ube2j1 (ube2j1)


Basic Information

Item Value
gene id ube2j1
gene name ube2j1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 4407988 ~ 4475102 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782345.1
TTCCTGTTTACGTTTCCACAAATGACGTCACGCggataacatttaacaaacTGTTTCAAAACCGAAACAGCGCATAACTTGAGCAACAACTCTTCAATATTCTTGTGACGGATGGATTCAAATACCGTCTAGTGTACCTACATACTGGAACATCGTGGAGACTGAACGATCTACGTTTTCAACTGTTCTGCTCATATTTGAGGACCCGAAGGAAGCTAGCCGGGGCTGCTAGCTAAGTGAAGCTAACGTTAAGTAGGTAGCTGGGAGCTAGCTAGCCATTTAGCAACATTAACTCAACAGGACTTCATCTTTAACCAGAGTGCTCAACATCTGTTGGTATGGAGAATAAATATAACCTCAAGAGTCCAGCGGTGAAGAGGCTGATGAAAGAGGCTGCTGAACTGAGGGATCCCACAGAGCACTACCACGCCCAGCCACTGGAGGACAACCTCTTTGAATGGCACTTCTCCGTACGTGGGCCCCCAGATTCCGATTTCGACGGCGGGGTTTACCACGGCAGGATCGTGCTTCCCCCAGAGTACCCAATGAAGCCCCCTAGCATCATCCTCCTCACGCCGAATGGAAGATTTGAAGTTGGAAAGAAAATTTGTTTGAGCATCTCTGGCCACCATCCGGAGACCTGGCAGCCCTCTTGGAGCATCCGAACCGCCCTAATAGCTATAATCGGATTCATGCCAACAAAAGGAGAGGGGGCGATAGGATCTCTGGATTATACTCCAGAAGAGAGGAAGGCCCTTGCCAAAAAGTCCCAGGACTTCTGCTGTGAGGCGTGTGGCTGCTCCATGCGTTCTGCCCTCCTGGCTCTGACCCCCAACAGCAACCCCAGCGCAGAGGACCACAAGGCTAAAGAGCTGGCCCAGCAAATCAACTTCAAGGAAGAGTCCAGTTTATCCAGACAGGCAAGTGAGAGCGGAGGTGCAGAAAGCGAGCCTTCCACACTCACCCAGGAAGACGCCTCCACGTCTGCAGGCCAGGAAGCTTCTGAAGAGCCCCGGGCTGAGCAGGCAGAGGCGTCTCCAGCCACAGGAACAGTCGGGCCCCAGGCCCCCGCGGCCCCCGTCGTCGGCCGCCCGCTCAGCCCCCGGCAGCGTCGTGCCCAGCAGCACAGCCAGCAGGGCCAGAGAGACGGCAGAGAACCGGCCAGCAGGCCCGTCTTTGCCCCGACTCCTCGCCAACCTCAGGATGAAGGCCGCGCGGGCTCGGTAGCCCTCATCGTGGTGCTCACTCTGGCCCTGGCCGCACTCATCTTCCGCAGGATCTACCTGGCTCACGAGTACAAGTTTGACTACGAGCTGTGACCACACACACTTTGCTGTCCCTCCTCCTCACGCTCAAGTcatctcccccccccaccccccaccccaacaGAACTATGGCCAGCCGAAGTGGAACCAGAGCCGAGGCGGTGGCTGACACTGACTTCCTGCGCTCCCTGTTTGTCAGCAGAGGGTTCGGTCTCCGCTGAGGAGGGGGGGGACTTTCATTCCTGCAGAGGAGGCGCTCCCACTCTCCACAACACCTCCGGGGGTGTCTTTTAATCAATGTGAATTTTACTTTCCAGAGTGTCATGCATTTTTAAGAATGGGAagctttgttgtgtttgtgatcAGTTCAGCAGCTACACATGCCCCACGTACCCTTCCATAGAATAGTTCTGTCCTAGTGCTGCCACTTGTTCACATTATTTAATTGAAACTGCAATATAATATGTCAACAAGGTTTATGGGGGATTTTTCTATCAAAGTAATGAATTAATCATGGAAGCATCTGCACATAGTGTATGAGCTATAATTCTTTTTGGTTTGCTGTATCTTCCTGTTTGGTCAGGTCAGTCACACCTTACACGGCTCTATTGCAATTGTGCAAATGAAACAGCCACTGTGTAGTCGGTATGGAATTCAAGTCTCAATTCCGTATCTCACGTCGTAAATGGATCATATTGTGATTAATATATATTGTGATGAGGGGAAGGATTGATAAGAGCTGACGTCTCCCACATAAACAGGCAGAATGTTGCATTATAACTGACAAGTCTGATGTGCGTAGAGGTGTGTGTGGGGCGATGCATTTCAAATCAGAGTCTGCACAGTTAGCGACATACGAGTCCTGCTGCTGcctggctgcagggatttgaTGAACTGAAGTACAGTCGTACTGTAGGAATAGCTGGTAATCATTCATAAACCAATGCCGACTGCTTTACCAACGTTCGTATGTTACACCATGTTCCGTGACCACTGTAATGTGTGCCTGCAGGGGGTCGTTGGAGGGACGTTCTCACGCTTTCTACAAGTGAGTAGTCGAATTTCTGACACATGCCATCAGAAAGTGTGGCCCTACTGTAGCTAGgaataagaaagaaaaatagcAGCACTTCTGAAATTGCAAATTGTTGTTCCATGTGGGTTCCATTATAACACGTAGGCGCAGCGCCTTAGCcgaatgaagaggaaaaaaactatGCTGAGAGTTCTCTTGCTCTCATTTATGGTCGCGCCagcttctctgtcctctcctctgcgCGTTTGACCGAGGGCGGGGCTTAgctcctaaacacacacacacacacacacacagcagacagcagGGAGGCTGCGTTGGAGACACCTGCTTTTTCTGCAGTTGTCTTTGTTTGACACAACCACATCGCCTAAGCCCTCAGAAACCGAGGGAAATCCCTGAGAGAGAGGGCTACAGTCTTTATATGAAGTTTACCGTATAGgacattattcatttatttgtttattttgtgagcGTAGGTATGTAGATCTTTTAAAAGGcatgtttatgtttaaataaagaTACCTATACAAGCAA

