGAGCGTTATTGACATTACAGAGCTCTGTGGTTTCTGTCCGTTTGTCTGTCATGAACGTTGTCATTACTAacacattgcattgtgggatacttTTTCTGCCGTAGTGTCCAGtattgcatactgtaatattttaccaGAAATAGTATGCAATTTGCATACTATTGGTTTCATACTAAGGTTTTAGACATACTAAAAACTCTCACATACCGTTTTAGCTACTAAATAGCATGTAAGTGTAGAATTTCGGACGCAGCCATGGTAACTTTAacttagtctcagagaacgagatgTCATGACCCAAGCAAAACGTTAGCGTCagtgtcggtgttgccaaaggtctccgtttgcagccgttgagactgcaacacagccccgcagattccaaaccaaaacaggtcagaagtgtttccaaatgtctccggtt

Function

symbol description
lama4 Predicted to enable signaling receptor binding activity. Acts upstream of or within several processes, including endothelial cell development; muscle attachment; and notochord development. Predicted to be part of laminin complex. Is expressed in several structures, including cardiovascular system; head; mesoderm; pectoral fin; and trunk musculature. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1JJ. Orthologous to human LAMA4 (laminin subunit alpha 4).

NR:

description
laminin subunit alpha-4-like

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0016203 muscle attachment biological_process
GO:0030334 regulation of cell migration biological_process
GO:0030903 notochord development biological_process
GO:0005606 laminin-1 complex cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K06241 LAMA4; laminin, alpha 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782072.1 True 6900 mRNA 0.51 40 1604943 1660558

Neighbor

gene id symbol gene type direction distance location
tube1 tube1 coding downstream 27480 1540093 ~ 1577463 (-)
si:dkey-119m7.4 LOC100698612,LOC104922931,LOC102792392,LOC102205754,LOC102310158,LOC101479579 coding downstream 50760 1522277 ~ 1554183 (-)
fynb fyn,LOC103458010,LOC106529781 coding downstream 88920 1399499 ~ 1516023 (-)
LOC120547163 LOC104959543,LOC108248898,LOC106958584,LOC103140751,LOC106529783,LOC106903326,LOC104922943 coding downstream 210828 1391056 ~ 1394115 (-)
traf3ip2a LOC102783323 coding downstream 219221 1374632 ~ 1385722 (-)
LOC120547226 hs3st5,LOC102794156 coding upstream 375107 2035665 ~ 2163743 (-)
LOC120546265 NA coding upstream 662106 2322664 ~ 2325278 (-)
frk frk,LOC102794634 coding upstream 698875 2359433 ~ 2384085 (-)
col10a1b col10a1,LOC104966941,LOC107384801 coding upstream 740176 2400734 ~ 2407155 (-)
ufl1 ufl1,LOC104942535 coding upstream 929904 2590462 ~ 2613535 (-)
G181564 NA non-coding downstream 118 1590281 ~ 1604825 (-)
G181584 NA non-coding downstream 75226 1529245 ~ 1529717 (-)
G181576 NA non-coding downstream 217101 1387574 ~ 1387842 (-)
G181575 NA non-coding downstream 217628 1387068 ~ 1387315 (-)
G181554 NA non-coding downstream 360468 1244156 ~ 1244475 (-)
G181597 LOC104947167 non-coding upstream 21483 1682041 ~ 1682416 (-)
G181599 NA non-coding upstream 22481 1683039 ~ 1683419 (-)
G181610 NA non-coding upstream 135698 1796256 ~ 1796671 (-)
G181612 NA non-coding upstream 143674 1804232 ~ 1804511 (-)
G181620 NA non-coding upstream 180830 1841388 ~ 1841599 (-)
G181297 NA other downstream 965430 638810 ~ 639513 (-)
G181206 NA other downstream 1525633 57976 ~ 79310 (-)
G181196 NA other downstream 1556190 47081 ~ 48753 (-)
G181860 NA other upstream 1715207 3375765 ~ 3376108 (-)
G181919 bach2 other upstream 1948289 3608847 ~ 3610329 (-)
srp9 srp9 other upstream 2231079 3891637 ~ 3893175 (-)
G182061 NA other upstream 2246059 3906617 ~ 3912279 (-)
G182059 NA other upstream 2247989 3908547 ~ 3914015 (-)

Expression


Co-expression Network