si:dkey-71h2.2 (LOC102796288,LOC101475494,LOC104959816,LOC106959609,LOC103138648)


Basic Information

Item Value
gene id si:dkey-71h2.2
gene name LOC102796288,LOC101475494,LOC104959816,LOC106959609,LOC103138648
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18062720 ~ 18101094 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782307.1
ACGGTGCAGTAGGTGCACGTGCTTACCCTCAGCTGGTTACCAGTTTATGAGTGGGGAGAGAAAACGAGAGCGATTCAGGGTGGGAACTTATATCAGTGGTCTCTCTCTTCGCCTCTTCCGTCTTTGGCGCATCCTCCGTCGAGCCCAGTCTGTTGTATTTACCTCCCTGTGGTAGAGAGACTGGGGAATCCACCTGGCGGAGAGCAGACACACCTCGGGATGGATGCCCTGAAATCCGCCGGCAGAGCGATTATCAAGAGCCCCGGAGTTCCGCGGCACACATGGGGAACTTCAAAGCACGAAAAGCTACCAGAGAACTGGACAGATACCAAGGAGACTCTGCTGGAGGGGATGGTGTTCAATGTAAAGTACCTGGGTATGACTCTGGTGGGCCAGCCCAAAGGAGAGGACATGGCGTCAGCTGCCATTCGCAGAATTGTTGCCACGGCCAGAGCCAGTGCTAAGAAGTTTCGGAAAGTAACGTTGACGGTCTCACCAAAAGGCATCATcatgacagacacagagactaCAGACCTCATAGAAAATGTCTCCATATACAGAATCTCGTACTGCACAGCAGATAAAACTCAGGATAAGGTCTTTGCATATGTCTCTCAGAGTCCGTTCAATGAGACCCTGGAGTGCCATGCATTTCTCTGCCAAAAGAAGAAGATTGCTCAGGCTGTGACATTGACGGTAGCCCAGGCCTTTAAAGTAGCCCTCGATCTTTGGGAGATTGCTCAGGAAGACAAAAGCAAGAAGGCTAGGACCTGCTGTTCTTGTGCAGCAAGCAAAGGGCAGACAGAGACAACTGACACTCAGTGTGTTCCAGCAGATCTCCCAGAGGCACACAACCCTGTTGGGATTGAGCCAAGTCTCCGGAGGCCCTTCTTCTCTGCATCACTCAGCTCACCCTCGCCTCGCAGTAACCCTACTCGAAGGCGACCAATCAAACACGACTCTTGGGATGTGGAGGATGGAATCGATGATCCGTTCTCAAGaCTGGCCGAGCCCTGCTCCGAACCCGTCTCTGACAATGCAGCTCTGAGTGTCCGGGAGGTCTCCATCGAGAATCTGTTGTGCCACAATGAGTTTGAATAACACACGCAGGCAATAGCTTCCCAACTTACAGAACCACCGAAATGTGATGGAAATCATACCCCTCAGGCCCcaagaacaacaacaaatacCAAACATTACTTGAACAGATAGCAAAAACATATCATGCTTCCCGGTGAATCAGAGTGACTCTGTTTGATTTTCGGTGACCGCTGCAGAGAAAACAGAATGGATACCCTGATATTATAAACTGCTGTTTCTGTGAATGCCTGCCAGTCAACACACTCCATTCAGTCCTACAGTCATCTCCTGCCATATTCAAACTCTCACAAAATGCCAGATGAAAGATGTGCAAAACAGCATTGAAAGACCAGAAAGACCACAGAGTCTCCTtcttataaaaacaaatacttaATACTCACACATGGATTCCACTTGTAAATTCTGATGAAGATTTTCTCAGCATCAAGAAGTCCAGAGATGTGTGTACATAAAAGGCTGTCATCTCTTTCTCGAAGCTCTCTGATCTTGTCGTTTGCTTGAAGGAGTAACAGCTGCCAGTCTCAGCAGTCACTGGAAGAAGTCCAGTGTTAGAGGTACAAATCTTTAGTCATGATGTTTGATAAATTATGCGTTCAGCATTCGGTTAGTCCAGTGTTAGAGGTACAAATCTTTAGTCATGATGTTTGATAAATTATGCGTTCAGCATTCGGTTTGTTGTGCTGATTCAACCAGTTCTTTGAAGAATGAAACGGCATGCGTGTACCCATGTATCATCTTTTTTATTGATTGCAACATAAatgtgtcatttaaaaaaaaaaaaaagaatcaaccTGGGTAATCAAGGAAATGTTTCTGGAAGAGGTATACATGTAACCTTTACAGAGTGTGGTACACTGCAACATTTATTACCAACAAATCCCCACACAAGACTGCTTACTTTGTGTATCCAGGACTTTAACCTAATCTCTTTGCCCTCTTCAGCAGATAGATTTGCTCAGTTATCATGGAGATTGTTTAGTTTGTTATATAAGATGTGGGGGTGGCATCaagttataaaaaatatttg

