LOC120547115 (prkd3,LOC103372736)


Basic Information

Item Value
gene id LOC120547115
gene name prkd3,LOC103372736
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31620408 ~ 31704363 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039782543.1
CGGTGTGTGAGCTATAGTTTGTGTCTGTCGCTGCCTGTGATAATCAGATCCGTGTGAAGCTGGAGCTGTTCGGTTGGACCTCTGGGCTTAATGGGTCGAAAGTTTGGAGTGAAACGAGACAAGAAGAAACGGTTTACTAGCTCGTTAACTGATTTACTTCTCCCTGCCAGACCCTGTGGACCGAGCACAGCGAGTTTGAACTGTTGTAACCGTTATAAATTCAGCCGTTGAGCGGCTCGAGCTCGCCGCTGGATGGGAGTTTAAAACGCTTATTTTTCTCCTCGATGAAAGCGAAAAACCCGCCCTGTTGTCAGAGATGCTGCCAGTGACACACAAGCCGCAGTCACACCCAGCAGGAAGCCTGAGGATTTAGTTGTTTAtaaaacttttctttttctttcataagTTCAACTCTGCAGCATCCAGAGCTTTTACTTCATAGTTGTGTTTCTACCTCAGAGATGCCCGTCAGTGAGAGGAGACCTTTCGTGCAGGAGTTCAGCGATAGCGGAGACCAATGTCTGCCGACAACAGCCCGCTGCCGCCGGCCTCGCTGCAGTCTTTCCCCGCCCTCCCTCCGCACGCCGTCCCGCCCACCCCGTCGCCGTCCCCGAGCCCGCCTGCCACCCTCTGCGGCCGGCTGTCCAACGGCAGCCGGGCGGGCGCCAGCCCCACCAGCTCGCGGGGCTCCATCCACGGAGGAGTCTCCTTCCTGCTCCAGATCGGACTCACCCGGGAGACGGTCACCCTGGACCCCGGAGACCACTCGCTGTCGGCTGTCCGGGAGCTCGTCTGCTCCATCGTGGATCAGAAGttCCCTGAATGTGGATTTTTCGGGATGTACGACAAGATCCTGCTCTTCCGCCACGACCTGAACTCGGACAACATCCTGCAGCGTCTGACCGCGGCGGAGGAGATCCACGAAGGAGACCTGGTCGAGGTGGTGCTCTCCGCTCTGGCCACAGCCGAGGACTTCCAGATCCGACCTCACGCGCTGTACGTCCACTCCTACAAGGCGCCGGCCTTCTGCGACGACTGCGGGGAGATGCTGTGGGGGCTCGTCCGACAGGGCCTCAAGTGTGAAGGATGCGGACTGAACTACCACAAACGGTGTGCGTTCAAGATCCCCAACAACTGCAGCGGGGTCAAGAAGAGACGGCTGTCCAACATCTCGCTGCCGGGCGCCATCATGTCCATCGCTCGTCCACCGTCCACCGAGTTCGCCCAGACACCGCAGGAGGAGCGCCCCCTCCTGGGCGCCGGGAAGCGTAACTCCCTGCTGAGCGGTCGTCCCATCTGGATGGAGAAGATGGTCCTGGGTCGGGTCAAAGTCCCTCACACCTTCTCTGTCCACACCTACACTCGTCCCACCATCTGCCAGTACTGCAAACGCTTGCTAAAGGGCCTCTTCCGCCAGGGCATGCAGTGCAAAGATTGTAAATTTAACTGCCATAAGAGATGTGCGGCCAAAATACCTCGAGACTGCCTCGGTGAGGTCGACTTTAACGGAGAACCGGCCAGTCACAGTCTGGACTCGGAGGCGACGATGGAGGTGGACAACTGCGACACCAACAGCGATGGCGGCCACAGCCTGGACGAGCAGGACGACAAGCTCTTCTTCAACGAGGGGCACGGCTGCACGGACGGCGAGAAGGACGACGAGACGCTCCGAGCCATCAGCCCGTGCACGAGCAGCAACATCCCTCTGATGCGAGTGGTTCAGTCCATCAAACACACCAAGAGAAAAAGCGCCACCATGGTTAAAGAGGGCTGGATGGTCCACTACACCAGCACCGACAACCTGAGGAAGAGACATTACTGGAGGCTGGACAGCAAGACTCTGACTCTGTTCCAGAATGAAAGCGGAGCCAAGTATTACAAGGAGATCCCCCTGTCCGAGATCCTCCAGGTGGAGCCGGCGCAGGACTTCGGTAGCCTGCCCCAGGGCAGCAACGCTCACTGCTTCGAGGTGATCACGACCAACATGGTGTACTACGTCGGGGAGGACGGTGGCGGCCTGCATCACAACCCCGTCCTGGCGGCGTCCGGCGTGGGGCGGGACGTGGGCCAGAGCTGGGAGAAGGCCATCCGACAGGCGATGATGCCCGTCACGCCCAAGGCCAGCGTCGGCACGGGGCACAGCCAGGGGAAGGACCACAAGGAAGTCTCCATCAGCATATCGGTGTCCAACTCCCAGATACAAGAAAACGTGGATATCAGCTCGGTGTATCAGATCTTTGCTGACGAAGTCCTCGGCTCCGGACAGTTTGGGATCGTCTACGGAGGTAAACACAGAAAGACCGGCAGAGACGTGGCGATCAAAATCATCGACAAAATGAGGTTTCCCACCAAACAGGAGAGCCAGCTGAGGAACGAGGTGGCCATTCTCCAGAACCTGCACCACCCGGGGATCGTTAACCTGGACTGCATGTTCGAGACGCCCGAGCAGGTGTTCGTCATCATGGAGAAGCTCCACGGCGACATGTTGGAGATGATTTTGTCCAGCGAGAAGAGCCGGCTGCCGGAACGCCTCACCAAGTTCCTGGTCACGCAGATCCTGGTGGCTCTGAGACATCTACACTTCAAGAACGTCGTCCACTGTGATCTGAAGCCGGAGAACGTTCTCCTGGCCTCGGCAGAACCCTTCCCTCAGGTGAAGCTCTGCGACTTCGGCTTCGCTCGAATCATCGGGGAGAAGTCGTTCCGCCGCTCGGTGGTCGGCACGCCGGCCTATCTGGCGCCCGAGGTGCTTCGCAGCAAAGGCTACAACCGCTCGCTAGACATGTGGTCGGTCGGCGTCATCATCTACGTCAGCCTGAGCGGGACGTTTCCCTTCAACGAGGACGAGGACATCAACGACCAGATCCAGAACGCTGCCTTCATGTACCCATCCAACCCCTGGAAGGAGATCTCGGAGCAAGCCACAGACCTCATCAATAACCTGCTGCAGGTGAAGATGAGGAAGCGCTACAGCGTGGACAAGTCGCTGAGTCACCCCTGGCTGCAGGACTACCAGACCTGGCTGGACCTCCGGGAGTTTGAGACGAAGCGAGGCGAGCGCTACATCACCCACGAGAGCGACGACGCGCGCTGGGAGGAGCACGCCGACGAGAGAGGCCTGCACTGCCCCAAACACTTCATCATGTCGCCCAACCTGGACGACATGGACGAGGACCCCTAG
>XM_039782544.1
CGGTGTGTGAGCTATAGTTTGTGTCTGTCGCTGCCTGTGATAATCAGATCCGTGTGAAGCTGGAGCTGTTCGGTTGGACCTCTGGGCTTAATGGGTCGAAAGTTTGGAGTGAAACGAGACAAGAAGAAACGGTTTACTAGCTCGTTAACTGATTTACTTCTCCCTGCCAGACCCTGTGGACCGAGCACAGCGAGTTTGAACTGTTGTAACCGTTATAAATTCAGCCGTTGAGCGGCTCGAGCTCGCCGCTGGATGGGAGTTTAAAACGCTTATTTTTCTCCTCGATGAAAGCGAAAAACCCGCCCTGTTGTCAGAGATGCTGCCAGTGACACACAAGCCGCAGTCACACCCAGCAGGAAGCCTGAGGATTTAGTTGTTTAtaaaacttttctttttctttcataagTTCAACTCTGCAGCATCCAGAGCTTTTACTTCATAGTTGTGTTTCTACCTCAGAGATGCCCGTCAGTGAGAGGAGACCTTTCGTGCAGGAGTTCAGCGGTAAGAAATGTGATCGGGGACAGAAAACGCTCGGCTGACGCACGTCAGacacgtttttatttttaatttttttttggatgTCGTTCGCCTGCGACGCCTTTCTCTCTGGACGACGTCACAGATAGCGGAGACCAATGTCTGCCGACAACAGCCCGCTGCCGCCGGCCTCGCTGCAGTCTTTCCCCGCCCTCCCTCCGCACGCCGTCCCGCCCACCCCGTCGCCGTCCCCGAGCCCGCCTGCCACCCTCTGCGGCCGGCTGTCCAACGGCAGCCGGGCGGGCGCCAGCCCCACCAGCTCGCGGGGCTCCATCCACGGAGGAGTCTCCTTCCTGCTCCAGATCGGACTCACCCGGGAGACGGTCACCCTGGACCCCGGAGACCACTCGCTGTCGGCTGTCCGGGAGCTCGTCTGCTCCATCGTGGATCAGAAGttCCCTGAATGTGGATTTTTCGGGATGTACGACAAGATCCTGCTCTTCCGCCACGACCTGAACTCGGACAACATCCTGCAGCGTCTGACCGCGGCGGAGGAGATCCACGAAGGAGACCTGGTCGAGGTGGTGCTCTCCGCTCTGGCCACAGCCGAGGACTTCCAGATCCGACCTCACGCGCTGTACGTCCACTCCTACAAGGCGCCGGCCTTCTGCGACGACTGCGGGGAGATGCTGTGGGGGCTCGTCCGACAGGGCCTCAAGTGTGAAGGATGCGGACTGAACTACCACAAACGGTGTGCGTTCAAGATCCCCAACAACTGCAGCGGGGTCAAGAAGAGACGGCTGTCCAACATCTCGCTGCCGGGCGCCATCATGTCCATCGCTCGTCCACCGTCCACCGAGTTCGCCCAGACACCGCAGGAGGAGCGCCCCCTCCTGGGCGCCGGGAAGCGTAACTCCCTGCTGAGCGGTCGTCCCATCTGGATGGAGAAGATGGTCCTGGGTCGGGTCAAAGTCCCTCACACCTTCTCTGTCCACACCTACACTCGTCCCACCATCTGCCAGTACTGCAAACGCTTGCTAAAGGGCCTCTTCCGCCAGGGCATGCAGTGCAAAGATTGTAAATTTAACTGCCATAAGAGATGTGCGGCCAAAATACCTCGAGACTGCCTCGGTGAGGTCGACTTTAACGGAGAACCGGCCAGTCACAGTCTGGACTCGGAGGCGACGATGGAGGTGGACAACTGCGACACCAACAGCGATGGCGGCCACAGCCTGGACGAGCAGGACGACAAGCTCTTCTTCAACGAGGGGCACGGCTGCACGGACGGCGAGAAGGACGACGAGACGCTCCGAGCCATCAGCCCGTGCACGAGCAGCAACATCCCTCTGATGCGAGTGGTTCAGTCCATCAAACACACCAAGAGAAAAAGCGCCACCATGGTTAAAGAGGGCTGGATGGTCCACTACACCAGCACCGACAACCTGAGGAAGAGACATTACTGGAGGCTGGACAGCAAGACTCTGACTCTGTTCCAGAATGAAAGCGGAGCCAAGTATTACAAGGAGATCCCCCTGTCCGAGATCCTCCAGGTGGAGCCGGCGCAGGACTTCGGTAGCCTGCCCCAGGGCAGCAACGCTCACTGCTTCGAGGTGATCACGACCAACATGGTGTACTACGTCGGGGAGGACGGTGGCGGCCTGCATCACAACCCCGTCCTGGCGGCGTCCGGCGTGGGGCGGGACGTGGGCCAGAGCTGGGAGAAGGCCATCCGACAGGCGATGATGCCCGTCACGCCCAAGGCCAGCGTCGGCACGGGGCACAGCCAGGGGAAGGACCACAAGGAAGTCTCCATCAGCATATCGGTGTCCAACTCCCAGATACAAGAAAACGTGGATATCAGCTCGGTGTATCAGATCTTTGCTGACGAAGTCCTCGGCTCCGGACAGTTTGGGATCGTCTACGGAGGTAAACACAGAAAGACCGGCAGAGACGTGGCGATCAAAATCATCGACAAAATGAGGTTTCCCACCAAACAGGAGAGCCAGCTGAGGAACGAGGTGGCCATTCTCCAGAACCTGCACCACCCGGGGATCGTTAACCTGGACTGCATGTTCGAGACGCCCGAGCAGGTGTTCGTCATCATGGAGAAGCTCCACGGCGACATGTTGGAGATGATTTTGTCCAGCGAGAAGAGCCGGCTGCCGGAACGCCTCACCAAGTTCCTGGTCACGCAGATCCTGGTGGCTCTGAGACATCTACACTTCAAGAACGTCGTCCACTGTGATCTGAAGCCGGAGAACGTTCTCCTGGCCTCGGCAGAACCCTTCCCTCAGGTGAAGCTCTGCGACTTCGGCTTCGCTCGAATCATCGGGGAGAAGTCGTTCCGCCGCTCGGTGGTCGGCACGCCGGCCTATCTGGCGCCCGAGGTGCTTCGCAGCAAAGGCTACAACCGCTCGCTAGACATGTGGTCGGTCGGCGTCATCATCTACGTCAGCCTGAGCGGGACGTTTCCCTTCAACGAGGACGAGGACATCAACGACCAGATCCAGAACGCTGCCTTCATGTACCCATCCAACCCCTGGAAGGAGATCTCGGAGCAAGCCACAGACCTCATCAATAACCTGCTGCAGGTGAAGATGAGGAAGCGCTACAGCGTGGACAAGTCGCTGAGTCACCCCTGGCTGCAGGACTACCAGACCTGGCTGGACCTCCGGGAGTTTGAGACGAAGCGAGGCGAGCGCTACATCACCCACGAGAGCGACGACGCGCGCTGGGAGGAGCACGCCGACGAGAGAGGCCTGCACTGCCCCAAACACTTCATCATGTCGCCCAACCTGGACGACATGGACGAGGACCCCTAGCGTTCGCCACCGCGCAGGGCGAGACGTTTTCCCGCCAGGCCAGCGGCCCGATCCGAGGCGACCCTCGACGGTGGCGGCCGCGGCCGAAAGGCGGCGCGGTGTGTTCGCGGAGGCGGCGGTCAGGCAGCTGTGTGACGACACTGTGACGATTATTCAGGTCCAGAGaagtttttaattttactttttctaTTTCACTGCGATTTTTCTACAAGCCAACAAACACACCGAGTGAGCCAAGGGCTAAAAACGACACAAATCCAGAGCctttatatacatacacacacacacacacacacacacatatacacacacacacacatatatatatatatatacaca

