LOC120547092 (psmc1)


Basic Information

Item Value
gene id LOC120547092
gene name psmc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11638846 ~ 11650060 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782501.1
TTTATTTTCCTCTAAGTTTTCTGTCCCTTAGACTTGCCGTACCCTCTGACGTCACTGGAAAGCGACAAGTAACAATGGGTCAAAGCCAGAGTGGAGGCCACGGTCCGGGGGGAGGCAAGAAGGATGACAAGGATAAGAAAAAGAAGTATGAGCCTCCAATTCCCACCAGAGTTGgcaagagaaagaagaagaccAAGGGACCAGATGCTGCCAGTAAACTACCATTAGtGACCCCTCACACTCAATGCCGTCTAAAGCTGCTGAAGCAGGAGCGGATCAAAGACTACCTGTTGATGGAGGAGGAGTTCATCAGAAACCAGGAGCAGATGAAGCCTCTGGAAGAGAAACAGGAGgaggAGAGGTCAAAGGTGGACGACCTGCGGGGGACCCCTATGTCCGTGGGCACTCTGGAAGAAATCATCGATGACAACCACGCCATCGTTTCCACCTCAGTGGGATCAGAGCACTACGTCAGCATACTGTCCTTTGTGGATAAGGATCTGCTTGAGCCAGGCTGCTCTGTCCTGCTCAACCACAAGGTTCATGCAGTGATTGGCGTGCTGATGGATGACACTGATCCCCTGGTGACGGTGATGAAGGTGGAGAAGGCCCCACAAGAAACCTACGCTGACATCGGAGGACTGGACAATCAGATCCAGGAAATCAAGGAGTCGGTGGAGCTGCCTCTCACGCATCCAGAGTATTATGAGGAGATGGGAATAAAGCCTCCCAAAGGTGTCATCTTATATGGAGCGCCTGGCACAGGCAAGACACTGCTGGCCAAGGCCGTAGCCAATCAGACGTCAGCCACCTTCCTACGCGTTGTGGGCTCGGAGCTGATCCAGAAGTACCTGGGAGACGGGCCCAAGCTGGTCCGGGAGCTCTTCAGGGTGGCAGAGGAGTACGCGCCCTCCATCGTCTTCATCGATGAGATTGATGCCATCGGCACTAAGAGGTATGACTCTAACTCTGGCGGCGAGAGGGAAATCCAGAGGACCATGCTGGAGCTGCTCAATCAGCTGGATGGCTTCGACTCCCGGGGAGACGTCAAAGTTATCATGGCCACCAACCGGATAGAAACCCTGGATCCAGCCCTCATCAGACCTGggaGAATCGACCGCAAGATTGAGTTTCCCCTGCCGGATGAGAAGACCAAAAGGAGGATCTTCCAGATCCACACCAGCCGCATGACCGTAGCAGATGATGTCACCCTCGATGACCTCATCCTGGCTAAGGACGACCTATCAGGAGCAGACATTAAGGCCATCTGCACAGAAGCAGGCCTCATGGCTCTGCGGGAGCGCCGTATGAAAGTCACCAACGAAGACTTCAAGAAGTCCAAGGAGAACGTCCTGTACAAGAAGCAGGAGGGCACGCCGGAGGGGCTCTACCTCTAACCTTCAAACTTTTTCggtttctctccctctcagccCACCACTCACCCCTACTCTTATCTATCGCTGTGTGAAAGAGAGGAGGCAGCAGTTGAGTTGTCTGTCTCCCCAGAgagttttgatatattttgtgcATGTCATTGTCTGGCTTATCCCACTCTCCTGTTACCGTTATGTGATTAAAAggacaacaaaaataaatggtGGTAGTGTGCAAGtca

Function

symbol description
psmc1 Enables RNA binding activity. Predicted to be involved in negative regulation of neuron death; positive regulation of proteasomal protein catabolic process; and protein catabolic process. Located in cytosol and nucleoplasm. Part of proteasome complex.

NR:

description
PREDICTED: 26S protease regulatory subunit 4

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03062 PSMC1, RPT2; 26S proteasome regulatory subunit T2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782501.1 True 1615 mRNA 0.53 11 11638846 11650060

Neighbor

gene id symbol gene type direction distance location
LOC120546716 calm1,LOC107396020,LOC102778633,LOC102293206,LOC103380713 coding downstream 4516 11619704 ~ 11634330 (-)
LOC120546403 NA coding downstream 62789 11575473 ~ 11576057 (-)
LOC120547228 LOC104952422,LOC104931204 coding downstream 90496 11546186 ~ 11548350 (-)
glrx5 glrx5 coding downstream 910321 10724470 ~ 10728525 (-)
pla2g7 pla2g7,LOC102800283 coding downstream 930009 10693839 ~ 10708837 (-)
kcnk13b kcnk13,LOC106526329 coding upstream 9934 11659994 ~ 11673089 (-)
tshr tshr coding upstream 243474 11893534 ~ 11918141 (-)
nrxn3b LOC102203786,LOC101486071,LOC103457817 coding upstream 377488 12027548 ~ 12358231 (-)
trnat-ugu_2 NA coding upstream 933109 12583169 ~ 12583241 (-)
ccnk ccnk coding upstream 1045877 12695937 ~ 12703184 (-)
G183720 brms1l,LOC103358934 non-coding downstream 48286 11586036 ~ 11590560 (-)
G183685 NA non-coding downstream 94781 11540514 ~ 11544065 (-)
G183682 NA non-coding downstream 101395 11536271 ~ 11537451 (-)
G183665 NA non-coding downstream 138193 11500081 ~ 11500653 (-)
G183656 NA non-coding downstream 191527 11446975 ~ 11447319 (-)
G183732 NA non-coding upstream 8378 11658438 ~ 11658962 (-)
G183734 NA non-coding upstream 8994 11659054 ~ 11659573 (-)
G183747 NA non-coding upstream 48992 11699052 ~ 11699965 (-)
G183753 NA non-coding upstream 97071 11747131 ~ 11747593 (-)
G183781 NA non-coding upstream 137941 11788001 ~ 11788321 (-)
G183650 NA other downstream 264231 11374108 ~ 11374615 (-)
LOC120546776 NA other downstream 1028221 10455244 ~ 10610625 (-)
G183528 NA other downstream 1117436 10520717 ~ 10521410 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other downstream 1537785 10099478 ~ 10101061 (-)
G183176 NA other downstream 2505374 9129573 ~ 9133472 (-)
ost4 NA other upstream 1257242 12907302 ~ 12908747 (-)
LOC120547209 NA other upstream 1310438 12960498 ~ 13007868 (-)
hmgn3 hmgn3,LOC104958971 other upstream 1495404 13145464 ~ 13215900 (-)
runx2b runx2,LOC102312376 other upstream 1605825 13255885 ~ 13303784 (-)
fkbp1b fkbp1b other upstream 1808542 13458602 ~ 13468065 (-)

Expression


Co-expression Network