nkx2.2b


Basic Information

Item Value
gene id nkx2.2b
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31866894 ~ 31869296 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782524.1
CGTGCAGCTCCGTGCTCCAGCTCCGTTTAACTGCGTCCATGGACCCGAACCCTGTGCCTGCTCCTCTTTAACGGGCTGCAGAGGCTGAATCATCGCGAGACACGATCCACCCTCCACCCCCCCACTGCGTAATGTCTTTTGGCACCAACACAAAAACGGGCTTCTCCGTGCGGGACATCCTGGATCTCCCGGACCCCACAGGGAGGTACGGCTCCGGGACCGAGGAGACTGAGGAGGACGACACCGAGGAGGCCTCCGCGGAGGTTTCGGGCTCGGAAATCGGGCAGAAATTGGGATTAAGCGGCCGGAGTTTGTGCGGGCGCGACGGTGGAAGCTGCGGCAGGTGGAGCCGTGGATCCGGTAACCTTCACTTCTCATTACACGATAATTCCATGGAGTCCCGTTCCGATCCTAAATCCCCCGAGCTCTCCACGGACGAGTCCCCGGACGCGGAGCGGGATGCGGCGGGCGGCGCGGCGCAGAAGACCCGCGGAAGGAAGCGGCGGGTGCTCTTCTCCAAGGCGCAGACCTTCGAGCTGGAGCGCCGCTTTCGGCAGCAGCGCTACCTGTCCGCCCCGGAGAGAGAACACCTGGCCGGGTTGATCCGCCTCACCCCGAACCAGGTGAAGATCTGGTTCCAGAACCACCGCTACAAGCTGAAGCGCGCAGAGCACAGTTTGGAGGCGCTGCAACAGCTGCTGCCGGCGCGCCGCGTCGCCATCCCGCTTCTGGTGCGCGAGGGGAAGCCCTgtgagccaatcacagcgcaggACCTGGAGGTGACGCTCAGGTCCGGCCTGGGCCTGCCTCTGTGCGCCTACTCCACGCTGCTGCAGCCCGCATACGGCCCGGAGAGGCCCGGGCTGCCGCAGCAGCTGGCGCACGTGTACCACTGGAGCTGGTAAAACACCAATAATAATAAGCTCGAGTTTGGCCAGACAATAATTGCTTAAATTCCCCAAATAACCTCATTCAAACAATAAATGCTATTGTtcgaaaagtgacaaaattccATCTTTTTTGAATGGAGTTCGGTTCATGTCAGGATTTGTTTCCCcgggaaaaaaaagtgttttcaaGAAATTCTGAGTGTCTTAAAACAGGGCAGAATAAAACATAAGAACGTTTCCATTTTTAAAGTTAAAGCATTTTTAAAACGTAAGCACCCTGGGGTGTTGCAGGAGCCGCACATGTAGGCCTACCACTGGAGCTGGCCAAACTCCGTTCCTAAAACACTCAGAAGTCCACATAATAAACTCGGGTTCGGCCTGATAATAattgcttaacccttgtgttgacccgacaac
>XM_039782525.1
CGTGCAGCTCCGTGCTCCAGCTCCGTTTAACTGCGTCCATGGACCCGAACCCTGTGCCTGCTCCTCTTTAACGGGCTGCAGAGGCTGAATCATCGCGAGACACGATCCACCCTCCACCCCCCCACTGCGTAATGTCTTTTGGCACCAACACAAAAACGGGCTTCTCCGTGCGGGACATCCTGGATCTCCCGGACCCCACAGGGAGGTACGGCTCCGGGACCGAGGAGACTGAGGAGGACGACACCGAGGAGGCCTCCGCGGAGGTTTCGGGCTCGGAAATCGGGCAGAAATTGGGATTAAGCGGCCGGAGTTTGTGCGGGCGCGACGGTGGAAGCTGCGGCAGGTGGAGCCGTGGATCCGTACACGATAATTCCATGGAGTCCCGTTCCGATCCTAAATCCCCCGAGCTCTCCACGGACGAGTCCCCGGACGCGGAGCGGGATGCGGCGGGCGGCGCGGCGCAGAAGACCCGCGGAAGGAAGCGGCGGGTGCTCTTCTCCAAGGCGCAGACCTTCGAGCTGGAGCGCCGCTTTCGGCAGCAGCGCTACCTGTCCGCCCCGGAGAGAGAACACCTGGCCGGGTTGATCCGCCTCACCCCGAACCAGGTGAAGATCTGGTTCCAGAACCACCGCTACAAGCTGAAGCGCGCAGAGCACAGTTTGGAGGCGCTGCAACAGCTGCTGCCGGCGCGCCGCGTCGCCATCCCGCTTCTGGTGCGCGAGGGGAAGCCCTgtgagccaatcacagcgcaggACCTGGAGGTGACGCTCAGGTCCGGCCTGGGCCTGCCTCTGTGCGCCTACTCCACGCTGCTGCAGCCCGCATACGGCCCGGAGAGGCCCGGGCTGCCGCAGCAGCTGGCGCACGTGTACCACTGGAGCTGGTAAAACACCAATAATAATAAGCTCGAGTTTGGCCAGACAATAATTGCTTAAATTCCCCAAATAACCTCATTCAAACAATAAATGCTATTGTtcgaaaagtgacaaaattccATCTTTTTTGAATGGAGTTCGGTTCATGTCAGGATTTGTTTCCCcgggaaaaaaaagtgttttcaaGAAATTCTGAGTGTCTTAAAACAGGGCAGAATAAAACATAAGAACGTTTCCATTTTTAAAGTTAAAGCATTTTTAAAACGTAAGCACCCTGGGGTGTTGCAGGAGCCGCACATGTAGGCCTACCACTGGAGCTGGCCAAACTCCGTTCCTAAAACACTCAGAAGTCCACATAATAAACTCGGGTTCGGCCTGATAATAattgcttaacccttgtgttgacccgacaac

