clic5b (clic5,LOC104958973,LOC107378135,LOC106964163,LOC103355727)


Basic Information

Item Value
gene id clic5b
gene name clic5,LOC104958973,LOC107378135,LOC106964163,LOC103355727
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13229966 ~ 13249155 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782214.1
GTCAGgcagaggcaggcagactgTGTGCCAACACTTCAGCACTCTACAAACAAAACCAACCCAGCAAAACATGGAGAACATATATGAGACCGTAGACGAGAAAAGTGTGCATGAAGAGCGCCCTGATGGAGCCGACAGCCCCGACCCAGAGCCCAAATACGAGAACTCCGGCGGTGCGAGGGAACGGCTGTACAGCGAAGTGCAGGTCCACGTCTGTGCCGAGGAAGAGCGCAGCTCGCCGGTATACATGGACATCAGAGACGGGGAAAAACAGAGCAGCTCGTCCTCTTCATCCAGCGACGACGAAGAGGCTAAAGCAGAGAGAGCGGCAGAGGTGAGTGTGGAGCCGGTGGTGCAGGTGGAGGAAATGAACGGCGAGGCGCACGACGGATCCAGGCGCTCATCGGCCTCCTCAGCATCCTCCGCTTCCCCGGGAGACCCGTGCGACGACCCGCCGATCCAGCCGAGGATCCAGGAAGAGGAGAACGCGGAGAATGGGATGCTGATGGCATACACACACCCCAACAGTGACAGCACGCCGGAGGAGTCTGTCGACTACAGCCTGAAAACTCTGGAGAATGTCACTGTGGATGAGAGCAGCGCAGCGCCGGCTGACCCCAGCCAGCCTGACATCTCTCTGTTCGTCAAGGCAGGCAACGATGGAGAAAGCATCGGCAACTGTCCCTTCTCTCAGCGCCTCTTCATGGTCCTCTGGCTCAAAGGAGTCGTGTTCAACGTCACCACCGTCGACCTCAAAAGAAAGCCAGCAGATCTGCACAACCTGGCTCCAGGGACACACCCTCCTTTCCTGACCTTCAACGGAGAAGTCAAGACCGATATCAACAAGATCGAGGAGTTCCTGGAGGAAACGCTCTGTCCTCCAAAGTATCCCAAACTGGCCGCCATGCAGCGAGAGTCGAATACAGCTGGAAATGACATCTTCGCCAAGTTCTCAGCCTACATCAAGAACACCAAACCAGAGGCCAACGCCGTTCTAGAGAAAGGTTTGACCAAGGCCCTGAAGAAGCTGGATGACTACCTGAACAGCGCCTTGCCAGATGAGATCGATGCAgacagcatggaggaggagaagggctCCAACCGGTGCTTCCTCGACGGAAACGAGCTCACTCTCGCAGACTGCAACCTGCTGCCCAAACTGCACATAGTCAAGGTTGTCGCTAAGAAGTACCGCAACTACGACATCCCCTCAGACATGTCGGGGGTGTGGCGCTATCTGAAGAGCGCCTACACGCGTGATGAATTCACCAACACCTGCGCTGCTGACTCCGAGATCGAGACCGCCTACAAAGACGTGGCGAGGAGACTGGCCAAGTAACTCGCCAACCGACCCCAAACCCACATCTCTTTTCAACATACACATGGGACTGTCCTTTTCTAGGCGCCTTCAGTGGCATTTTCAGGAAGCAGAAATCCTTTCTGTCTGTCCCAGTAAACAGGTCAGATGTTGCAGAAGTCTGTGTTATTGGGTGGCTTATAGGCTACTGCTTTACAGCTTTATATGGTTTTGCAATTACAGAAACGGAGCAGAGGATAAATCAAGCACATTTAACTTAATTTACAGGGCTTCAAACCACATTCAAATGTTGCTGCTGTGAAACTTCTGACATAACACTCTCACTCAAACATGATTGTGTCCCGTCTGTATTTATTTCTCATAACACAAAGCTCCCTTTCATACATACTCCACCGGTCCGCACGGCCAAACATTTTACTAGCTGCTGATGTCAGGGTCGTTCACTTTATTTATTCCTAAACCCACATAAGTCTAGTCTGACTCCGGTGTTTATTATCAAGCTTTGGCTCCTGGGGAGACACCTTGATTCATTTATGATTGATAATTTGGCGCTAATCGTTTAGCTGAATATGACTGTTCTGCGATCTGCCGATCCAGTTTTGATTGTCATTACCGTCGCTGGTGCTGAAGTCCTTTTTGTTTCCTCGAGCTTACACGTATCTTGAAATTCACTCCTGCTTCTGAAAGATTGATTTGAAGAAAGATTGCTTTTAATAACATGTTTATAAGCTCGATAATGTTAGTTTGAGAGAACAAGATTTAGCTGACGAGGGCATCGATAGCTTAGAACAAAGCTTCTGATTTGTTTGCATGCATGAATCTGTTTGAAATTTTAATATTTAAGAGCTTCTTTTTAAAGATATGAAAAATCCTCAACTatgtgcctttattttgaaagtatgAAAAAATCCATGCCAATGTCacattctgaaaaaaaaaaaaaaaaaagtaaagcagCCAGAGCTGAGACATTTGTTCTGCCTCTAGCTGTTAGTATTCAGTCTAGGTATTGATTTTGTCTTAAGTTACACATGATATTATGAATGGAGAGAGTATTTATTTAGCAGCCCCAATCAGGCCTGATTAGGTAGAGCCATTAGTGCCTGCGATGAAAAGCGTCTTCCAGGCCAGGTCCACGATGGTCAGGAGCCGCGCCCTCCAGCCCTTCATCAGAGAGACATTTCCTCCACTCTGAGGAGCCTATCAACATCCACGGGCTAAAGTTCAAGTTCAAAAGTTTCATTGTCCACGCAGAGGAGGgatggaaatttgtcttggggcTTATCGTCTTTGGCTTGGTGTCAGGCTGCAACTATAGCGAGACTTCCTTGAAGAACCATAAGGCTCTTGTGTGGTTTGGACAAACATTTGATATGAAATTGGAGCATGATGACTGAGAGCCTTGCTCATTGCAAAGCtccacaaataaaataatattttcacAGA