Function

NR:

description
PREDICTED: low density lipoprotein receptor adapter protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782307.1 True 2128 mRNA 0.46 10 18062720 18101094

Neighbor

gene id symbol gene type direction distance location
xkr6b xkr6,LOC104922444,LOC102798941,LOC102196726,LOC102289544 coding downstream 182867 17825639 ~ 17879853 (-)
ccm2 ccm2 coding downstream 238203 17814475 ~ 17824517 (-)
sh3bgrl2 sh3bgrl2 coding downstream 272241 17783739 ~ 17790479 (-)
LOC120547258 NA coding downstream 282810 17767159 ~ 17779910 (-)
LOC120547353 NA coding downstream 299912 17762733 ~ 17762808 (-)
si:ch211-278j3.3 LOC100692210,LOC102294113,LOC101474259,LOC103355636 coding upstream 1168 18102262 ~ 18125572 (-)
snx17 snx17 coding upstream 40629 18141723 ~ 18172492 (-)
eif2b4 eif2b4 coding upstream 76319 18177413 ~ 18182615 (-)
baalcb LOC103363522,LOC102076438,LOC102297435,LOC101471426 coding upstream 97391 18198485 ~ 18203945 (-)
ptk2bb ptk2b coding upstream 192743 18293837 ~ 18314467 (-)
G185295 NA non-coding downstream 1372 18060389 ~ 18061348 (-)
G185294 NA non-coding downstream 4548 18057420 ~ 18058172 (-)
G185236 NA non-coding downstream 146192 17916141 ~ 17916528 (-)
G185200 NA non-coding downstream 371278 17687876 ~ 17691442 (-)
G185125 sgk1 non-coding downstream 466723 17593366 ~ 17595997 (-)
G185320 znf513,LOC102795572 non-coding upstream 36631 18137725 ~ 18140207 (-)
LOC120546287 NA non-coding upstream 82866 18183960 ~ 18186587 (-)
G185368 NA non-coding upstream 217302 18318396 ~ 18318711 (-)
G185376 NA non-coding upstream 295794 18396888 ~ 18397170 (-)
G185454 NA non-coding upstream 535290 18636384 ~ 18636662 (-)
G185233 LOC103372532,LOC104962272,LOC100693291 other downstream 149684 17911270 ~ 17913036 (-)
zgc:153284 NA other downstream 295810 17764805 ~ 17766910 (-)
tbpl1 tbpl1 other downstream 431369 17623124 ~ 17631351 (-)
LOC120547341 NA other downstream 793086 17266359 ~ 17269634 (-)
gpatch2 gpatch2,LOC102785715 other downstream 1226737 16825652 ~ 16835983 (-)
LOC120546829 LOC104964434,LOC104922426,LOC103363570,LOC107377518 other upstream 388721 18489815 ~ 18506198 (-)
LOC120546357 LOC106525279 other upstream 539327 18640421 ~ 18647401 (-)
abcd4 abcd4 other upstream 677036 18778130 ~ 18790373 (-)
LOC120546223 LOC102213764,LOC101481591 other upstream 803443 18904537 ~ 18907254 (-)
LOC120546238 efr3b,LOC101073163 other upstream 1232961 19334055 ~ 19354316 (-)

Expression


Co-expression Network