LOC120547053


Basic Information

Item Value
gene id LOC120547053
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34037056 ~ 34052641 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782425.1
ttttattttctaggaatggggggaaaaaacacaaaacctgAAGAACCTCCACTTTTCAACAAACCATGGAGGGAAATAAACTGGAGAGACAACCAGAGTGCCCTGCAGTATGTGAAGGACTACAGACCTCAGACTGACGGCCAGCTGCTCAGGATTCTTCTTCATGGTCCGGTTGGAGCTGGAAAGTCCAGTTTCATCAACTGTGTTCAAAGTGTCTTACGCGGCCGTATGTACGCACACGCTTTGGCAGACAACACCACTCACGACTGTTTCACGAAAAGATACAGAACCTTCAAGATCCAAAATGAAAGACCAGATACCTTTTACCCTTTtgtctttaatgacatcatGGGCCTGGACAAAGACATATACAAAGGCGTCCATGTGGACGACGTCAAACTGGCTATGATGGGAAAAGTGAAGGAAGGTTACAGGTTCAATCCTGAATCAATGATGTTAGATGATCCTTTCTACAACGAACATCCAACTAACAACGACAAAGTGCACGTTCTGGTTTGTGTCGTTGATGCCAACAAATTATCTTTCATTAGTGACGAAGCTGTGGAGAAAATTCGCACAATAAGGATTGAAGCCAGTAAACTGAATATTCCTCAAGTGGCCATTCTCACAAAGATTGATGAGGTCTGTCCTGAACTCAAcgaagatttaaaaaatatctacATGGTCAAGTCCCTGAAGGCAAAGaTGGAGGAGATCAGTGCCAAAGTGGGAATTCCCATGAACTGCATCTTCCCTGTGAAGAACTATGATTCAGAAATTGACCTCAACAATGACATTGACTCACTGATCCTGAGCGCAATGAAACACATCATCAACTTGGGAGACGATTGCATCAACTTCATCAAAAGCATGGGAGCAGAACACTCCAGATTTGGAGCAGCCCTAGCTCCTCCAATTCTCAGCAAACCATGGAGGGAAATAAACTGGAGAGACAACCAGAGTGCCCTGCAGTATGTGAAGGACTACAGACCTCAGACTGACGGCCAGCATCTCCGGATTCTCCTTCATGGTCCGGCTGGAGCTGGAAAGTCCAGTTTCATCAACTCTGTCCAAAGTATCTTACATGGCCGTATGTACGCACATGCTTTGGTGGACAACACCTCTCACGACTGTTTCACAAAAAGGTACACAACCTACAAGATAAAAAAAGGCCCAGCAACCTTTTACTCTTTTGTCTTCAATGACATCATGGGCCTGGATCCAATCAAAGGTGTCCCTGTGAACGATGTCAAACTGGCTATGATGGGACACGTGAAGGAAGATTACAGGttCAATCCTGaaacaatgttgtcagacaACGATCAATTCTACAACAAATATCCAACTGAAAACGATAAAGTGCACGTTCTGGTTTGTGTCATTGATGCCAACACAGTTCctcaaatgaatgaaaaaactGTGGAGAAGATTCGCGACATCAGGATTGAAGCCAGAAAACTGAGGATTCCTCAAGTGGCCATTCTCACCAAGATTGATGAGGTCTGTCCTGAAATCAAAGACGATTTACAGAATGTCTACAAGATGAAGTACGTGAAGGAAAAGatGGAGGAGTTCAGTGCCAAAGTGGGAATTCCCATGAACTGCATCTTCCCTGTGAAGAACTACGATGAAGAAATCGACCTCAACAGTGACGTTGACACACTGATCCTGAGCTCCATTAAACACATCATCAACTTCGGAGACGACTGCATCAACTTCGACAAGGATCAGTCTGAAGGATGAGTCTGACTAGGTTTGATCAGAGCATAAAAAGGCGATATTTCATGATGTCAAAAAAAACTACCTGCGACACTTTCCAGCAGGATTTCCAACAATCTTTTTGCTTACTGCACCATTTGTGTTTTACTTTAAAGCatgtgtgtcaaactcaacttctctGAAGGCCACAgttgagtttattgacatgcttttattccaaaaaagtcaaatatctttgcctgtattattgcatgtctcatatagtcttctcacgtACAGTTTGGTCTACAATGCTCTAAAAGAGTGAGAAAAAGAAGTTCCTTAGTCATCATAGATTtaagcaaatcaagcaaaacagaaattacatttttaatagcagcgaccacacagctgacagctGAATTTCTGCAGTCTGAAAAAACAGTTTAGGcaggccaaaatgtattctgaAACTAAATTAATATGcaggccggatcaaaatctacGAGGGGCTGAGTTCGGCCCGCAGgccatgagttttttttttctcagtttatttaaatagggacagatacaaaaaacatagattattacataaataacaatccgatgcctgtatcacagtgtttatAGCAGAGTTTGACACATATGCTTTAAAGCACATGAAAACATGGCTACAAATCTCAGTAACATGAAATATTCATGACTAAATAAGCAGCCATaaagtaaaaaacaacatataagATACATAAGAAGTTCAACACTCAACCGCTCAGTTAATCTGCTTTGTTAGGAACGTGTAAATttggttttattacatttaaatttccTATGACATGAAATATGtaacatattttttaaagtgaGGAGAGCACAGACAAAAAGTTTCTCACGTAAATTGACTGAAATTGTTCTTACTTTGTATATTATGTGTTAATGTAAGAATTCATCACTTATAATTTGAAAATAATAAGTTTTCAGGACCTTTCATTTGTTGTATCTTCAATAATCTAACAGAGCGATTAGTGTCTCCATCTTTATAACTAGTTTTGTTTAGGGCATTAACAATTAACTTAATTTTGTAACCCGCATaactttatattatttatacagaTCCCAAACATACCAAATAGTTCAGGCAGCATCTATAAAACCAAGTCTTGTGTTATAATATTTCACTCAATGTAACCAACATGTAGCTTCAATAACCagctaaaatacaataaatctgCTTTTTCAACCTTCAA
>XM_039782426.1
aaaaacgtacttggcaataaaaccctttctgattctgattctgattctgatgttcccaactgcccgggagtttgtgaAACAGCTGACAGTTTCCTCAGTCCCTCCGTCTCTTTCTCCGGGAAATGAAGCTGCCCTCAAGTGCACTTagggggttaaaaaaaaacaggatgtcacacaaatgggccatttCAATGACACTCCCCCTTGCTGCACAACCCTGCAGTGAATCACCGGATCCTCTTTTGCTGGTGTGAACATGCCCAAAAAAATGTCAGGTGTTTTAACTCCCTCGCCAAAAGTAAACATCTATCATGTAAATGTCTCATTAGAGCTGCATGTTTAGCCAACAGTAACCTGTTGAACAGATCTTCCCTTTAAGTGCTGTGATGATCTGATGGATTGAAAATATTCTTGTTTACGTCTCAACTTTGACTAATGGGCCTCAAATTAGACTCTATCAAGAAGTTTAgttaaagtaaagtaagtaaaattaTTGGGGCTGCCtctttacataaaataaaaaagacagagaaaaagaactCTGCtttgaaaagagaaaacaaacatcctggtgaaaatgaaagtaaatgTATGTGGTTTCTGGTCCGGTGTGATGAAGGGAAATGTATGTTATGTGGGGGAGGGTCAGTTATTGACATTTACAGACAGCTACATAACTTACACGCTTACATTACGCTCACTTTGTTCCAGTACAACAACGCAGgaatggggggaaaaaacacaaaacctgAAGAACCTCCACTTTTCAACAAACCATGGAGGGAAATAAACTGGAGAGACAACCAGAGTGCCCTGCAGTATGTGAAGGACTACAGACCTCAGACTGACGGCCAGCTGCTCAGGATTCTTCTTCATGGTCCGGTTGGAGCTGGAAAGTCCAGTTTCATCAACTGTGTTCAAAGTGTCTTACGCGGCCGTATGTACGCACACGCTTTGGCAGACAACACCACTCACGACTGTTTCACGAAAAGATACAGAACCTTCAAGATCCAAAATGAAAGACCAGATACCTTTTACCCTTTtgtctttaatgacatcatGGGCCTGGACAAAGACATATACAAAGGCGTCCATGTGGACGACGTCAAACTGGCTATGATGGGAAAAGTGAAGGAAGGTTACAGGTTCAATCCTGAATCAATGATGTTAGATGATCCTTTCTACAACGAACATCCAACTAACAACGACAAAGTGCACGTTCTGGTTTGTGTCGTTGATGCCAACAAATTATCTTTCATTAGTGACGAAGCTGTGGAGAAAATTCGCACAATAAGGATTGAAGCCAGTAAACTGAATATTCCTCAAGTGGCCATTCTCACAAAGATTGATGAGGTCTGTCCTGAACTCAAcgaagatttaaaaaatatctacATGGTCAAGTCCCTGAAGGCAAAGaTGGAGGAGATCAGTGCCAAAGTGGGAATTCCCATGAACTGCATCTTCCCTGTGAAGAACTATGATTCAGAAATTGACCTCAACAATGACATTGACTCACTGATCCTGAGCGCAATGAAACACATCATCAACTTGGGAGACGATTGCATCAACTTCATCAAAAGCATGGGAGCAGAACACTCCAGATTTGGAGCAGCCCTAGCTCCTCCAATTCTCAGCAAACCATGGAGGGAAATAAACTGGAGAGACAACCAGAGTGCCCTGCAGTATGTGAAGGACTACAGACCTCAGACTGACGGCCAGCATCTCCGGATTCTCCTTCATGGTCCGGCTGGAGCTGGAAAGTCCAGTTTCATCAACTCTGTCCAAAGTATCTTACATGGCCGTATGTACGCACATGCTTTGGTGGACAACACCTCTCACGACTGTTTCACAAAAAGGTACACAACCTACAAGATAAAAAAAGGCCCAGCAACCTTTTACTCTTTTGTCTTCAATGACATCATGGGCCTGGATCCAATCAAAGGTGTCCCTGTGAACGATGTCAAACTGGCTATGATGGGACACGTGAAGGAAGATTACAGGttCAATCCTGaaacaatgttgtcagacaACGATCAATTCTACAACAAATATCCAACTGAAAACGATAAAGTGCACGTTCTGGTTTGTGTCATTGATGCCAACACAGTTCctcaaatgaatgaaaaaactGTGGAGAAGATTCGCGACATCAGGATTGAAGCCAGAAAACTGAGGATTCCTCAAGTGGCCATTCTCACCAAGATTGATGAGGTCTGTCCTGAAATCAAAGACGATTTACAGAATGTCTACAAGATGAAGTACGTGAAGGAAAAGatGGAGGAGTTCAGTGCCAAAGTGGGAATTCCCATGAACTGCATCTTCCCTGTGAAGAACTACGATGAAGAAATCGACCTCAACAGTGACGTTGACACACTGATCCTGAGCTCCATTAAACACATCATCAACTTCGGAGACGACTGCATCAACTTCGACAAGGATCAGTCTGAAGGATGAGTCTGACTAGGTTTGATCAGAGCATAAAAAGGCGATATTTCATGATGTCAAAAAAAACTACCTGCGACACTTTCCAGCAGGATTTCCAACAATCTTTTTGCTTACTGCACCATTTGTGTTTTACTTTAAAGCatgtgtgtcaaactcaacttctctGAAGGCCACAgttgagtttattgacatgcttttattccaaaaaagtcaaatatctttgcctgtattattgcatgtctcatatagtcttctcacgtACAGTTTGGTCTACAATGCTCTAAAAGAGTGAGAAAAAGAAGTTCCTTAGTCATCATAGATTtaagcaaatcaagcaaaacagaaattacatttttaatagcagcgaccacacagctgacagctGAATTTCTGCAGTCTGAAAAAACAGTTTAGGcaggccaaaatgtattctgaAACTAAATTAATATGcaggccggatcaaaatctacGAGGGGCTGAGTTCGGCCCGCAGgccatgagttttttttttctcagtttatttaaatagggacagatacaaaaaacatagattattacataaataacaatccgatgcctgtatcacagtgtttatAGCAGAGTTTGACACATATGCTTTAAAGCACATGAAAACATGGCTACAAATCTCAGTAACATGAAATATTCATGACTAAATAAGCAGCCATaaagtaaaaaacaacatataagATACATAAGAAGTTCAACACTCAACCGCTCAGTTAATCTGCTTTGTTAGGAACGTGTAAATttggttttattacatttaaatttccTATGACATGAAATATGtaacatattttttaaagtgaGGAGAGCACAGACAAAAAGTTTCTCACGTAAATTGACTGAAATTGTTCTTACTTTGTATATTATGTGTTAATGTAAGAATTCATCACTTATAATTTGAAAATAATAAGTTTTCAGGACCTTTCATTTGTTGTATCTTCAATAATCTAACAGAGCGATTAGTGTCTCCATCTTTATAACTAGTTTTGTTTAGGGCATTAACAATTAACTTAATTTTGTAACCCGCATaactttatattatttatacagaTCCCAAACATACCAAATAGTTCAGGCAGCATCTATAAAACCAAGTCTTGTGTTATAATATTTCACTCAATGTAACCAACATGTAGCTTCAATAACCagctaaaatacaataaatctgCTTTTTCAACCTTCAA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway
ko04662 B cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782425.1 False 2945 mRNA 0.39 14 34038562 34052641
XM_039782426.1 True 3656 mRNA 0.40 15 34037056 34052641

Neighbor

gene id symbol gene type direction distance location
LOC120546447 NA coding upstream 1103 34018631 ~ 34035953 (+)
LOC120546767 LOC103364257,LOC107092024 coding upstream 23608 34008396 ~ 34013448 (+)
LOC120546181 adgrg6 coding upstream 370803 33629800 ~ 33666253 (+)
LOC120546153 LOC103369399 coding upstream 750116 33279911 ~ 33286940 (+)
LOC120546516 NA coding upstream 798729 33231034 ~ 33238327 (+)
LOC120547054 NA coding downstream 3339 34055980 ~ 34065783 (+)
LOC120546448 NA coding downstream 52754 34105395 ~ 34110113 (+)
LOC120546562 NA coding downstream 57438 34110079 ~ 34173614 (+)
LOC120546449 NA coding downstream 131548 34184189 ~ 34187555 (+)
LOC120546450 NA coding downstream 265684 34318325 ~ 34333003 (+)
G189294 NA non-coding upstream 92472 33886415 ~ 33944584 (+)
G189352 NA non-coding upstream 98707 33938055 ~ 33938349 (+)
G189302 NA non-coding upstream 139483 33887512 ~ 33897573 (+)
G189345 NA non-coding upstream 144606 33890507 ~ 33892450 (+)
G189339 NA non-coding upstream 152058 33839721 ~ 33884998 (+)
LOC120546208 NA non-coding downstream 16960 34069601 ~ 34071742 (+)
LOC120547081 NA non-coding downstream 27618 34080259 ~ 34096714 (+)
G189450 NA non-coding downstream 48870 34101511 ~ 34102289 (+)
LOC120546319 NA non-coding downstream 50102 34102743 ~ 34104308 (+)
LOC120546565 NA non-coding downstream 81692 34134333 ~ 34137040 (+)
LOC120546766 LOC103364256 other upstream 36520 33859146 ~ 34000536 (+)
G189305 NA other upstream 50580 33965583 ~ 33986476 (+)
G189307 NA other upstream 97669 33932064 ~ 33939387 (+)
LOC120546446 LOC103364256 other upstream 180644 33846444 ~ 33856412 (+)
LOC120546444 NA other upstream 265654 33765353 ~ 33771402 (+)
LOC120546451 LOC103364258,LOC108444017 other downstream 325859 34378500 ~ 34455344 (+)
G189544 NA other downstream 410267 34462908 ~ 34464897 (+)
G189541 zdhhc14,LOC102790573,LOC102208331 other downstream 430223 34482864 ~ 34503755 (+)
G189570 NA other downstream 433783 34486424 ~ 34487177 (+)
LOC120546454 NA other downstream 478747 34531388 ~ 34585439 (+)

Expression


Co-expression Network