Function

NR:

description
PREDICTED: homeobox protein Nkx-2.2a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021508 floor plate formation biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782524.1 True 1307 mRNA 0.57 2 31866894 31869296
XM_039782525.1 False 1289 mRNA 0.57 2 31866894 31869296

Neighbor

gene id symbol gene type direction distance location
cebpz LOC104961443,LOC104960473 coding upstream 109976 31735570 ~ 31756918 (+)
LOC120547115 prkd3,LOC103372736 coding upstream 162531 31620408 ~ 31704363 (+)
LOC120546439 NA coding upstream 279945 31582418 ~ 31586949 (+)
cnksr3 LOC103372737,LOC102212624,LOC102300107 coding upstream 291143 31507627 ~ 31575751 (+)
LOC120547352 NA coding upstream 362666 31504009 ~ 31504228 (+)
nkx2.4b nkx2-4,LOC103364681,LOC102215835,LOC102780891 coding downstream 12169 31881465 ~ 31884802 (+)
crnkl1 crnkl1 coding downstream 224655 32093951 ~ 32105660 (+)
cd109 NA coding downstream 242294 32111590 ~ 32145910 (+)
senp6a NA coding downstream 666439 32535735 ~ 32569277 (+)
nt5e NA coding downstream 1230073 33099369 ~ 33127591 (+)
G188757 NA non-coding upstream 114688 31674705 ~ 31752206 (+)
G188768 NA non-coding upstream 145607 31720092 ~ 31721287 (+)
G188763 NA non-coding upstream 155923 31708879 ~ 31710971 (+)
G188761 NA non-coding upstream 163247 31703031 ~ 31703647 (+)
G188749 NA non-coding upstream 269179 31597215 ~ 31597715 (+)
G188809 xrn2 non-coding downstream 49703 31918999 ~ 31927133 (+)
G188816 LOC106633344,LOC106098344,LOC106674933,LOC106456206,LOC108426271 non-coding downstream 77902 31947198 ~ 31952652 (+)
G188818 NA non-coding downstream 99327 31968623 ~ 31968941 (+)
G188819 NA non-coding downstream 116016 31985312 ~ 31986086 (+)
G188960 NA non-coding downstream 273820 32143116 ~ 32143380 (+)
LOC120546196 LOC105017826 other upstream 84828 31776963 ~ 31782066 (+)
LOC120546816 NA other upstream 252372 31606054 ~ 31614522 (+)
hivep2a LOC103373864 other upstream 557498 31169067 ~ 31309396 (+)
G188352 NA other upstream 984448 30611681 ~ 30882446 (+)
LOC120546905 NA other upstream 1054442 30794219 ~ 30812452 (+)
myo6a myo6,LOC103369425 other downstream 707160 32576456 ~ 32767003 (+)
mei4 NA other downstream 1096542 32965838 ~ 33041169 (+)
pex7 pex7,LOC102797744 other downstream 1458796 33328092 ~ 33386989 (+)
LOC120546192 slc35d3,LOC102797457 other downstream 1530505 33399801 ~ 33416086 (+)
G189269 NA other downstream 1584700 33453996 ~ 33458768 (+)

Expression


Co-expression Network