XLOC_004932 (si:ch211-27e6.1)


Basic Information

Item Value
gene id XLOC_004932
gene name si:ch211-27e6.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 41348969 ~ 41369866 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009684
ttattttatttattttaattttgggaAATTGTTTGTGCCTtttttgaacatttgagtttgacTAGGAgcttttgttctatttttttttttttttgctattttgttcTGCCATTCTAAAACATTGAAGTGTTAAATTAATTtctatattaggaaataaaacctTTCTGGGTGTTCCTGCCTATACATTCAGTATGAGTAAAATACTTCAGTTCTTTTAAAAAcggatactttaatacttttactcaagtcttaCTGGAATTGGTGACTTGTGGTAATTTTTTTCAGTatctacttttactcaagtatggttTTCAGGTATTTACACCTCtggaaatcagaccttaaacatggcaattttataatggaaagacattTCTCCGGAAGCGCTGGATGaaagtttaaagtctgtgtgcatatggcccattgtgttgtttcagctcattttaaataggtagttagAACAAAAAGCAAGCATATTTTttcagcactgtaaaaaatgcagggttccacccAATTCCAGCAtgctgtctcaacacaaatcaattaagtttactttattgtttttactaaattaaattggactgaacataaaccaattaagttgtcccccccaaaaaaaactcaGTAATTGTTGAtgcaactcattttaaataagtataaaCAAGGAGCAcatctggtttcctccacaggtgatcatgagtgtgtgtttgtgtattgtcAGAGTAATGATGCTGTGTTTAAAGTCTCCTGAATCAAACAAGCGTCGCTCAGGTGTGATTTCTGACACCTGAGCTGAAACTCCAGCAGCTGCACAACCTCTAACAAACACAAAAGCAGCATCAGTGAAGGTCTGGAAGGAAGATTTCCAATGCTTCTCAAACCTCATAAGGTGTTTATAATGGGAAGCAGCTCTGGAAAAGTCTTACCCGAGTCTTCCTCTTCCAAACGAGGATATTTTTGCCTCTTCAACTCGATTGTGATCTTCAACAAACAAGAGTCTGAGGGCGAGAAGTGTGTGGAGAAACAACAAACCGGGCTTTGGAAGAAGAGAAGCGACGGAGGAGCTTCAGGAGAAGAGCTTCATCTGGAGGAAAATATTGAGAATCGCAATGCAAAGTTCCGTGCCAAGTTTGATCCACGCGTCACCGCCAGATATGAGATCCAGGCTCTGATTGGTCGTGGCAGCTTCAGTCGTGTGGTTCGCGCCGAGCACAAACAGACTCATCAACCATTCGCCATCAAGCTCCTAGATCTCAGAGCTCCGGAGGGTCTCGAATCCTGCCAGGCGGAGCTCAGGGTTCTTCGACGGGTCAACCACCCCAACATCATCCGCCTGACGGAGGTCTTCCAAACCCCACACCGCGTCTACCTAGTCCTGGAGCTGGCCACAGGTGGAGAACTGCTGGAGCGAGTGCTTTCCCGAGGAACATTCAGAGAACGGGATGCAACCAAGGCCTTATTGATGGTAACAAGTGGCCTGGCGTACCTGCATAATCTGGGTGTCATCCATAGAGACCTCAAACCCGAAAACCTGCTCTACTACCATCCAGGACAGGACTCGCGGCTGATCATCACAGATTTCGGGCTGGCCTGTTGGGATAAGTCCATACAGAGGGATGATCTGGAGTTGACTGTGGGATTAGAGGAGAAAGGTTGGGCGTTGAGGACACTCTGCGGGACGCCTGAATACCTGGCACCGGAGATGTTGGCGCGGAGAGGCTGTGGCAGAGCGGTGGACATGTGGGCGCTGGGCATCATTACATACGTCCTGCTGAGCGGATCATTGCCCTTCGACCACAGCAGCCGAGCCAAACTCTTCAGGGCCATCCTCAAGGGCTCATACAGCTTCCACGgggagCCGTGGCGGTCAGTCTCATCTCTGGGCAAAGGCTTTATCAATGGGCTCCTGACTGTGGTCCCGGAGCAGCGGATGAGCGCAGAAGAGGCTCTCCATCACCCCTGGCTGGTCAACATGGCGGCATGCTCCTCCAACAAGAACCTGCAGCGCTCCATATCCAGAAACCTCCAGCGCCGGGCATCCCGCACATCCTCCCGCTGCCCCAGCTCTGCTTCTGGATCACAGGCATCCAGGAGCTCCAGCTCACGTTTAGGCCTCAGAAATGGCTCACGGTGCCAGAACATCAGCACTGTTAGTGAAGGTTTAGTTTGTTAGTAGGATGGACTCAGCGTGTAAGGTATAATAAACAGAACAATGTTGTGCAGTGATGTGGATGTTAATATAGttatcgttcattcattcatttcccttcagcttagtcccctatttatcagtagtcaccacagcgaaatgaaccaccaactattctggcatatgttttacgcagcgtatgcccttccagctgcaacccagtactgggaaacaaccatacactctatAGTTATCATTACAGTCATTTAAAATCAGAGGGATTATGGAAATATATCAAATCAATTACCTTGTAAGTGGACATGAATGAAAGACTTTATCTCCTTTATTAAAATTCCGTCCTTTAATAAATtcgtatttgtttaatttcaaagctgaatttttcgCATCATTATTAGAGCC

Function

symbol description
si:ch211-27e6.1 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PSKH2 (protein serine kinase H2).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-569 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PSKH2 (protein serine kinase H2).

Ensembl:

ensembl_id ENSDARG00000099898

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009684 True 2569 mRNA 0.45 3 41348969 41369866

Neighbor

gene id symbol gene type direction distance location
XLOC_004931 NA coding upstream 54806 41248760 ~ 41294163 (+)
XLOC_004930 NA coding upstream 105687 41156859 ~ 41243282 (+)
XLOC_004929 NA coding upstream 234891 40684766 ~ 41114078 (+)
XLOC_004928 LO018644.1 coding upstream 688179 40529226 ~ 40660790 (+)
XLOC_004926 CR847968.1 coding upstream 830689 40205995 ~ 40518280 (+)
XLOC_004933 NA coding downstream 43646 41413512 ~ 41415285 (+)
XLOC_004934 epc1a coding downstream 50489 41420355 ~ 41468926 (+)
XLOC_004935 FP236323.1 coding downstream 90652 41460518 ~ 41460634 (+)
XLOC_004936 kif5ba coding downstream 140626 41510492 ~ 41551599 (+)
XLOC_004937 NA coding downstream 210935 41580801 ~ 41582798 (+)
XLOC_004939 NA non-coding downstream 587072 41956938 ~ 41959729 (+)
XLOC_004941 NA non-coding downstream 1030383 42400249 ~ 42407668 (+)

Expression


Co-expression Network