>XM_039782216.1
GACTGACACCTGTTTTCCACTTTGTGTCAGTCAGTGAGAGCTAGCTCTGCTCTCCACCTGTGTTTAAATCAGAGCGCAAGGCTCTACCTGCCACCTGGACAGGACACAAACAAGGGAGAAGACACCAAAAAGGTGGTGGAGATCTTGAATCAGAGAAACCAAAAAACAGCGTCTTAAGGTGTGAGGGATCACTGTCAGCCGAGAGAGGATAATCTGGGTTTTCTTCATCTTTTTCTGGAGGATGTAGACCTCCAAGGATAAGGACTGcagttaaaaaagagaaaagaatcaAAGTGACAGCCAGAACCAGGCATCATGTCCACTAACAGTCAAGACAGAGACCCTGATATCGAGCTTTTTGTCAAGGCAGGCAACGATGGAGAAAGCATCGGCAACTGTCCCTTCTCTCAGCGCCTCTTCATGGTCCTCTGGCTCAAAGGAGTCGTGTTCAACGTCACCACCGTCGACCTCAAAAGAAAGCCAGCAGATCTGCACAACCTGGCTCCAGGGACACACCCTCCTTTCCTGACCTTCAACGGAGAAGTCAAGACCGATATCAACAAGATCGAGGAGTTCCTGGAGGAAACGCTCTGTCCTCCAAAGTATCCCAAACTGGCCGCCATGCAGCGAGAGTCGAATACAGCTGGAAATGACATCTTCGCCAAGTTCTCAGCCTACATCAAGAACACCAAACCAGAGGCCAACGCCGTTCTAGAGAAAGGTTTGACCAAGGCCCTGAAGAAGCTGGATGACTACCTGAACAGCGCCTTGCCAGATGAGATCGATGCAgacagcatggaggaggagaagggctCCAACCGGTGCTTCCTCGACGGAAACGAGCTCACTCTCGCAGACTGCAACCTGCTGCCCAAACTGCACATAGTCAAGGTTGTCGCTAAGAAGTACCGCAACTACGACATCCCCTCAGACATGTCGGGGGTGTGGCGCTATCTGAAGAGCGCCTACACGCGTGATGAATTCACCAACACCTGCGCTGCTGACTCCGAGATCGAGACCGCCTACAAAGACGTGGCGAGGAGACTGGCCAAGTAACTCGCCAACCGACCCCAAACCCACATCTCTTTTCAACATACACATGGGACTGTCCTTTTCTAGGCGCCTTCAGTGGCATTTTCAGGAAGCAGAAATCCTTTCTGTCTGTCCCAGTAAACAGGTCAGATGTTGCAGAAGTCTGTGTTATTGGGTGGCTTATAGGCTACTGCTTTACAGCTTTATATGGTTTTGCAATTACAGAAACGGAGCAGAGGATAAATCAAGCACATTTAACTTAATTTACAGGGCTTCAAACCACATTCAAATGTTGCTGCTGTGAAACTTCTGACATAACACTCTCACTCAAACATGATTGTGTCCCGTCTGTATTTATTTCTCATAACACAAAGCTCCCTTTCATACATACTCCACCGGTCCGCACGGCCAAACATTTTACTAGCTGCTGATGTCAGGGTCGTTCACTTTATTTATTCCTAAACCCACATAAGTCTAGTCTGACTCCGGTGTTTATTATCAAGCTTTGGCTCCTGGGGAGACACCTTGATTCATTTATGATTGATAATTTGGCGCTAATCGTTTAGCTGAATATGACTGTTCTGCGATCTGCCGATCCAGTTTTGATTGTCATTACCGTCGCTGGTGCTGAAGTCCTTTTTGTTTCCTCGAGCTTACACGTATCTTGAAATTCACTCCTGCTTCTGAAAGATTGATTTGAAGAAAGATTGCTTTTAATAACATGTTTATAAGCTCGATAATGTTAGTTTGAGAGAACAAGATTTAGCTGACGAGGGCATCGATAGCTTAGAACAAAGCTTCTGATTTGTTTGCATGCATGAATCTGTTTGAAATTTTAATATTTAAGAGCTTCTTTTTAAAGATATGAAAAATCCTCAACTatgtgcctttattttgaaagtatgAAAAAATCCATGCCAATGTCacattctgaaaaaaaaaaaaaaaaaagtaaagcagCCAGAGCTGAGACATTTGTTCTGCCTCTAGCTGTTAGTATTCAGTCTAGGTATTGATTTTGTCTTAAGTTACACATGATATTATGAATGGAGAGAGTATTTATTTAGCAGCCCCAATCAGGCCTGATTAGGTAGAGCCATTAGTGCCTGCGATGAAAAGCGTCTTCCAGGCCAGGTCCACGATGGTCAGGAGCCGCGCCCTCCAGCCCTTCATCAGAGAGACATTTCCTCCACTCTGAGGAGCCTATCAACATCCACGGGCTAAAGTTCAAGTTCAAAAGTTTCATTGTCCACGCAGAGGAGGgatggaaatttgtcttggggcTTATCGTCTTTGGCTTGGTGTCAGGCTGCAACTATAGCGAGACTTCCTTGAAGAACCATAAGGCTCTTGTGTGGTTTGGACAAACATTTGATATGAAATTGGAGCATGATGACTGAGAGCCTTGCTCATTGCAAAGCtccacaaataaaataatattttcacAGA

