LOC120546952 (LOC103369945,LOC104955612)


Basic Information

Item Value
gene id LOC120546952
gene name LOC103369945,LOC104955612
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15199429 ~ 15201090 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782233.1
tctTTGAATCCCAGAGTGGACGGGAGGTAATCCCCACCATGTGAGTGGGCGGCGCAGGTACCGGAGGCgtgttttttacttttcttttttccccccctatTATTCAAATGCTGCTGTACCTATAAAAAGAGTGCCTGCGTGCGTCAGATAGTTTTCTCCAATGGGCAAAGGTGACTAAATAGGCTACTTGTTGTCTCTTTCGTTGGCCCAGTCACATCCTATCGGTAGGTGAAGAGATGATGCACGAGCCTGGCGGTGTCCAAATGGCGAAGCATGCAGCCCTGTGCCTGATGATGCTGCCCCGGTTCCTCCTGGCCGCCCTCATGCTGTGGCTCCTGGATTTCTTGTGTATTAGGAAAAAAGTACTGCTGAAAATGAAAGGGAGGCAGGACAGCCCGGACGACCCGCCGGTGTGCGTCTCTGACTCTAATAAGATGTTCACCTTGGAGTCCCTCAGGGCCGTGTGGTACGGACAGAAATTGGACTTTCTCAAATCAGCGCACCTCGGGCGCGCGGCGCCCAACACCGAGGTGATGCTGGTCCAGGAGCGGCGGATGGTCCGGATCCTGGACTGCATAAAAGGGAAGAGACCGCTCATCCTTAACTTTGGAAGCTGCTCCTGACCGCCATTCATGACGCGCCTGGTGGCGTTTCAGCGCGTCGTGAGCCAGTACCTAGACATTGCGGACTTTTTAGTTGTATATATCGAGGAGGCGCATCCGTCGGACGGCTGGGTGAGCTCGGACGCGCCGTATCAGATCCCCAAGCACCGCTGCTTGGAGGACAGACTCAGAGCCGCTCAGCTGATGCTCGCCCAGGTGCCCGGGAGCAACGTGGTGGTGGATAGTATGGACAACTCGTCCAACGCCGCCTACGGAGCCTACTTTGAGAGACTTTACATCGTAAGGGATGAGAGAGTGGTATACCAGGGGGGCAGGGGTCCAGAGGGATACCAGATTTCCGAGCTTAGAGACTGGCTGGAGCAATACAGGAACGATCTGGCGAATTCCCAAACATCGGTGCTCCATGTGTAGTTAAAGATGCTCAACTGCCTGCTGCTCTGCCCATTCTGCTTTAGTGTCCAACTCACAGTGCAAATATTCAGATGCTGCTATCAAATGTTCACACACGGCACACTATGTTGTTAAGATATTCAGGACTCTTTGACAAATAGCCTAAAGTCATGTTCAAGCCTCAATGCAGGCTGTAGGCTGTTCTGTTGTGTTTGTCTTGACCTTAATTGATTGCTATTAGCGATTGTCTATTTTTTTGTATGGAAAAGTCTGGAATCATTTGAAACTGGATTCAATTAGGCCTAGCGATCACTATTTTTCCACAAtactggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcacgtgcgcgcgtgcgtgcgtgcgtgcgcgcgcgatCAGGCTAATGTCTCACTGGTGTTTCTGTGAAGTTCGGTTTTTAAAAGGCGAAGCCAGAAAACCGACACTGATGTTTCTGACACCGGGTCCACTTTAGCAGGATGCCTTCCTCAATGATCGATTGCCAAACGATGTAATGTTGAAACGATGTAActgaacaaaatgtttttaataaataccAGATCACACAGATTTACTGTTGACTTGTGGAACAAACACCTTAAA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: type III iodothyronine deiodinase-like

GO:

id name namespace
GO:0042446 hormone biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005886 plasma membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004800 thyroxine 5'-deiodinase activity molecular_function
GO:0033798 thyroxine 5-deiodinase activity molecular_function

KEGG:

id description
K07754 DIO3; thyroxine 5-deiodinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782233.1 True 1662 mRNA 0.51 1 15199429 15201090

Neighbor

gene id symbol gene type direction distance location
wdr20b wdr20,LOC104961916,LOC103369949,LOC101068631,LOC101475300,LOC102799324,LOC101173269 coding downstream 70936 15121829 ~ 15128493 (-)
LOC120546409 mdga2 coding downstream 269767 14792113 ~ 14929662 (-)
fkbp3 fkbp3 coding downstream 492993 14703467 ~ 14706436 (-)
arf6a arf6.2,arf6,arf6a,LOC106518576,LOC104956700,LOC101063995,LOC106608083,LOC105893149 coding downstream 519336 14677540 ~ 14680093 (-)
actr10 actr10 coding downstream 607194 14584030 ~ 14592235 (-)
slc25a47a slc25a47 coding upstream 71088 15272178 ~ 15276579 (-)
syndig1l LOC108231752,LOC106536771 coding upstream 146670 15347760 ~ 15384587 (-)
ino80 ino80 coding upstream 404978 15606068 ~ 15652295 (-)
vps18 vps18 coding upstream 452812 15653902 ~ 15659491 (-)
pigh pigh,LOC102778419 coding upstream 476780 15677870 ~ 15680252 (-)
G184420 NA non-coding downstream 25310 15173711 ~ 15174119 (-)
G184417 LOC101473650,LOC102776111,LOC103369946,LOC102310296 non-coding downstream 25789 15169136 ~ 15173640 (-)
G184404 LOC103369948,LOC101169258 non-coding downstream 60714 15132217 ~ 15138715 (-)
G184406 LOC107378075,LOC100701982,LOC107704376,LOC101474541 non-coding downstream 61116 15135469 ~ 15138313 (-)
LOC120546290 NA non-coding downstream 131145 15063838 ~ 15068284 (-)
G184452 LOC103369942,LOC106518591 non-coding upstream 82159 15283249 ~ 15288885 (-)
LOC120546341 NA non-coding upstream 495410 15696500 ~ 15700999 (-)
G184662 stx7 non-coding upstream 533328 15734418 ~ 15735282 (-)
G184668 ctgf non-coding upstream 571596 15772686 ~ 15775486 (-)
G184696 NA non-coding upstream 811410 16012500 ~ 16015535 (-)
rps29 NA other downstream 87950 15110240 ~ 15111479 (-)
LOC120547045 LOC103359896,LOC104919819,LOC100704859,LOC107378087,LOC104956714 other downstream 531828 14657177 ~ 14667601 (-)
naa30 naa30,LOC102795089,LOC104960600 other downstream 586483 14571380 ~ 14612946 (-)
G184299 LOC101066055,LOC100706360,LOC102203025 other downstream 701059 14472201 ~ 14498370 (-)
mfsd2b mfsd2b other downstream 1708286 13473683 ~ 13491143 (-)
si:dkey-177p2.18 LOC102081001,LOC102302990,LOC107088471,LOC105937616,LOC105357244,LOC102210773,LOC101470269,LOC104966503 other upstream 587736 15788826 ~ 15795638 (-)
LOC120546224 NA other upstream 864764 16065854 ~ 16068309 (-)
LOC120546332 akap7 other upstream 945500 16146590 ~ 16188330 (-)
snap91b LOC101475403,LOC107094487,LOC107378032,LOC106520033,LOC108247682 other upstream 1289560 16490650 ~ 16517874 (-)
gpatch2 gpatch2,LOC102785715 other upstream 1624562 16825652 ~ 16835983 (-)

Expression


Co-expression Network