Function

symbol description
ube2j1 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human UBE2J1 (ubiquitin conjugating enzyme E2 J1).

NR:

description
ubiquitin-conjugating enzyme E2 J1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10578 UBE2J1, NCUBE1, UBC6; ubiquitin-conjugating enzyme E2 J1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782345.1 True 2838 mRNA 0.50 8 4407988 4475102

Neighbor

gene id symbol gene type direction distance location
LOC120547149 LOC103361227,LOC102782649 coding downstream 7389 4360202 ~ 4400599 (-)
LOC120547177 NA coding downstream 211628 4195143 ~ 4196360 (-)
LOC120547172 NA coding downstream 223030 4177573 ~ 4184958 (-)
trnad-guc_28 NA coding downstream 229048 4178869 ~ 4178940 (-)
ephx1 ephx1,LOC102787086 coding downstream 517338 3884965 ~ 3890650 (-)
LOC120547180 NA coding upstream 5727 4480829 ~ 4485479 (-)
cfap206 cfap206,LOC104962646,LOC104951787 coding upstream 159441 4634543 ~ 4654939 (-)
LOC120547250 LOC104919706,LOC106571281 coding upstream 180754 4655856 ~ 4681570 (-)
si:ch211-241j12.4 LOC103354013 coding upstream 210431 4685533 ~ 4702724 (-)
rad51 rad51 coding upstream 256286 4731388 ~ 4741645 (-)
G182156 NA non-coding downstream 3721 4404025 ~ 4404267 (-)
G182155 NA non-coding downstream 12983 4394573 ~ 4395005 (-)
G182137 NA non-coding downstream 123829 4283960 ~ 4284159 (-)
trnad-guc_27 NA non-coding downstream 232962 4174955 ~ 4175026 (-)
trnad-guc_26 NA non-coding downstream 236835 4171082 ~ 4171153 (-)
G182182 NA non-coding upstream 52914 4528016 ~ 4529058 (-)
LOC120546262 NA non-coding upstream 71066 4546168 ~ 4554488 (-)
G182202 NA non-coding upstream 115691 4590793 ~ 4591004 (-)
G182276 rmdn3 non-coding upstream 244815 4719917 ~ 4721769 (-)
G182302 NA non-coding upstream 333976 4809078 ~ 4809580 (-)
G182121 NA other downstream 241992 4163358 ~ 4165996 (-)
trnav-aac_21 NA other downstream 252156 4155760 ~ 4155832 (-)
trnav-aac_20 NA other downstream 259010 4148907 ~ 4148978 (-)
G182102 NA other downstream 307508 4100010 ~ 4100480 (-)
G182059 NA other downstream 493973 3908547 ~ 3914015 (-)
smim8 smim8 other upstream 270671 4745773 ~ 4803492 (-)
zgc:112001 LOC103354005,LOC100690140,LOC102211542,LOC102799045,LOC102300982 other upstream 836404 5311506 ~ 5313715 (-)
G182474 NA other upstream 1315187 5790289 ~ 5792938 (-)
G182502 NA other upstream 1436210 5911312 ~ 5911909 (-)
cgrrf1 NA other upstream 1757640 6232742 ~ 6269143 (-)

Expression


Co-expression Network