Function

symbol description
clic5 Predicted to enable chloride channel activity and voltage-gated ion channel activity. Involved in chloride transport and sensory perception of sound. Located in Golgi apparatus and actin cytoskeleton. Implicated in autosomal recessive nonsyndromic deafness 103.

NR:

description
PREDICTED: chloride intracellular channel protein 5-like isoform X1

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016020 membrane cellular_component
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05025 CLIC5; chloride intracellular channel protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782214.1 True 2764 mRNA 0.49 6 13229966 13249155
XM_039782216.1 False 2481 mRNA 0.45 6 13236578 13249155

Neighbor

gene id symbol gene type direction distance location
enpp5 enpp5 coding upstream 1488 13221106 ~ 13228478 (+)
irak1bp1 NA coding upstream 88445 13139981 ~ 13141521 (+)
tbx18 tbx18 coding upstream 163379 13056433 ~ 13066587 (+)
selenoi selenoi coding upstream 307410 12908967 ~ 12922556 (+)
agbl5 agbl5 coding upstream 322661 12889261 ~ 12907305 (+)
opn8a NA coding downstream 139660 13388815 ~ 13412812 (+)
opn8b NA coding downstream 172153 13421308 ~ 13431771 (+)
atad2b atad2b coding downstream 253489 13502644 ~ 13577416 (+)
gzf1 gzf1 coding downstream 621732 13870887 ~ 13875635 (+)
chgb chgb coding downstream 684678 13933833 ~ 13938559 (+)
G184000 phip non-coding upstream 57722 13170922 ~ 13172244 (+)
G183933 NA non-coding upstream 482299 12746084 ~ 12747667 (+)
G183896 ccnk non-coding upstream 526724 12701168 ~ 12703242 (+)
G183891 NA non-coding upstream 589888 12639318 ~ 12640078 (+)
G183890 NA non-coding upstream 592430 12629289 ~ 12637536 (+)
G184071 NA non-coding downstream 166085 13415240 ~ 13415570 (+)
G184074 NA non-coding downstream 184830 13433985 ~ 13434206 (+)
G184075 NA non-coding downstream 185057 13434212 ~ 13434504 (+)
G184078 mut non-coding downstream 193888 13443043 ~ 13449099 (+)
G184085 fkbp1b,LOC102794993 non-coding downstream 209447 13458602 ~ 13468087 (+)
LOC120546167 NA other upstream 221555 12946999 ~ 13008411 (+)
bcl11bb LOC103368061 other upstream 490582 12707218 ~ 12739384 (+)
ches1 foxn3 other upstream 1360774 11764143 ~ 11869192 (+)
G183540 sf3b6,pm14,SF3B6 other upstream 2563494 10622736 ~ 10666472 (+)
cdc42bpab fzd3,LOC103374788 other upstream 2830154 10236949 ~ 10399812 (+)
LOC120546706 wdcp other downstream 219080 13468235 ~ 13474159 (+)
LOC120546742 plcb1 other downstream 775329 14024484 ~ 14140769 (+)
G184231 NA other downstream 1113186 14362341 ~ 14381187 (+)
LOC120546619 LOC103359912,LOC102080314 other downstream 1144285 14393440 ~ 14424864 (+)
G184258 NA other downstream 1275981 14525136 ~ 14529370 (+)

Expression


Co-expression Network