Function

symbol description
prkd3 Predicted to enable ATP binding activity; calcium-dependent protein kinase C activity; and metal ion binding activity. Predicted to be involved in protein kinase D signaling. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be located in cytoplasm and membrane. Orthologous to human PRKD3 (protein kinase D3).

NR:

description
PREDICTED: serine/threonine-protein kinase D3-like isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K08884 K08884; serine/threonine protein kinase, bacterial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039782543.1 False 3181 mRNA 0.59 20 31620408 31704024
XM_039782544.1 True 3641 mRNA 0.58 19 31620408 31704363

Neighbor

gene id symbol gene type direction distance location
LOC120546439 NA coding upstream 33459 31582418 ~ 31586949 (+)
cnksr3 LOC103372737,LOC102212624,LOC102300107 coding upstream 44657 31507627 ~ 31575751 (+)
LOC120547352 NA coding upstream 116180 31504009 ~ 31504228 (+)
LOC120547351 NA coding upstream 119354 31500835 ~ 31501054 (+)
LOC120547350 NA coding upstream 121080 31499109 ~ 31499328 (+)
cebpz LOC104961443,LOC104960473 coding downstream 31207 31735570 ~ 31756918 (+)
nkx2.2b NA coding downstream 162531 31866894 ~ 31869296 (+)
nkx2.4b nkx2-4,LOC103364681,LOC102215835,LOC102780891 coding downstream 177102 31881465 ~ 31884802 (+)
crnkl1 crnkl1 coding downstream 389588 32093951 ~ 32105660 (+)
cd109 NA coding downstream 407227 32111590 ~ 32145910 (+)
G188749 NA non-coding upstream 22693 31597215 ~ 31597715 (+)
G188748 NA non-coding upstream 28949 31591055 ~ 31591459 (+)
G188737 NA non-coding upstream 147410 31472777 ~ 31472998 (+)
G188736 NA non-coding upstream 161707 31458421 ~ 31458701 (+)
G188719 NA non-coding upstream 264903 31351448 ~ 31355505 (+)
G188763 NA non-coding downstream 4516 31708879 ~ 31710971 (+)
G188768 NA non-coding downstream 15729 31720092 ~ 31721287 (+)
G188785 NA non-coding downstream 135443 31839806 ~ 31911299 (+)
G188809 xrn2 non-coding downstream 214636 31918999 ~ 31927133 (+)
G188816 LOC106633344,LOC106098344,LOC106674933,LOC106456206,LOC108426271 non-coding downstream 242835 31947198 ~ 31952652 (+)
LOC120546816 NA other upstream 5886 31606054 ~ 31614522 (+)
hivep2a LOC103373864 other upstream 311012 31169067 ~ 31309396 (+)
G188352 NA other upstream 737962 30611681 ~ 30882446 (+)
LOC120546905 NA other upstream 807956 30794219 ~ 30812452 (+)
angel2 NA other upstream 1284206 30324972 ~ 30336202 (+)
LOC120546196 LOC105017826 other downstream 72600 31776963 ~ 31782066 (+)
myo6a myo6,LOC103369425 other downstream 872093 32576456 ~ 32767003 (+)
mei4 NA other downstream 1261475 32965838 ~ 33041169 (+)
pex7 pex7,LOC102797744 other downstream 1623729 33328092 ~ 33386989 (+)
LOC120546192 slc35d3,LOC102797457 other downstream 1695438 33399801 ~ 33416086 (+)

Expression


Co-expression Network